vOTU-002670

Overview

vOTU representative UHGV-2016789

No. of genomes 6

Genome length 38,164 bps

Completeness 100.00% (complete)

Host Desulfovibrio

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-002670
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00139 › vSUBFAM-01039 › vGENUS-02326 › vSUBGEN-09685 › vOTU-002670
Host taxonomy	Bacteria › Desulfobacterota I › Desulfovibrionia › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2016789
BioSample	SAMEA2737837
Genome length	38,164 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	59
CDS density	91.90%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2016789_1	eggNOG-mapper	1408428.JNJP01000025_gene276	NA	NA
UHGV-2016789_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2016789_2	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2016789_2	UniRef90	UniRef90_A0A059WFK9	IstB-like ATP binding protein	NA
UHGV-2016789_2	eggNOG-mapper	1476902.A0A067ZJ24_9CAUD	IstB-like ATP binding protein	NA
UHGV-2016789_2	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2016789_2	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-2016789_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2016789_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2016789_3	UniRef90	UniRef90_UPI000378B16C	single-stranded DNA-binding protein	NA
UHGV-2016789_3	eggNOG-mapper	1121440.AUMA01000010_gene392	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-2016789_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2016789_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2016789_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2016789_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2016789_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2016789_4	PHROG	phrog_824	NA	unknown function
UHGV-2016789_4	UniRef90	UniRef90_A0A120KLV2	VRR-NUC domain-containing protein	NA
UHGV-2016789_4	eggNOG-mapper	563192.HMPREF0179_01752	VRR_NUC	NA
UHGV-2016789_4	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2016789_5	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-2016789_5	Structural annotation	PF02796	NA	NA
UHGV-2016789_8	PHROG	phrog_474	phosphofructokinase	other
UHGV-2016789_8	UniRef90	UniRef90_A0A7X6GRJ7	NA	NA
UHGV-2016789_8	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-2016789_8	Pfam	PF19905	NA	DUF6378
UHGV-2016789_10	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2016789_10	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2016789_10	UniRef90	UniRef90_UPI00067C7A4F	DNA adenine methylase	NA
UHGV-2016789_10	eggNOG-mapper	1121441.AUCX01000014_gene550	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2016789_10	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2016789_10	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2016789_10	COG	COG0338	DNA-adenine methylase	NA
UHGV-2016789_10	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-2016789_11	eggNOG-mapper	525146.Ddes_0259	NA	NA
UHGV-2016789_11	Structural annotation	PF00544, COG3866	NA	NA
UHGV-2016789_13	PHROG	phrog_24780	NA	unknown function
UHGV-2016789_13	UniRef90	UniRef90_A0A807ZPV6	Pesticin domain-containing protein	NA
UHGV-2016789_13	eggNOG-mapper	665942.HMPREF1022_00135	Bacterial toxin homologue of phage lysozyme, C-term	NA
UHGV-2016789_13	Pfam	PF16754	Bacterial toxin homologue of phage lysozyme, C-term	Pesticin
UHGV-2016789_13	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2016789_13	Structural annotation	PF16754, MF_04136, COG3772	NA	NA
UHGV-2016789_14	PHROG	phrog_1544	NA	unknown function
UHGV-2016789_14	UniRef90	UniRef90_A0A388SKI6	NA	NA
UHGV-2016789_14	eggNOG-mapper	207559.Dde_2569	Glycosyl hydrolase 108	NA
UHGV-2016789_14	COG	COG3926	Lysozyme family protein	NA
UHGV-2016789_16	PHROG	phrog_12540	NA	unknown function
UHGV-2016789_16	UniRef90	UniRef90_A0A5Q2W839	Putative DNA binding domain	NA
UHGV-2016789_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2016789_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2016789_17	UniRef90	UniRef90_A0A6B3UE32	PBSX family phage terminase large subunit	NA
UHGV-2016789_17	eggNOG-mapper	1217652.F954_02867	Phage terminase large subunit	NA
UHGV-2016789_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2016789_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2016789_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-2016789_17	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2016789_18	PHROG	phrog_1216	portal protein	head and packaging
UHGV-2016789_18	UniRef90	UniRef90_A0A516LL11	Putative portal protein	NA
UHGV-2016789_18	eggNOG-mapper	1380394.JADL01000008_gene3768	Membrane	NA
UHGV-2016789_18	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2016789_18	Structural annotation	PF12236, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-2016789_20	PHROG	phrog_3927	head scaffolding protein	head and packaging
UHGV-2016789_21	PHROG	phrog_1328	major head protein	head and packaging
UHGV-2016789_21	UniRef90	UniRef90_UPI00097D27EC	NA	NA
UHGV-2016789_21	eggNOG-mapper	1380394.JADL01000008_gene3764	NA	NA
UHGV-2016789_21	Pfam	PF17236	NA	DUF5309
UHGV-2016789_21	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-2016789_23	PHROG	phrog_2941	virion structural protein	head and packaging
UHGV-2016789_23	eggNOG-mapper	579138.Zymop_0816	NA	NA
UHGV-2016789_23	Structural annotation	PF20387	NA	NA
UHGV-2016789_24	PHROG	phrog_240	head protein	head and packaging
UHGV-2016789_24	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-2016789_24	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-2016789_26	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-2016789_26	UniRef90	UniRef90_A0A7S5Y917	Stabilization protein	NA
UHGV-2016789_26	eggNOG-mapper	1380394.JADL01000008_gene3759	NA	NA
UHGV-2016789_26	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-2016789_27	Structural annotation	PF15868, NF012201	NA	NA
UHGV-2016789_30	eggNOG-mapper	665942.HMPREF1022_02936	NA	NA
UHGV-2016789_30	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-2016789_31	PHROG	phrog_4287	DNA ejection protein	DNA, RNA and nucleotide metabolism
UHGV-2016789_31	eggNOG-mapper	1380394.JADL01000008_gene3756	NA	NA
UHGV-2016789_32	PHROG	phrog_873	endolysin	head and packaging
UHGV-2016789_33	eggNOG-mapper	864069.MicloDRAFT_00031980	NA	NA
UHGV-2016789_34	PHROG	phrog_5795	tail protein	tail
UHGV-2016789_34	UniRef90	UniRef90_C3X7Y2	Phage Tail Collar Domain protein	NA
UHGV-2016789_34	eggNOG-mapper	1009370.ALO_01669	tail collar domain protein	NA
UHGV-2016789_34	COG	COG4675	Phage tail collar domain	NA
UHGV-2016789_34	Structural annotation	PF07484, COG4675	NA	NA
UHGV-2016789_35	eggNOG-mapper	1347368.HG964410_gene7506	Chromatin associated protein KTI12	NA
UHGV-2016789_35	COG	COG2844	UTP:GlnB (protein PII) uridylyltransferase	NA
UHGV-2016789_36	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-2016789_36	UniRef90	UniRef90_UPI001C39751F	Phage tail assembly chaperone	NA
UHGV-2016789_36	eggNOG-mapper	411464.DESPIG_01098	Phage tail assembly chaperone protein	NA
UHGV-2016789_36	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-2016789_36	Structural annotation	PF16778	NA	NA
UHGV-2016789_37	Pfam	PF18338	Lower baseplate protein N-terminal domain	BppL_N
UHGV-2016789_38	UniRef90	UniRef90_UPI0013F5D6F0	phage tail assembly chaperone	NA
UHGV-2016789_38	eggNOG-mapper	742823.HMPREF9465_00194	NA	NA
UHGV-2016789_39	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2016789_39	Structural annotation	NF040910	NA	NA
UHGV-2016789_44	KOfam	K14059	int; integrase	NA
UHGV-2016789_44	PHROG	phrog_1	integrase	integration and excision
UHGV-2016789_44	UniRef90	UniRef90_UPI000496F64A	tyrosine-type recombinase/integrase	NA
UHGV-2016789_44	eggNOG-mapper	1121440.AUMA01000008_gene873	Belongs to the 'phage' integrase family	NA
UHGV-2016789_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2016789_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2016789_44	Structural annotation	PF00589, PF13495, PF02920, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-2016789_48	KOfam	K03554	rdgC; recombination associated protein RdgC	NA
UHGV-2016789_48	UniRef90	UniRef90_A0A3P1ZV66	Recombination-associated protein RdgC	NA
UHGV-2016789_48	eggNOG-mapper	457398.HMPREF0326_01443	Putative exonuclease, RdgC	NA
UHGV-2016789_48	COG	COG2974	DNA recombination-dependent growth factor RdgC	NA
UHGV-2016789_48	Structural annotation	PF04381, MF_00194, NF001465, COG2974	NA	NA
UHGV-2016789_51	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2016789_51	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2016789_51	UniRef90	UniRef90_A0A1K1LD52	Recombinational DNA repair protein RecT (Prophage associated)	NA
UHGV-2016789_51	eggNOG-mapper	644968.DFW101_3566	RecT family	NA
UHGV-2016789_51	Pfam	PF03837	RecT family	RecT
UHGV-2016789_51	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2016789_51	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2016789_51	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2016789_52	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-2016789_52	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-2016789_52	UniRef90	UniRef90_A0A1K1LD38	Exodeoxyribonuclease VIII	NA
UHGV-2016789_52	eggNOG-mapper	105422.BBPM01000058_gene4597	NA	NA
UHGV-2016789_52	Pfam	PF12684	NA	DUF3799
UHGV-2016789_52	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2016789_52	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-2016789_53	PHROG	phrog_21731	NA	unknown function
UHGV-2016789_53	PADLOC	icity0043	NA	CRISPR-CAS
UHGV-2016789_58	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-2016789_59	PHROG	phrog_3729	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2016789_59	eggNOG-mapper	398578.Daci_4111	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2016789	Yes	38,164 bps	57.13%	100.00%	0.9657
UHGV-0079985	No	38,164 bps	57.13%	100.00%	0.9672
UHGV-0182647	No	38,164 bps	57.13%	100.00%	0.9656
UHGV-2036030	No	27,516 bps	57.72%	72.56%	0.9674
UHGV-0080087	No	22,271 bps	58.57%	58.78%	0.9743
UHGV-1730428	No	13,216 bps	58.97%	34.80%	0.9699