vOTU-002587

Overview

vOTU representative UHGV-0205907

No. of genomes 10

Genome length 57,186 bps

Completeness 100.00% (complete)

Host Agathobacter

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-002587
Number of genomes	10
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 › vSUBFAM-00040 › vGENUS-00013 › vSUBGEN-22444 › vOTU-002587
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Agathobacter
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0205907
BioSample	NA
Genome length	57,186 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	97
CDS density	86.06%
tRNA count	3
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0205907_1	PHROG	phrog_20593	NA	unknown function
UHGV-0205907_2	PHROG	phrog_874	NA	unknown function
UHGV-0205907_2	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0205907_2	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0205907_2	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0205907_5	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0205907_5	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0205907_5	UniRef90	UniRef90_A0A3R6JG61	Methyltransferase	NA
UHGV-0205907_5	eggNOG-mapper	981335.G4W934_9CAUD	N-methyltransferase activity	NA
UHGV-0205907_5	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0205907_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0205907_5	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0205907_6	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0205907_6	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0205907_6	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0205907_7	KOfam	K14059	int; integrase	NA
UHGV-0205907_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0205907_7	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0205907_7	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0205907_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0205907_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0205907_7	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0205907_9	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0205907_10	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0205907_11	PHROG	phrog_16490	NA	unknown function
UHGV-0205907_11	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0205907_12	PHROG	phrog_20016	NA	unknown function
UHGV-0205907_12	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0205907_12	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0205907_12	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0205907_13	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0205907_14	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0205907_14	Structural annotation	PF13058	NA	NA
UHGV-0205907_17	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0205907_17	UniRef90	UniRef90_UPI001C02FA3A	Rha family transcriptional regulator	NA
UHGV-0205907_17	eggNOG-mapper	1235793.C809_02221	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0205907_17	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0205907_17	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0205907_17	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0205907_18	UniRef90	UniRef90_A0A173UED2	Predicted transcriptional regulator	NA
UHGV-0205907_18	eggNOG-mapper	1280689.AUJC01000024_gene150	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0205907_18	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0205907_22	PHROG	phrog_11100	NA	unknown function
UHGV-0205907_22	eggNOG-mapper	1283077.M1ICI7_9CAUD	NA	NA
UHGV-0205907_23	PHROG	phrog_31631	NA	unknown function
UHGV-0205907_26	Structural annotation	PF19923	NA	NA
UHGV-0205907_27	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0205907_28	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0205907_28	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0205907_28	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0205907_28	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0205907_28	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0205907_28	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0205907_29	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0205907_31	UniRef90	UniRef90_UPI001D011ACB	zinc ribbon domain-containing protein	NA
UHGV-0205907_31	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0205907_35	Structural annotation	PF04466	NA	NA
UHGV-0205907_42	UniRef90	UniRef90_R5CGZ9	DNA-directed RNA polymerase subunit alpha 2	NA
UHGV-0205907_42	eggNOG-mapper	1235802.C823_01840	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0205907_42	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0205907_42	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0205907_42	Structural annotation	PF03118, NF005841	NA	NA
UHGV-0205907_43	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0205907_43	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0205907_43	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-0205907_44	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0205907_44	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0205907_44	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0205907_44	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0205907_44	COG	COG5410	NA	NA
UHGV-0205907_44	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0205907_45	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0205907_45	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0205907_45	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0205907_45	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0205907_45	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0205907_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-0205907_46	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0205907_46	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0205907_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0205907_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0205907_47	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0205907_48	PHROG	phrog_909	major head protein	head and packaging
UHGV-0205907_48	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0205907_49	PHROG	phrog_29	major head protein	head and packaging
UHGV-0205907_49	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0205907_49	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0205907_49	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0205907_49	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0205907_50	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0205907_50	Structural annotation	PF21169	NA	NA
UHGV-0205907_51	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0205907_52	PHROG	phrog_4105	NA	unknown function
UHGV-0205907_52	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0205907_53	PHROG	phrog_443	holin	lysis
UHGV-0205907_53	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0205907_53	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0205907_53	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0205907_53	Structural annotation	PF16945	NA	NA
UHGV-0205907_54	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0205907_55	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0205907_55	AcrCatalog	cluster_24841	NA	NA
UHGV-0205907_56	Structural annotation	PF05657	NA	NA
UHGV-0205907_57	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0205907_57	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0205907_60	PHROG	phrog_14030	NA	unknown function
UHGV-0205907_60	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0205907_60	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0205907_60	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0205907_61	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0205907_61	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0205907_61	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0205907_61	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0205907_61	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0205907_62	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0205907_62	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0205907_62	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0205907_63	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0205907_63	UniRef90	UniRef90_A0A1I0BKG6	BRO family, N-terminal domain	NA
UHGV-0205907_63	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0205907_63	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0205907_63	COG	COG3617	Prophage antirepressor	NA
UHGV-0205907_63	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0205907_64	PHROG	phrog_1194	NA	unknown function
UHGV-0205907_64	Pfam	PF20458	NA	DUF6711
UHGV-0205907_64	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0205907_65	PHROG	phrog_18190	NA	unknown function
UHGV-0205907_65	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0205907_65	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0205907_65	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0205907_65	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0205907_66	PHROG	phrog_17196	kinase	other
UHGV-0205907_66	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0205907_66	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0205907_68	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0205907_69	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0205907_69	Structural annotation	NF040910	NA	NA
UHGV-0205907_70	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0205907_70	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0205907_70	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0205907_70	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0205907_70	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0205907_70	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0205907_70	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0205907_70	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0205907_72	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0205907_72	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0205907_72	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0205907_72	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0205907_72	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0205907_72	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0205907_77	PHROG	phrog_26861	NA	unknown function
UHGV-0205907_77	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0205907_77	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0205907_77	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0205907_77	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0205907_77	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0205907_78	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0205907_78	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205907_78	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0205907_78	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0205907_78	Pfam	PF13476	AAA domain	AAA_23
UHGV-0205907_78	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0205907_78	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0205907_80	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0205907_82	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0205907_82	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-0205907_82	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-0205907_82	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0205907_83	PHROG	phrog_25456	NA	unknown function
UHGV-0205907_84	KOfam	K06940	NA	NA
UHGV-0205907_84	PHROG	phrog_32498	NA	unknown function
UHGV-0205907_84	UniRef90	UniRef90_A0A3R6ASD4	YkgJ family cysteine cluster protein	NA
UHGV-0205907_84	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0205907_84	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0205907_84	Structural annotation	PF03692	NA	NA
UHGV-0205907_85	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205907_85	UniRef90	UniRef90_C0CR26	HNHc domain-containing protein	NA
UHGV-0205907_85	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0205907_85	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0205907_85	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0205907_85	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0205907_85	Structural annotation	PF13392, PF07463	NA	NA
UHGV-0205907_86	eggNOG-mapper	658655.HMPREF0988_00883	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0205907_86	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0205907_87	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0205907_87	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0205907_87	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0205907_87	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0205907_87	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0205907_87	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0205907_89	PHROG	phrog_19106	NA	unknown function
UHGV-0205907_89	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0205907_89	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0205907_89	Structural annotation	TIGR01453	NA	NA
UHGV-0205907_90	PHROG	phrog_11769	NA	unknown function
UHGV-0205907_90	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0205907_90	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0205907_90	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0205907_90	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0205907_90	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0205907_91	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0205907_91	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0205907_91	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0205907_91	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0205907_91	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0205907_91	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0205907_91	COG	COG0305	Replicative DNA helicase	NA
UHGV-0205907_91	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0205907_94	PHROG	phrog_21026	NA	unknown function
UHGV-0205907_95	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0205907_96	eggNOG-mapper	397290.C810_05186	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0205907	Yes	57,186 bps	40.19%	100.00%	0.9817
UHGV-0261664	No	56,977 bps	40.05%	100.00%	0.9811
UHGV-1363719	No	56,030 bps	40.18%	100.00%	0.9821
UHGV-1393647	No	57,152 bps	40.07%	99.13%	0.9808
UHGV-0156976	No	30,621 bps	40.71%	53.09%	0.9817
UHGV-1392352	No	30,342 bps	40.78%	52.60%	0.9808
UHGV-1441472	No	29,176 bps	40.31%	50.60%	0.9815
UHGV-1609286	No	24,343 bps	40.34%	42.18%	0.9820
UHGV-0156973	No	12,107 bps	39.78%	20.98%	0.9814
UHGV-0378058	No	10,425 bps	41.67%	18.09%	0.9816