vOTU-002689

Overview

vOTU representative UHGV-0172015

No. of genomes 6

Genome length 41,717 bps

Completeness 100.00% (complete)

Host Gemmiger

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-002689
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00079 › vGENUS-11896 › vSUBGEN-17451 › vOTU-002689
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Gemmiger
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0172015
BioSample	SAMN09781712
Genome length	41,717 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	76
CDS density	91.59%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172015_1	PHROG	phrog_16490	NA	unknown function
UHGV-0172015_1	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0172015_2	PHROG	phrog_22984	NA	unknown function
UHGV-0172015_3	PHROG	phrog_21718	NA	unknown function
UHGV-0172015_3	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0172015_4	PHROG	phrog_3754	NA	unknown function
UHGV-0172015_4	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0172015_8	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0172015_8	eggNOG-mapper	1118055.CAGU01000028_gene99	NA	NA
UHGV-0172015_8	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0172015_8	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0172015_9	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172015_9	UniRef90	UniRef90_A0A7U9PHN3	AP2 domain protein	NA
UHGV-0172015_9	eggNOG-mapper	1304866.K413DRAFT_4685	NA	NA
UHGV-0172015_10	KOfam	K07695	devR; two-component system, NarL family, response regulator DevR	NA
UHGV-0172015_10	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0172015_10	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0172015_11	PHROG	phrog_1129	holin	lysis
UHGV-0172015_11	UniRef90	UniRef90_A0A1G9U2I2	Phage holin family Hol44, holin superfamily V	NA
UHGV-0172015_11	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0172015_11	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0172015_11	Structural annotation	PF16079	NA	NA
UHGV-0172015_12	eggNOG-mapper	97138.C820_00591	NA	NA
UHGV-0172015_13	KOfam	K07273	acm; lysozyme	NA
UHGV-0172015_13	PHROG	phrog_291	endolysin	lysis
UHGV-0172015_13	UniRef90	UniRef90_UPI000C7DA66F	glycoside hydrolase family 25 protein	NA
UHGV-0172015_13	eggNOG-mapper	665956.HMPREF1032_02177	hydrolase, family 25	NA
UHGV-0172015_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0172015_13	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0172015_13	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0172015_15	PHROG	phrog_134	NA	unknown function
UHGV-0172015_15	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0172015_15	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0172015_18	PHROG	phrog_18608	NA	unknown function
UHGV-0172015_18	eggNOG-mapper	768710.DesyoDRAFT_1133	tail collar domain protein	NA
UHGV-0172015_18	COG	COG4675	Phage tail collar domain	NA
UHGV-0172015_20	PHROG	phrog_9534	head protein	head and packaging
UHGV-0172015_20	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-0172015_20	eggNOG-mapper	491915.Aflv_0675	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0172015_20	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0172015_20	Structural annotation	PF20747	NA	NA
UHGV-0172015_21	PHROG	phrog_538	minor tail protein	tail
UHGV-0172015_21	UniRef90	UniRef90_UPI001D09A08A	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0172015_21	eggNOG-mapper	1121423.JONT01000035_gene906	Collagen triple helix repeat (20 copies)	NA
UHGV-0172015_21	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0172015_21	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0172015_21	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0172015_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0172015_22	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0172015_22	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0172015_22	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0172015_23	PHROG	phrog_19074	NA	unknown function
UHGV-0172015_23	UniRef90	UniRef90_A6BEQ7	Phage tail tape measure protein, TP901 family	NA
UHGV-0172015_23	eggNOG-mapper	411462.DORLON_00777	Phage-related minor tail protein	NA
UHGV-0172015_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0172015_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0172015_23	COG	COG5283	Phage-related tail protein	NA
UHGV-0172015_23	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0172015_25	PHROG	phrog_18646	NA	unknown function
UHGV-0172015_26	PHROG	phrog_885	major tail protein	tail
UHGV-0172015_26	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0172015_26	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0172015_26	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0172015_27	Structural annotation	PF11367	NA	NA
UHGV-0172015_28	PHROG	phrog_17977	NA	unknown function
UHGV-0172015_28	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0172015_28	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0172015_30	PHROG	phrog_544	major head protein	head and packaging
UHGV-0172015_30	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0172015_30	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0172015_30	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0172015_30	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0172015_31	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0172015_31	Structural annotation	PF06810	NA	NA
UHGV-0172015_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0172015_32	UniRef90	UniRef90_UPI001411BC8C	HK97 gp10 family phage protein	NA
UHGV-0172015_32	eggNOG-mapper	1443125.Z962_05620	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0172015_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0172015_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0172015_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0172015_35	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0172015_35	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0172015_35	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0172015_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0172015_35	COG	COG2369	NA	NA
UHGV-0172015_35	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0172015_37	PHROG	phrog_8680	NA	unknown function
UHGV-0172015_37	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-0172015_37	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0172015_37	Pfam	PF14386	NA	DUF4417
UHGV-0172015_37	Structural annotation	PF14386	NA	NA
UHGV-0172015_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-0172015_39	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0172015_39	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172015_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172015_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0172015_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172015_40	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0172015_40	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0172015_40	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0172015_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0172015_40	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0172015_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172015_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172015_40	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0172015_41	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0172015_41	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0172015_41	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0172015_41	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0172015_41	Structural annotation	PF16677	NA	NA
UHGV-0172015_42	PHROG	phrog_11237	NA	unknown function
UHGV-0172015_42	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0172015_42	Structural annotation	NF009167	NA	NA
UHGV-0172015_45	PHROG	phrog_924	NA	unknown function
UHGV-0172015_45	UniRef90	UniRef90_A0A5C7JP34	NA	NA
UHGV-0172015_45	Pfam	PF04448	NA	DUF551
UHGV-0172015_45	Structural annotation	NF041588	NA	NA
UHGV-0172015_49	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172015_49	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0172015_49	eggNOG-mapper	1291050.JAGE01000001_gene468	endonuclease activity	NA
UHGV-0172015_49	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0172015_49	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0172015_49	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0172015_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0172015_53	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0172015_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0172015_53	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0172015_54	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0172015_54	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172015_54	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0172015_54	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0172015_54	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0172015_54	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0172015_54	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0172015_55	PHROG	phrog_9804	NA	unknown function
UHGV-0172015_55	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0172015_56	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0172015_56	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0172015_56	Pfam	PF19808	NA	DUF6291
UHGV-0172015_56	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0172015_56	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0172015_56	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0172015_57	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0172015_57	UniRef90	UniRef90_UPI0012DD1D82	MBL fold metallo-hydrolase	NA
UHGV-0172015_57	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0172015_57	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0172015_57	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0172015_57	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0172015_58	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0172015_58	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172015_58	UniRef90	UniRef90_A0A329URJ6	Recombinase	NA
UHGV-0172015_58	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0172015_58	Pfam	PF03837	RecT family	RecT
UHGV-0172015_58	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0172015_58	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0172015_58	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0172015_59	PHROG	phrog_674	NA	unknown function
UHGV-0172015_59	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0172015_59	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0172015_59	Pfam	PF07083	NA	DUF1351
UHGV-0172015_59	Structural annotation	PF07083	NA	NA
UHGV-0172015_62	PHROG	phrog_20532	NA	unknown function
UHGV-0172015_62	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0172015_62	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0172015_63	PHROG	phrog_15946	NA	unknown function
UHGV-0172015_63	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0172015_64	PHROG	phrog_4652	NA	unknown function
UHGV-0172015_64	UniRef90	UniRef90_A0A0P0DZ87	Cubilin	NA
UHGV-0172015_64	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0172015_64	Structural annotation	TIGR02582, COG1604	NA	NA
UHGV-0172015_65	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0172015_65	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0172015_65	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0172015_65	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0172015_66	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0172015_66	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0172015_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172015_67	UniRef90	UniRef90_UPI001C39F078	Helix-turn-helix transcriptional regulator	NA
UHGV-0172015_67	eggNOG-mapper	742735.HMPREF9467_03609	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172015_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172015_67	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0172015_68	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0172015_70	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172015_70	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0172015_71	KOfam	K14059	int; integrase	NA
UHGV-0172015_71	PHROG	phrog_1	integrase	integration and excision
UHGV-0172015_71	UniRef90	UniRef90_UPI001F166C84	tyrosine-type recombinase/integrase	NA
UHGV-0172015_71	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0172015_71	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172015_71	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172015_71	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0172015_73	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0172015_74	Structural annotation	PF12510	NA	NA
UHGV-0172015_75	PHROG	phrog_20016	NA	unknown function
UHGV-0172015_75	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0172015_75	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0172015_75	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172015_76	PHROG	phrog_16490	NA	unknown function
UHGV-0172015_76	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0172015	Yes	41,717 bps	49.82%	100.00%	0.9738
UHGV-0172823	No	41,013 bps	50.12%	100.00%	0.9729
UHGV-0211640	No	41,013 bps	50.12%	100.00%	0.9741
UHGV-0182829	No	24,033 bps	51.14%	60.24%	0.9779
UHGV-0184806	No	23,602 bps	48.30%	58.71%	0.9723
UHGV-0184807	No	18,482 bps	52.46%	46.18%	0.9721