vOTU-003164

Overview

vOTU representative UHGV-1998638

No. of genomes 11

Genome length 39,636 bps

Completeness 100.00% (complete)

Host Firmicutes C

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-003164
Number of genomes	11
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-00024 › vGENUS-00349 › vSUBGEN-21087 › vOTU-003164
Host taxonomy	Bacteria › Firmicutes C
Host range breadth	Phylum
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1998638
BioSample	NA
Genome length	39,636 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	51
CDS density	90.76%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1998638_1	PHROG	phrog_29533	NA	unknown function
UHGV-1998638_2	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1998638_2	UniRef90	UniRef90_F5KZL7	Lactamase_B domain-containing protein	NA
UHGV-1998638_2	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-1998638_2	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1998638_2	Structural annotation	PF12706, MF_00457, NF041851, COG1234	NA	NA
UHGV-1998638_3	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1998638_3	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1998638_3	UniRef90	UniRef90_A0A811GJA5	Protein RecT	NA
UHGV-1998638_3	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-1998638_3	Pfam	PF03837	RecT family	RecT
UHGV-1998638_3	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1998638_3	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1998638_3	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1998638_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1998638_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1998638_4	UniRef90	UniRef90_F5KZL5	BRO family, N-terminal domain protein	NA
UHGV-1998638_4	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-1998638_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1998638_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1998638_4	COG	COG3617	Prophage antirepressor	NA
UHGV-1998638_4	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1998638_5	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1998638_5	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1998638_5	UniRef90	UniRef90_A0A660M765	AAA_23 domain-containing protein	NA
UHGV-1998638_5	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-1998638_5	Pfam	PF13476	AAA domain	AAA_23
UHGV-1998638_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1998638_5	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1998638_6	PHROG	phrog_16315	NA	unknown function
UHGV-1998638_6	UniRef90	UniRef90_UPI000B139567	PcfJ domain-containing protein	NA
UHGV-1998638_6	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-1998638_6	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1998638_6	Structural annotation	PF14284	NA	NA
UHGV-1998638_7	PHROG	phrog_29844	NA	unknown function
UHGV-1998638_8	PHROG	phrog_35266	NA	unknown function
UHGV-1998638_8	UniRef90	UniRef90_UPI001A614D00	choline-binding protein A	NA
UHGV-1998638_9	UniRef90	UniRef90_D6KLD9	Surface antigen (D15)	NA
UHGV-1998638_12	UniRef90	UniRef90_A0A2S7ZHK6	DNA-binding protein	NA
UHGV-1998638_12	eggNOG-mapper	546273.VEIDISOL_00695	Helix-turn-helix domain	NA
UHGV-1998638_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1998638_12	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-1998638_13	PHROG	phrog_3220	NA	unknown function
UHGV-1998638_13	UniRef90	UniRef90_UPI000F8DC32F	NA	NA
UHGV-1998638_13	eggNOG-mapper	479436.Vpar_0385	NA	NA
UHGV-1998638_13	Pfam	PF09954	NA	DUF2188
UHGV-1998638_13	Structural annotation	PF09954	NA	NA
UHGV-1998638_17	UniRef90	UniRef90_A0A496P955	NA	NA
UHGV-1998638_17	eggNOG-mapper	1273103.NM10_03001	NA	NA
UHGV-1998638_17	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-1998638_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1998638_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1998638_18	UniRef90	UniRef90_A0A811GH07	HTH cro/C1-type domain-containing protein	NA
UHGV-1998638_18	eggNOG-mapper	1128111.HMPREF0870_01792	Helix-turn-helix XRE-family like proteins	NA
UHGV-1998638_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1998638_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1998638_18	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-1998638_19	PHROG	phrog_20936	NA	unknown function
UHGV-1998638_19	UniRef90	UniRef90_W1V9S8	Peptidase_M78 domain-containing protein	NA
UHGV-1998638_19	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1998638_19	Structural annotation	PF06114	NA	NA
UHGV-1998638_20	eggNOG-mapper	883156.HMPREF9282_01295	NA	NA
UHGV-1998638_20	Structural annotation	PF16747	NA	NA
UHGV-1998638_21	PHROG	phrog_5816	NA	unknown function
UHGV-1998638_21	UniRef90	UniRef90_A0A811GFI0	NA	NA
UHGV-1998638_21	eggNOG-mapper	866776.HMPREF9321_0603	NA	NA
UHGV-1998638_21	Pfam	PF14213	NA	DUF4325
UHGV-1998638_22	KOfam	K14059	int; integrase	NA
UHGV-1998638_22	PHROG	phrog_1	integrase	integration and excision
UHGV-1998638_22	UniRef90	UniRef90_C4FP65	Site-specific recombinase, phage integrase family	NA
UHGV-1998638_22	eggNOG-mapper	546273.VEIDISOL_00689	Belongs to the 'phage' integrase family	NA
UHGV-1998638_22	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1998638_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1998638_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1998638_22	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1998638_23	PHROG	phrog_2655	excisionase	integration and excision
UHGV-1998638_23	UniRef90	UniRef90_A0A134C667	HTH_59 domain-containing protein	NA
UHGV-1998638_23	eggNOG-mapper	1128111.HMPREF0870_00986	NA	NA
UHGV-1998638_23	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-1998638_23	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-1998638_24	PHROG	phrog_18860	NA	unknown function
UHGV-1998638_25	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1998638_25	PHROG	phrog_894	endolysin	lysis
UHGV-1998638_25	UniRef90	UniRef90_UPI001D08F77B	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-1998638_25	eggNOG-mapper	868595.Desca_1639	Peptidase M15A	NA
UHGV-1998638_25	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1998638_25	COG	COG3108	NA	NA
UHGV-1998638_25	Structural annotation	PF05951, COG3108	NA	NA
UHGV-1998638_26	PHROG	phrog_199	holin	lysis
UHGV-1998638_26	UniRef90	UniRef90_X8H951	Holin family protein	NA
UHGV-1998638_26	eggNOG-mapper	883156.HMPREF9282_01264	Bacteriophage holin family	NA
UHGV-1998638_26	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1998638_26	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1998638_27	PHROG	phrog_22483	NA	unknown function
UHGV-1998638_27	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-1998638_27	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1998638_27	Structural annotation	PF20622	NA	NA
UHGV-1998638_28	PHROG	phrog_1084	NA	unknown function
UHGV-1998638_28	eggNOG-mapper	546273.VEIDISOL_01075	NA	NA
UHGV-1998638_28	Structural annotation	PF17813, NF038186	NA	NA
UHGV-1998638_29	PHROG	phrog_1101	tail protein	tail
UHGV-1998638_29	UniRef90	UniRef90_A0A660M257	Phage-tail_3 domain-containing protein (Fragment)	NA
UHGV-1998638_29	eggNOG-mapper	706434.HMPREF9429_00513	domain protein	NA
UHGV-1998638_29	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1998638_29	COG	COG1511	NA	NA
UHGV-1998638_29	Structural annotation	PF13550, PF05895, NF040662, TIGR03503, COG4733	NA	NA
UHGV-1998638_30	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-1998638_30	PHROG	phrog_329	minor tail protein	tail
UHGV-1998638_30	UniRef90	UniRef90_W1VEK1	NlpC/P60 domain-containing protein	NA
UHGV-1998638_30	eggNOG-mapper	706434.HMPREF9429_00514	cysteine-type peptidase activity	NA
UHGV-1998638_30	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1998638_30	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1998638_30	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-1998638_31	PHROG	phrog_778	tail assembly protein	tail
UHGV-1998638_31	UniRef90	UniRef90_X8H8N4	TIGR02218 family protein	NA
UHGV-1998638_31	eggNOG-mapper	706434.HMPREF9429_00515	NA	NA
UHGV-1998638_31	Pfam	PF09931	NA	DUF2163
UHGV-1998638_31	Pfam	PF09356	Phage conserved hypothetical protein BR0599	Phage_BR0599
UHGV-1998638_31	NCBIFam	TIGR02218.1	phage conserved hypothetical protein BR0599	NA
UHGV-1998638_31	COG	COG5449	NA	NA
UHGV-1998638_31	Structural annotation	PF09931, PF09356, TIGR02218, COG5449	NA	NA
UHGV-1998638_32	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-1998638_32	UniRef90	UniRef90_X8H6S9	PF09343 family protein	NA
UHGV-1998638_32	eggNOG-mapper	706434.HMPREF9429_00516	NA	NA
UHGV-1998638_32	Pfam	PF09343	NA	DUF2460
UHGV-1998638_32	COG	COG5448	NA	NA
UHGV-1998638_32	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-1998638_33	PHROG	phrog_12798	NA	unknown function
UHGV-1998638_33	UniRef90	UniRef90_W1V9U8	Tape measure protein	NA
UHGV-1998638_33	eggNOG-mapper	706434.HMPREF9429_00517	tape measure	NA
UHGV-1998638_33	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1998638_33	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1998638_33	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1998638_33	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-1998638_34	PHROG	phrog_7377	NA	unknown function
UHGV-1998638_34	eggNOG-mapper	1123288.SOV_2c03530	NA	NA
UHGV-1998638_35	eggNOG-mapper	1232428.CAVO010000021_gene798	NA	NA
UHGV-1998638_35	Structural annotation	PF19591	NA	NA
UHGV-1998638_36	PHROG	phrog_1407	major tail protein	tail
UHGV-1998638_36	UniRef90	UniRef90_X8H8Q2	Phage major tail protein, TP901-1 family	NA
UHGV-1998638_36	eggNOG-mapper	706434.HMPREF9429_00520	Phage tail tube protein	NA
UHGV-1998638_36	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1998638_36	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1998638_36	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-1998638_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1998638_37	PHROG	phrog_18864	NA	unknown function
UHGV-1998638_37	eggNOG-mapper	706434.HMPREF9429_00521	NA	NA
UHGV-1998638_37	Structural annotation	PF06141, COG5003	NA	NA
UHGV-1998638_38	PHROG	phrog_19017	NA	unknown function
UHGV-1998638_38	eggNOG-mapper	706434.HMPREF9429_00522	NA	NA
UHGV-1998638_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1998638_39	UniRef90	UniRef90_UPI000F8E0EA5	HK97 gp10 family phage protein	NA
UHGV-1998638_39	eggNOG-mapper	706434.HMPREF9429_00523	Phage virion morphogenesis	NA
UHGV-1998638_39	COG	COG5005	NA	NA
UHGV-1998638_39	Structural annotation	TIGR01725	NA	NA
UHGV-1998638_40	PHROG	phrog_15682	NA	unknown function
UHGV-1998638_41	PHROG	phrog_212	major head protein	head and packaging
UHGV-1998638_41	UniRef90	UniRef90_UPI001C2F3899	phage capsid protein	NA
UHGV-1998638_41	eggNOG-mapper	1122918.KB907248_gene4499	NA	NA
UHGV-1998638_41	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1998638_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1998638_42	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-1998638_42	eggNOG-mapper	1123489.AUAN01000010_gene360	NA	NA
UHGV-1998638_42	Structural annotation	PF06810	NA	NA
UHGV-1998638_43	PHROG	phrog_1865	NA	unknown function
UHGV-1998638_43	Structural annotation	PF07073, MF_00436, TIGR02383, COG1923	NA	NA
UHGV-1998638_44	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1998638_44	UniRef90	UniRef90_W1VC85	Ntox50 domain-containing protein	NA
UHGV-1998638_44	eggNOG-mapper	706434.HMPREF9429_00528	NA	NA
UHGV-1998638_44	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1998638_45	PHROG	phrog_145	portal protein	head and packaging
UHGV-1998638_45	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-1998638_45	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-1998638_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1998638_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1998638_46	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1998638_46	UniRef90	UniRef90_X8H7N8	Terminase, large subunit, PBSX family	NA
UHGV-1998638_46	eggNOG-mapper	546273.VEIDISOL_00710	Phage terminase, large subunit	NA
UHGV-1998638_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1998638_46	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1998638_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1998638_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-1998638_46	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-1998638_46	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1998638_47	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1998638_47	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1998638_47	UniRef90	UniRef90_C4FP85	Terminase small subunit	NA
UHGV-1998638_47	eggNOG-mapper	546273.VEIDISOL_00709	terminase, small subunit	NA
UHGV-1998638_47	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1998638_47	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1998638_47	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1998638_48	PHROG	phrog_1558	NA	unknown function
UHGV-1998638_48	UniRef90	UniRef90_UPI0006B5171F	helix-turn-helix domain-containing protein	NA
UHGV-1998638_48	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA
UHGV-1998638_48	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-1998638_49	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1998638_49	UniRef90	UniRef90_A0A134C0X6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1998638_49	eggNOG-mapper	220668.lp_2433	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1998638_49	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1998638_49	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1998638_50	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1998638_50	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1998638_50	UniRef90	UniRef90_A0A096BYG4	DNA replication protein DnaC	NA
UHGV-1998638_50	eggNOG-mapper	1401067.HMPREF0872_03455	DNA-dependent DNA replication	NA
UHGV-1998638_50	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1998638_50	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1998638_50	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-1998638_51	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1998638_51	UniRef90	UniRef90_D6KLE8	NA	NA
UHGV-1998638_51	eggNOG-mapper	1401067.HMPREF0872_03460	NA	NA
UHGV-1998638_51	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1998638_51	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1998638_51	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1998638	Yes	39,636 bps	39.25%	100.00%	0.9801
UHGV-0380736	No	39,618 bps	39.25%	100.00%	0.9800
UHGV-1364837	No	39,618 bps	39.25%	100.00%	0.9800
UHGV-0190418	No	39,600 bps	39.24%	100.00%	0.9801
UHGV-1506526	No	39,799 bps	39.27%	99.90%	0.9800
UHGV-0074227	No	39,365 bps	39.31%	99.90%	0.9792
UHGV-2002473	No	39,362 bps	39.31%	99.90%	0.9798
UHGV-1512748	No	38,731 bps	39.32%	99.09%	0.9785
UHGV-1533687	No	38,338 bps	39.22%	98.09%	0.9803
UHGV-1564128	No	16,374 bps	38.59%	41.91%	0.9817
UHGV-1559779	No	11,259 bps	39.04%	28.81%	0.9808