vOTU-002745

Overview

No. of genomes 36

Genome length 41,842 bps

Completeness 100.00% (complete)

Host Bifidobacterium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-002745
Number of genomes	36
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00024 › vSUBFAM-00169 › vGENUS-03583 › vSUBGEN-03032 › vOTU-002745
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Bifidobacteriaceae › Bifidobacterium
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0293976
BioSample	SAMD00164780
Genome length	41,842 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	58
CDS density	88.18%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0293976_1	PHROG	phrog_104	portal protein	head and packaging
UHGV-0293976_1	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0293976_1	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0293976_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0293976_1	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0293976_2	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0293976_2	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0293976_2	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0293976_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0293976_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0293976_3	PHROG	phrog_226	minor tail protein	tail
UHGV-0293976_3	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0293976_5	PHROG	phrog_34725	NA	unknown function
UHGV-0293976_6	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0293976_6	UniRef90	UniRef90_A0A133KJK7	G28 phagic protein	NA
UHGV-0293976_6	eggNOG-mapper	398513.BBNG_00839	Transcriptional regulator	NA
UHGV-0293976_6	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0293976_6	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0293976_7	PHROG	phrog_8013	NA	unknown function
UHGV-0293976_7	eggNOG-mapper	158787.BSCA_0747	tRNA 5'-leader removal	NA
UHGV-0293976_7	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0293976_7	Structural annotation	COG0789	NA	NA
UHGV-0293976_8	PHROG	phrog_22401	NA	unknown function
UHGV-0293976_8	eggNOG-mapper	1437608.BBIA_0626	NA	NA
UHGV-0293976_9	PHROG	phrog_31208	NA	unknown function
UHGV-0293976_9	eggNOG-mapper	1437608.BBIA_1862	NA	NA
UHGV-0293976_9	AcrCatalog	cluster_17067	NA	NA
UHGV-0293976_10	PHROG	phrog_33887	NA	unknown function
UHGV-0293976_11	PHROG	phrog_34390	NA	unknown function
UHGV-0293976_12	PHROG	phrog_36075	NA	unknown function
UHGV-0293976_12	Structural annotation	PF13601, MF_01804, NF040939, COG1675	NA	NA
UHGV-0293976_13	KOfam	K04485	radA, sms; DNA repair protein RadA/Sms	NA
UHGV-0293976_13	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0293976_13	UniRef90	UniRef90_A0A4S5B218	CopY family transcriptional regulator	NA
UHGV-0293976_13	eggNOG-mapper	158787.BSCA_0751	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0293976_13	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0293976_13	Pfam	PF13481	AAA domain	AAA_25
UHGV-0293976_13	Pfam	PF03965	Penicillinase repressor	Penicillinase_R
UHGV-0293976_13	COG	COG0467	RecA-superfamily ATPase, KaiC/GvpD/RAD55 family	NA
UHGV-0293976_13	Structural annotation	PF00154, PF09250, PF01475, MF_00350, MF_01177, NF006861, NF006931, COG3598	NA	NA
UHGV-0293976_15	PHROG	phrog_1911	NA	unknown function
UHGV-0293976_15	UniRef90	UniRef90_A0A087DGQ0	NA	NA
UHGV-0293976_15	eggNOG-mapper	158787.BSCA_0752	single-stranded DNA binding	NA
UHGV-0293976_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0293976_15	Structural annotation	PF00196, PF17426, NF006039, COG2771	NA	NA
UHGV-0293976_16	PHROG	phrog_1674	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0293976_16	eggNOG-mapper	158787.BSCA_0753	NA	NA
UHGV-0293976_16	Structural annotation	PF06023, MF_03030, TIGR01896, COG5377	NA	NA
UHGV-0293976_18	eggNOG-mapper	1437609.BCAL_1729	NA	NA
UHGV-0293976_19	eggNOG-mapper	1437608.BBIA_1453	NA	NA
UHGV-0293976_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0293976_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0293976_20	UniRef90	UniRef90_I3BFB8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0293976_20	eggNOG-mapper	158787.BSCA_0758	Endodeoxyribonuclease RusA	NA
UHGV-0293976_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0293976_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0293976_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0293976_22	Structural annotation	PF01815	NA	NA
UHGV-0293976_23	UniRef90	UniRef90_UPI0018A0E09C	helix-turn-helix domain-containing protein	NA
UHGV-0293976_23	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0293976_23	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0293976_24	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0293976_24	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0293976_24	UniRef90	UniRef90_A0A2I1J283	Bro-N domain-containing protein	NA
UHGV-0293976_24	eggNOG-mapper	1437608.BBIA_0645	BRO family, N-terminal domain	NA
UHGV-0293976_24	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0293976_24	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0293976_24	COG	COG3617	Prophage antirepressor	NA
UHGV-0293976_24	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0293976_26	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0293976_26	UniRef90	UniRef90_B7GRZ8	HTH cro/C1-type domain-containing protein	NA
UHGV-0293976_26	eggNOG-mapper	78346.BRUM_0420	NA	NA
UHGV-0293976_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0293976_26	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0293976_27	UniRef90	UniRef90_A0A4R0VA71	HTH cro/C1-type domain-containing protein	NA
UHGV-0293976_27	eggNOG-mapper	78346.BRUM_0421	NA	NA
UHGV-0293976_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0293976_28	PHROG	phrog_87	metallo-protease	other
UHGV-0293976_28	UniRef90	UniRef90_A0A0M0VMS4	Peptidase_M78 domain-containing protein	NA
UHGV-0293976_28	eggNOG-mapper	1437608.BBIA_2188	IrrE N-terminal-like domain	NA
UHGV-0293976_28	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0293976_28	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0293976_29	UniRef90	UniRef90_A0A080N4S8	DNA-binding HIRAN domain protein	NA
UHGV-0293976_29	eggNOG-mapper	1341695.BBOMB_1072	HIRAN domain	NA
UHGV-0293976_29	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0293976_30	PHROG	phrog_5978	NA	unknown function
UHGV-0293976_30	UniRef90	UniRef90_A0A4R0S4B0	Fido domain-containing protein	NA
UHGV-0293976_30	eggNOG-mapper	1680.BADO_1636	Fic/DOC family	NA
UHGV-0293976_30	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0293976_30	COG	COG3177	Fic family protein	NA
UHGV-0293976_30	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0293976_31	PHROG	phrog_2384	NA	unknown function
UHGV-0293976_31	UniRef90	UniRef90_A0A2K9C3Q8	P63C domain-containing protein	NA
UHGV-0293976_31	eggNOG-mapper	883.DvMF_1646	P63C domain	NA
UHGV-0293976_31	Pfam	PF10546	P63C domain	P63C
UHGV-0293976_31	Structural annotation	PF10546, COG3617	NA	NA
UHGV-0293976_32	KOfam	K14059	int; integrase	NA
UHGV-0293976_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0293976_32	UniRef90	UniRef90_E5Y0A6	Phage integrase	NA
UHGV-0293976_32	eggNOG-mapper	1437609.BCAL_1183	Phage integrase family	NA
UHGV-0293976_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0293976_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0293976_32	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0293976_33	PHROG	phrog_881	holin	lysis
UHGV-0293976_33	UniRef90	UniRef90_UPI00103D6E52	holin	NA
UHGV-0293976_33	eggNOG-mapper	158787.BSCA_0719	Putative phage holin Dp-1	NA
UHGV-0293976_33	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0293976_33	Structural annotation	PF16938	NA	NA
UHGV-0293976_34	KOfam	K07273	acm; lysozyme	NA
UHGV-0293976_34	PHROG	phrog_291	endolysin	lysis
UHGV-0293976_34	UniRef90	UniRef90_A0A6A2SCZ5	Glycoside hydrolase	NA
UHGV-0293976_34	eggNOG-mapper	78345.BMERY_0862	Glycosyl hydrolases family 25	NA
UHGV-0293976_34	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0293976_34	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0293976_34	Structural annotation	PF01183, NF007404, COG3757, COG1388	NA	NA
UHGV-0293976_36	UniRef90	UniRef90_A0A1L5L3I3	PilM	NA
UHGV-0293976_38	UniRef90	UniRef90_A0A1L5L3T6	MurA: UDP-N-acetylglucosamine (Fragment)	NA
UHGV-0293976_40	PHROG	phrog_28754	NA	unknown function
UHGV-0293976_40	UniRef90	UniRef90_A0A174BVV4	Tail type measure protein	NA
UHGV-0293976_40	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0293976_40	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0293976_41	KOfam	K14059	int; integrase	NA
UHGV-0293976_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0293976_41	UniRef90	UniRef90_A0A1X3A1N7	Recombinase	NA
UHGV-0293976_41	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0293976_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0293976_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0293976_41	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0293976_42	PHROG	phrog_9994	NA	unknown function
UHGV-0293976_42	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0293976_42	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0293976_44	PHROG	phrog_538	minor tail protein	tail
UHGV-0293976_44	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0293976_44	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0293976_44	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0293976_45	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0293976_45	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0293976_46	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0293976_46	UniRef90	UniRef90_A0A4R0U113	TP901 family phage tail tape measure protein	NA
UHGV-0293976_46	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0293976_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0293976_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0293976_46	COG	COG5283	Phage-related tail protein	NA
UHGV-0293976_46	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0293976_47	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-0293976_48	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-0293976_48	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0293976_48	Structural annotation	PF08890	NA	NA
UHGV-0293976_49	PHROG	phrog_2491	major tail protein	tail
UHGV-0293976_49	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0293976_49	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0293976_49	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-0293976_50	UniRef90	UniRef90_A0A076JJ59	Transcriptional regulator	NA
UHGV-0293976_50	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0293976_50	Structural annotation	PF06141	NA	NA
UHGV-0293976_51	PHROG	phrog_19109	NA	unknown function
UHGV-0293976_51	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0293976_51	Structural annotation	TIGR01725	NA	NA
UHGV-0293976_52	PHROG	phrog_13779	NA	unknown function
UHGV-0293976_52	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-0293976_52	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0293976_52	Pfam	PF19586	NA	DUF6093
UHGV-0293976_52	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0293976_53	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0293976_53	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0293976_53	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0293976_53	Pfam	PF09355	NA	Phage_Gp19
UHGV-0293976_53	Structural annotation	PF09355	NA	NA
UHGV-0293976_54	UniRef90	UniRef90_I3BBX9	Head fiber domain protein	NA
UHGV-0293976_55	PHROG	phrog_15682	NA	unknown function
UHGV-0293976_56	PHROG	phrog_212	major head protein	head and packaging
UHGV-0293976_56	UniRef90	UniRef90_UPI001038A13F	phage capsid protein	NA
UHGV-0293976_56	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0293976_56	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0293976_57	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0293976_57	UniRef90	UniRef90_UPI001115A562	NA	NA
UHGV-0293976_57	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0293976_58	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0293976_58	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-0293976_58	eggNOG-mapper	1437603.BMON_0139	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0293976	Yes	41,842 bps	59.95%	100.00%	0.9776
UHGV-0193670	No	41,842 bps	59.95%	100.00%	0.9784
UHGV-1357122	No	41,842 bps	59.95%	100.00%	0.9765
UHGV-0074641	No	42,678 bps	60.14%	99.90%	0.9768
UHGV-1468709	No	42,430 bps	59.60%	99.90%	0.9769
UHGV-1983968	No	41,670 bps	59.84%	99.90%	0.9741
UHGV-0068601	No	37,985 bps	60.09%	96.78%	0.9754
UHGV-1397521	No	37,985 bps	60.09%	96.78%	0.9754
UHGV-1381207	No	36,037 bps	60.14%	91.96%	0.9744
UHGV-1525957	No	30,230 bps	60.06%	72.25%	0.9791
UHGV-1508681	No	29,984 bps	60.52%	71.66%	0.9798
UHGV-0188182	No	26,872 bps	60.06%	68.27%	0.9723
UHGV-1981049	No	26,851 bps	60.01%	68.21%	0.9727
UHGV-1556116	No	28,438 bps	60.14%	67.97%	0.9780
UHGV-0116404	No	26,525 bps	60.60%	63.39%	0.9811
UHGV-0152832	No	25,599 bps	60.89%	61.18%	0.9808
UHGV-1464819	No	24,051 bps	59.83%	61.08%	0.9756
UHGV-1383515	No	23,499 bps	60.39%	56.16%	0.9794
UHGV-1376875	No	23,296 bps	60.29%	55.68%	0.9819
UHGV-0078218	No	23,274 bps	60.28%	55.62%	0.9806
UHGV-1383453	No	22,025 bps	60.70%	53.75%	0.9808
UHGV-1427628	No	21,648 bps	61.57%	51.74%	0.9808
UHGV-1422399	No	21,054 bps	60.73%	51.38%	0.9760
UHGV-1600364	No	18,306 bps	61.00%	44.71%	0.9820
UHGV-1657622	No	17,149 bps	62.09%	43.79%	0.9793
UHGV-1594905	No	17,967 bps	61.32%	42.94%	0.9808
UHGV-1728696	No	17,565 bps	61.34%	41.98%	0.9803
UHGV-1946950	No	15,633 bps	58.70%	39.55%	0.9706
UHGV-1953352	No	14,442 bps	61.81%	34.52%	0.9824
UHGV-1645880	No	14,439 bps	61.77%	34.51%	0.9823
UHGV-1640801	No	14,426 bps	61.80%	34.48%	0.9825
UHGV-0389238	No	13,626 bps	61.69%	32.57%	0.9827
UHGV-1746895	No	10,865 bps	60.36%	27.62%	0.9779
UHGV-0232336	No	11,148 bps	58.24%	23.43%	0.9808
UHGV-0346449	No	10,036 bps	58.27%	21.00%	0.9796
UHGV-0282728	No	10,274 bps	58.51%	20.34%	0.9800