vOTU-002466

Overview

No. of genomes 33

Genome length 66,427 bps

Completeness 100.00% (complete)

Host Victivallis lenta

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-002466
Number of genomes	33
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00332 › vSUBFAM-01569 › vGENUS-01859 › vSUBGEN-01114 › vOTU-002466
Host taxonomy	Bacteria › Verrucomicrobiota › Lentisphaeria › Victivallales › Victivallaceae › Victivallis › Victivallis lenta
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1369711
BioSample	SAMEA2466890
Genome length	66,427 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	94
CDS density	89.42%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1369711_10	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1369711_10	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1369711_10	UniRef90	UniRef90_A0A6M3L0Z0	Putative helicase	NA
UHGV-1369711_10	eggNOG-mapper	756282.M4SK83_9CAUD	helicase activity	NA
UHGV-1369711_10	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1369711_10	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1369711_10	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1369711_10	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-1369711_12	PHROG	phrog_6721	NA	unknown function
UHGV-1369711_12	eggNOG-mapper	1121342.AUCO01000028_gene1278	NA	NA
UHGV-1369711_12	Structural annotation	MF_01408, TIGR02170	NA	NA
UHGV-1369711_13	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1369711_13	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1369711_13	PADLOC	drt-cluster192	DRT	DRT
UHGV-1369711_13	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1369711_14	KOfam	K02841	waaC, rfaC; heptosyltransferase I [EC:2.4.-.-]	NA
UHGV-1369711_14	UniRef90	UniRef90_A0A2V2GUY9	Autotransporter strand-loop-strand O-heptosyltransferase	NA
UHGV-1369711_14	eggNOG-mapper	1218084.BBJK01000017_gene1884	Glycosyltransferase family 9 (heptosyltransferase)	NA
UHGV-1369711_14	Pfam	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	Glyco_transf_9
UHGV-1369711_14	NCBIFam	TIGR04414.1	autotransporter strand-loop-strand O-heptosyltransferase	NA
UHGV-1369711_14	COG	COG0859	ADP-heptose:LPS heptosyltransferase	NA
UHGV-1369711_15	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1369711_15	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1369711_15	UniRef90	UniRef90_A0A1G0YK89	Exonuclease domain-containing protein	NA
UHGV-1369711_15	eggNOG-mapper	880526.KE386488_gene83	EXOIII	NA
UHGV-1369711_15	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1369711_15	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1369711_15	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1369711_15	Structural annotation	PF00929, MF_00157, NF004964, COG0847	NA	NA
UHGV-1369711_16	eggNOG-mapper	278957.ABEA03000006_gene4217	NA	NA
UHGV-1369711_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1369711_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1369711_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1369711_19	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-1369711_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1369711_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1369711_20	UniRef90	UniRef90_A0A6M3IJZ0	Putative helicase	NA
UHGV-1369711_23	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1369711_23	UniRef90	UniRef90_A0A353Z098	3'-5' exonuclease domain-containing protein	NA
UHGV-1369711_23	eggNOG-mapper	768679.TTX_1693	TIGRFAM phage SPO1 DNA polymerase-related protein	NA
UHGV-1369711_23	Pfam	PF03167	Uracil DNA glycosylase superfamily	UDG
UHGV-1369711_23	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-1369711_23	COG	COG1573	Uracil-DNA glycosylase	NA
UHGV-1369711_24	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-1369711_24	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1369711_24	UniRef90	UniRef90_A0A7X8MKU3	POLAc domain-containing protein (Fragment)	NA
UHGV-1369711_24	eggNOG-mapper	1216932.CM240_1527	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-1369711_24	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1369711_24	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-1369711_25	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1369711_25	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1369711_25	UniRef90	UniRef90_A0A0U2IM76	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1369711_25	eggNOG-mapper	596320.NEIFL0001_1032	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1369711_25	PADLOC	MTase_II_00169	Type II methyltransferase	RM
UHGV-1369711_25	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1369711_25	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-1369711_25	COG	COG0338	DNA-adenine methylase	NA
UHGV-1369711_25	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-1369711_26	KOfam	K02343	dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]	NA
UHGV-1369711_26	PHROG	phrog_5846	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1369711_26	UniRef90	UniRef90_A0A420Z960	AAA domain-containing protein (Fragment)	NA
UHGV-1369711_26	eggNOG-mapper	1408439.JHXW01000001_gene1892	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity	NA
UHGV-1369711_26	Pfam	PF13177	DNA polymerase III, delta subunit	DNA_pol3_delta2
UHGV-1369711_26	COG	COG2812	DNA polymerase III, gamma/tau subunits	NA
UHGV-1369711_28	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-1369711_28	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1369711_28	UniRef90	UniRef90_A0A6J5PTQ7	DNA ligase	NA
UHGV-1369711_28	eggNOG-mapper	936053.I1C2P4	ATP dependent DNA ligase domain	NA
UHGV-1369711_28	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-1369711_28	Pfam	PF14743	DNA ligase OB-like domain	DNA_ligase_OB_2
UHGV-1369711_28	Structural annotation	PF01068, PF17879, MF_00407, NF002868, COG1793	NA	NA
UHGV-1369711_33	KOfam	K23786	exoA; 5'-3' exonuclease [EC:3.1.11.-]	NA
UHGV-1369711_33	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-1369711_33	UniRef90	UniRef90_A0A7C1PVS5	53EXOc domain-containing protein	NA
UHGV-1369711_33	eggNOG-mapper	1379281.AVAG01000011_gene1246	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-1369711_33	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-1369711_33	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-1369711_33	Structural annotation	PF02739, PF01367, MF_01192, NF011546, COG0258	NA	NA
UHGV-1369711_34	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1369711_34	UniRef90	UniRef90_UPI001E2BC527	crossover junction endodeoxyribonuclease RuvC	NA
UHGV-1369711_34	eggNOG-mapper	28152.DJ57_2268	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-1369711_34	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-1369711_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1369711_36	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1369711_36	PHROG	phrog_16465	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1369711_36	UniRef90	UniRef90_A0A448V1T4	Chromosome segregation protein	NA
UHGV-1369711_36	eggNOG-mapper	938288.HG326224_gene1550	AAA domain	NA
UHGV-1369711_36	Pfam	PF13476	AAA domain	AAA_23
UHGV-1369711_36	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1369711_36	Structural annotation	PF13476, MF_00449, NF002244, COG0419	NA	NA
UHGV-1369711_37	KOfam	K03547	sbcD, mre11; DNA repair protein SbcD/Mre11	NA
UHGV-1369711_37	PHROG	phrog_100	SbcD-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1369711_37	UniRef90	UniRef90_A0A0F9EWD2	Metallophos_2 domain-containing protein	NA
UHGV-1369711_37	eggNOG-mapper	748449.Halha_1604	PFAM Metallophosphoesterase	NA
UHGV-1369711_37	Pfam	PF12850	Calcineurin-like phosphoesterase superfamily domain	Metallophos_2
UHGV-1369711_37	COG	COG0420	DNA repair exonuclease SbcCD nuclease subunit	NA
UHGV-1369711_37	Structural annotation	PF14582, MF_02044, NF041030, COG0420	NA	NA
UHGV-1369711_39	PHROG	phrog_15167	ATPase	other
UHGV-1369711_39	UniRef90	UniRef90_UPI0019610010	ATP-binding protein	NA
UHGV-1369711_39	eggNOG-mapper	574087.Acear_1475	DNA recombination	NA
UHGV-1369711_39	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1369711_39	Structural annotation	PF12532, TIGR00611	NA	NA
UHGV-1369711_46	Structural annotation	PF01075, MF_00392, NF007742, COG0859	NA	NA
UHGV-1369711_47	UniRef90	UniRef90_A0A5B9VTV2	Bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase	NA
UHGV-1369711_47	eggNOG-mapper	572480.Arnit_0989	Methyltransferase domain	NA
UHGV-1369711_47	Pfam	PF13489	Methyltransferase domain	Methyltransf_23
UHGV-1369711_47	COG	COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	NA
UHGV-1369711_50	Structural annotation	PF09056	NA	NA
UHGV-1369711_53	COG	COG5295	Autotransporter adhesin	NA
UHGV-1369711_57	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1369711_57	eggNOG-mapper	1232410.KI421417_gene2761	Phage-related minor tail protein	NA
UHGV-1369711_57	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1369711_57	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1369711_57	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1369711_60	Structural annotation	PF09393, TIGR01603, COG5437	NA	NA
UHGV-1369711_66	PHROG	phrog_247	major head protein	head and packaging
UHGV-1369711_66	UniRef90	UniRef90_UPI001EF0BF4D	major capsid protein	NA
UHGV-1369711_66	eggNOG-mapper	520999.PROVALCAL_03979	domain, Protein	NA
UHGV-1369711_66	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1369711_66	COG	COG5492	NA	NA
UHGV-1369711_66	Structural annotation	PF20036, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1369711_67	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1369711_68	PHROG	phrog_145	portal protein	head and packaging
UHGV-1369711_68	UniRef90	UniRef90_A0A7X8MQC7	Phage portal protein (Fragment)	NA
UHGV-1369711_68	eggNOG-mapper	1150626.PHAMO_80073	NA	NA
UHGV-1369711_68	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1369711_69	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1369711_69	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1369711_69	UniRef90	UniRef90_A0A3D1USM5	PBSX family phage terminase large subunit	NA
UHGV-1369711_69	eggNOG-mapper	1334243.S5VY04_9VIRU	Terminase-like family	NA
UHGV-1369711_69	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1369711_69	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1369711_75	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1369711_75	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1369711_75	UniRef90	UniRef90_D1VXI1	dUTP diphosphatase	NA
UHGV-1369711_75	eggNOG-mapper	679189.HMPREF9019_0917	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1369711_75	Pfam	PF00692	dUTPase	dUTPase
UHGV-1369711_75	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1369711_75	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1369711_86	Structural annotation	PF08271	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1369711	Yes	66,427 bps	44.78%	100.00%	0.9738
UHGV-0205178	No	65,366 bps	44.84%	100.00%	0.9747
UHGV-1947605	No	65,184 bps	44.83%	100.00%	0.9721
UHGV-1390078	No	69,727 bps	45.41%	99.90%	0.9758
UHGV-0240962	No	65,580 bps	44.98%	99.66%	0.9733
UHGV-1481063	No	64,205 bps	44.78%	97.64%	0.9713
UHGV-1479673	No	63,839 bps	44.80%	97.08%	0.9712
UHGV-1478068	No	63,747 bps	44.77%	96.94%	0.9729
UHGV-1435403	No	51,078 bps	45.22%	77.60%	0.9718
UHGV-1418864	No	50,226 bps	45.06%	76.29%	0.9747
UHGV-1419005	No	41,636 bps	45.49%	63.24%	0.9763
UHGV-2216146	No	35,977 bps	44.55%	54.71%	0.9749
UHGV-1930295	No	34,699 bps	44.08%	52.76%	0.9746
UHGV-1463169	No	33,749 bps	43.27%	51.31%	0.9760
UHGV-1464059	No	33,563 bps	43.23%	51.03%	0.9754
UHGV-1792941	No	29,896 bps	46.55%	45.48%	0.9635
UHGV-1932091	No	28,588 bps	45.72%	43.48%	0.9656
UHGV-1681843	No	26,884 bps	43.60%	40.85%	0.9644
UHGV-1630762	No	25,888 bps	46.46%	39.37%	0.9701
UHGV-1609828	No	24,734 bps	42.92%	37.58%	0.9763
UHGV-2212937	No	24,079 bps	45.11%	36.61%	0.9694
UHGV-0170363	No	24,083 bps	45.09%	36.60%	0.9737
UHGV-2211109	No	23,971 bps	45.16%	36.45%	0.9704
UHGV-2212942	No	21,059 bps	45.69%	32.02%	0.9736
UHGV-1713230	No	19,741 bps	45.60%	30.00%	0.9725
UHGV-1576794	No	19,525 bps	46.34%	29.66%	0.9700
UHGV-1569354	No	19,452 bps	44.99%	29.56%	0.9717
UHGV-1598397	No	18,029 bps	45.53%	27.39%	0.9718
UHGV-0044435	No	15,775 bps	45.54%	23.97%	0.9718
UHGV-1809361	No	15,775 bps	45.54%	23.97%	0.9718
UHGV-1804611	No	15,754 bps	45.52%	23.94%	0.9701
UHGV-2216486	No	13,565 bps	41.52%	20.63%	0.9770
UHGV-1897473	No	12,314 bps	42.55%	18.71%	0.9741