vOTU-002527

Overview

No. of genomes 20

Genome length 31,037 bps

Completeness 100.00% (complete)

Host Staphylococcus epidermidis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-002527
Number of genomes	20
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00052 › vSUBFAM-03693 › vGENUS-05651 › vSUBGEN-03662 › vOTU-002527
Host taxonomy	Bacteria › Firmicutes › Bacilli › Staphylococcales › Staphylococcaceae › Staphylococcus › Staphylococcus epidermidis
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1429096
BioSample	SAMN01780300
Genome length	31,037 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	44
CDS density	90.66%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1429096_1	PHROG	phrog_1529	NA	unknown function
UHGV-1429096_1	UniRef90	UniRef90_C5QS41	HTH cro/C1-type domain-containing protein	NA
UHGV-1429096_1	eggNOG-mapper	525378.HMPREF0793_2047	NA	NA
UHGV-1429096_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1429096_1	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-1429096_3	PHROG	phrog_7610	NA	unknown function
UHGV-1429096_3	Structural annotation	PF11236	NA	NA
UHGV-1429096_4	PHROG	phrog_3162	NA	unknown function
UHGV-1429096_4	UniRef90	UniRef90_UPI000568C90F	phosphatidylinositol kinase	NA
UHGV-1429096_4	eggNOG-mapper	1220551.SCHR_00575	NA	NA
UHGV-1429096_4	Pfam	PF20613	HipA-like kinase	HipA_2
UHGV-1429096_4	Structural annotation	PF20613, MF_00521, NF011460, COG0478	NA	NA
UHGV-1429096_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1429096_5	PHROG	phrog_833	endolysin	lysis
UHGV-1429096_5	UniRef90	UniRef90_A0A0E1VBQ0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1429096_5	eggNOG-mapper	458233.MCCL_0980	Ami_2	NA
UHGV-1429096_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1429096_5	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1429096_6	PHROG	phrog_199	holin	lysis
UHGV-1429096_6	UniRef90	UniRef90_A0A509LXS3	Holin	NA
UHGV-1429096_6	eggNOG-mapper	904314.SEVCU012_0532	Bacteriophage holin family	NA
UHGV-1429096_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1429096_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1429096_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1429096_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1429096_7	PHROG	phrog_6183	minor tail protein	tail
UHGV-1429096_7	UniRef90	UniRef90_A0A509M0X7	NA	NA
UHGV-1429096_7	eggNOG-mapper	55511.Q4ZE15_9CAUD	NA	NA
UHGV-1429096_7	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1429096_8	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1429096_8	PHROG	phrog_5240	tail fiber protein	tail
UHGV-1429096_8	UniRef90	UniRef90_A0A509LY99	SGNH/GDSL hydrolase family protein	NA
UHGV-1429096_8	eggNOG-mapper	55511.Q4ZE16_9CAUD	NA	NA
UHGV-1429096_8	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1429096_9	PHROG	phrog_8437	NA	unknown function
UHGV-1429096_9	UniRef90	UniRef90_A0A499SJU2	Minor structural protein	NA
UHGV-1429096_9	eggNOG-mapper	55511.Q4ZE17_9CAUD	NA	NA
UHGV-1429096_10	PHROG	phrog_6907	NA	unknown function
UHGV-1429096_11	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-1429096_11	UniRef90	UniRef90_A0A239T448	FtbL	NA
UHGV-1429096_11	eggNOG-mapper	169963.lmo0123	Prophage endopeptidase tail	NA
UHGV-1429096_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1429096_11	COG	COG4926	Phage-related protein	NA
UHGV-1429096_11	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1429096_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1429096_12	UniRef90	UniRef90_A0A509LXP6	Phage tail family protein	NA
UHGV-1429096_12	eggNOG-mapper	186152.Q8SDP2_9CAUD	Phage tail protein	NA
UHGV-1429096_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1429096_12	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1429096_13	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1429096_13	PHROG	phrog_4070	tail length tape measure protein	tail
UHGV-1429096_13	UniRef90	UniRef90_A0A6A2CTE7	Lysostaphin	NA
UHGV-1429096_13	eggNOG-mapper	874267.G4KNQ9_9CAUD	peptidoglycan catabolic process	NA
UHGV-1429096_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1429096_13	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1429096_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1429096_13	Structural annotation	PF01551, NF040883, COG3953, COG0739	NA	NA
UHGV-1429096_14	PHROG	phrog_187	head-tail adaptor	connector
UHGV-1429096_15	PHROG	phrog_88	major tail protein	tail
UHGV-1429096_15	UniRef90	UniRef90_A0A509LUM9	Phage tail protein	NA
UHGV-1429096_15	eggNOG-mapper	1235755.ANAM01000006_gene2381	Phage tail tube protein	NA
UHGV-1429096_15	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1429096_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1429096_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1429096_16	PHROG	phrog_78	tail terminator	connector
UHGV-1429096_16	UniRef90	UniRef90_A0A1B3XJG6	NA	NA
UHGV-1429096_16	eggNOG-mapper	215167.Q4ZCT3_9CAUD	NA	NA
UHGV-1429096_16	Structural annotation	PF05657	NA	NA
UHGV-1429096_17	UniRef90	UniRef90_UPI0011B4FB37	HK97 gp10 family phage protein	NA
UHGV-1429096_17	eggNOG-mapper	1458856.A0A059T5F3_9CAUD	NA	NA
UHGV-1429096_17	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1429096_18	PHROG	phrog_25	head closure Hc1	connector
UHGV-1429096_18	UniRef90	UniRef90_A0A509LY81	Head-tail adaptor protein	NA
UHGV-1429096_18	eggNOG-mapper	240302.BN982_00186	NA	NA
UHGV-1429096_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1429096_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1429096_18	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1429096_19	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1429096_19	UniRef90	UniRef90_A0A509LVT6	Phage gp6-like head-tail connector protein	NA
UHGV-1429096_19	eggNOG-mapper	195103.CPF_1583	Phage gp6-like head-tail connector protein	NA
UHGV-1429096_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1429096_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1429096_20	PHROG	phrog_6480	Arc-like repressor	transcription regulation
UHGV-1429096_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1429096_21	UniRef90	UniRef90_A0A509LUG2	Phage major capsid protein	NA
UHGV-1429096_21	eggNOG-mapper	1235755.ANAM01000006_gene2375	Phage capsid family	NA
UHGV-1429096_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1429096_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1429096_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1429096_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1429096_22	KOfam	K06904	NA	NA
UHGV-1429096_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1429096_22	UniRef90	UniRef90_A0A509LXN4	HK97 family phage prohead protease	NA
UHGV-1429096_22	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-1429096_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1429096_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1429096_22	COG	COG3740	Phage head maturation protease	NA
UHGV-1429096_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1429096_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-1429096_23	UniRef90	UniRef90_A0A509LWD3	Phage portal protein	NA
UHGV-1429096_23	eggNOG-mapper	1235755.ANAM01000006_gene2373	Phage portal protein	NA
UHGV-1429096_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1429096_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1429096_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1429096_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1429096_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1429096_24	UniRef90	UniRef90_A0A509LUT8	Terminase large subunit	NA
UHGV-1429096_24	eggNOG-mapper	1235755.ANAM01000006_gene2372	COG4626 Phage terminase-like protein, large subunit	NA
UHGV-1429096_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1429096_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1429096_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1429096_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1429096_25	PHROG	phrog_1066	NA	unknown function
UHGV-1429096_25	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-1429096_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1429096_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1429096_26	UniRef90	UniRef90_A0A509LXQ2	HNH endonuclease	NA
UHGV-1429096_26	eggNOG-mapper	1399949.U5U498_9CAUD	HNH endonuclease	NA
UHGV-1429096_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1429096_27	PHROG	phrog_22310	NA	unknown function
UHGV-1429096_28	KOfam	K24072	xpf; positive control factor	NA
UHGV-1429096_28	PHROG	phrog_1190	RNA polymerase sigma factor	transcription regulation
UHGV-1429096_28	UniRef90	UniRef90_A0A509LY70	RNA polymerase subunit sigma-70	NA
UHGV-1429096_28	eggNOG-mapper	458233.MCCL_0918	Sigma-70, region 4	NA
UHGV-1429096_28	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1429096_28	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1429096_30	PHROG	phrog_31805	NA	unknown function
UHGV-1429096_31	PHROG	phrog_201	Panton-Valentine leukocicin	DNA, RNA and nucleotide metabolism
UHGV-1429096_31	Pfam	PF07768	PVL ORF-50-like family	PVL_ORF50
UHGV-1429096_32	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1429096_32	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1429096_32	UniRef90	UniRef90_A0A509LXM4	DnaD domain protein	NA
UHGV-1429096_32	eggNOG-mapper	1280.SAXN108_2087	Replication initiation and membrane attachment	NA
UHGV-1429096_32	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1429096_32	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1429096_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1429096_32	Structural annotation	PF09681, TIGR01446, NF033788, COG3935	NA	NA
UHGV-1429096_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1429096_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1429096_33	UniRef90	UniRef90_A0A509LWB9	Single-stranded DNA-binding protein	NA
UHGV-1429096_33	eggNOG-mapper	320849.Q4ZAD5_9CAUD	Single-strand binding protein family	NA
UHGV-1429096_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1429096_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1429096_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1429096_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1429096_34	PHROG	phrog_2527	NA	unknown function
UHGV-1429096_34	UniRef90	UniRef90_A0A077UD95	NA	NA
UHGV-1429096_35	PHROG	phrog_369	NA	unknown function
UHGV-1429096_35	UniRef90	UniRef90_A0A509LUL2	NA	NA
UHGV-1429096_35	Pfam	PF06900	NA	DUF1270
UHGV-1429096_35	Structural annotation	PF06900	NA	NA
UHGV-1429096_36	PHROG	phrog_5920	NA	unknown function
UHGV-1429096_36	eggNOG-mapper	1220551.SCHR_00795	NA	NA
UHGV-1429096_37	PHROG	phrog_14955	NA	unknown function
UHGV-1429096_38	PHROG	phrog_1902	NA	unknown function
UHGV-1429096_40	PHROG	phrog_9848	NA	unknown function
UHGV-1429096_41	UniRef90	UniRef90_A0A509LVR8	NA	NA
UHGV-1429096_41	eggNOG-mapper	562981.HMPREF0428_01421	NA	NA
UHGV-1429096_41	Pfam	PF05339	NA	DUF739
UHGV-1429096_41	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1429096_41	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-1429096_42	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1429096_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1429096_42	UniRef90	UniRef90_A0A509LVF5	Helix-turn-helix domain-containing protein	NA
UHGV-1429096_42	eggNOG-mapper	1498220.A0A068A299_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-1429096_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1429096_42	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-1429096_43	PHROG	phrog_19329	NA	unknown function
UHGV-1429096_44	KOfam	K14059	int; integrase	NA
UHGV-1429096_44	PHROG	phrog_1	integrase	integration and excision
UHGV-1429096_44	UniRef90	UniRef90_A0A7I0ADR4	Site-specific integrase	NA
UHGV-1429096_44	eggNOG-mapper	984892.SPSE_1462	Phage integrase family	NA
UHGV-1429096_44	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1429096_44	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1429096_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1429096_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1429096_44	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1429096	Yes	31,037 bps	28.39%	100.00%	0.9530
UHGV-1429123	No	31,037 bps	28.39%	100.00%	0.9477
UHGV-1431583	No	31,037 bps	28.39%	100.00%	0.9479
UHGV-1432251	No	31,036 bps	28.39%	100.00%	0.9530
UHGV-0200862	No	34,442 bps	28.76%	99.90%	0.9529
UHGV-0130094	No	32,687 bps	28.47%	95.99%	0.9469
UHGV-1390072	No	31,387 bps	28.44%	92.17%	0.9487
UHGV-1430878	No	31,196 bps	28.42%	91.61%	0.9476
UHGV-1391924	No	30,367 bps	28.52%	89.18%	0.9488
UHGV-0172247	No	30,052 bps	28.45%	88.25%	0.9505
UHGV-1480998	No	29,792 bps	28.59%	87.49%	0.9484
UHGV-1407365	No	28,613 bps	28.58%	84.02%	0.9501
UHGV-1410202	No	28,424 bps	28.58%	83.47%	0.9516
UHGV-1405492	No	25,244 bps	28.72%	74.13%	0.9574
UHGV-1380961	No	22,053 bps	29.30%	64.76%	0.9671
UHGV-0131465	No	21,646 bps	29.46%	63.57%	0.9542
UHGV-1460381	No	20,299 bps	29.70%	59.61%	0.9654
UHGV-0149806	No	17,060 bps	29.56%	50.10%	0.9693
UHGV-1693923	No	14,502 bps	27.87%	42.59%	0.9584
UHGV-1626050	No	12,471 bps	27.37%	36.62%	0.9442