vOTU-003274

Overview

No. of genomes 5

Genome length 49,852 bps

Completeness 100.00% (complete)

Host Romboutsia timonensis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-003274
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00291 › vSUBFAM-01665 › vGENUS-02994 › vSUBGEN-02135 › vOTU-003274
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Peptostreptococcales › Peptostreptococcaceae › Romboutsia › Romboutsia timonensis
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0177503
BioSample	SAMN09781739
Genome length	49,852 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	57
CDS density	90.59%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177503_1	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0177503_1	eggNOG-mapper	935837.JAEK01000054_gene1472	NA	NA
UHGV-0177503_2	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0177503_2	PHROG	phrog_6782	tail fiber protein	tail
UHGV-0177503_2	eggNOG-mapper	545697.HMPREF0216_02867	domain, Protein	NA
UHGV-0177503_2	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0177503_2	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0177503_2	Structural annotation	PF10651	NA	NA
UHGV-0177503_4	COG	COG3953	SLT domain protein	NA
UHGV-0177503_5	UniRef90	UniRef90_UPI0005E01B60	BhlA/UviB family holin-like peptide	NA
UHGV-0177503_5	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0177503_6	PHROG	phrog_16267	NA	unknown function
UHGV-0177503_6	UniRef90	UniRef90_A0A0A7FW02	KID repeat family protein	NA
UHGV-0177503_6	eggNOG-mapper	1347392.CCEZ01000045_gene1	Phage minor structural protein	NA
UHGV-0177503_6	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0177503_6	COG	COG4926	Phage-related protein	NA
UHGV-0177503_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177503_7	PHROG	phrog_435	endolysin	lysis
UHGV-0177503_7	UniRef90	UniRef90_A0A6L5Y0L2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177503_7	eggNOG-mapper	1280689.AUJC01000007_gene3302	Ami_3	NA
UHGV-0177503_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0177503_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177503_7	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0177503_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177503_8	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177503_8	UniRef90	UniRef90_C9KJA0	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0177503_8	eggNOG-mapper	1157490.EL26_23950	Endodeoxyribonuclease RusA	NA
UHGV-0177503_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0177503_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177503_10	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0177503_10	UniRef90	UniRef90_T4V7V8	dUTPase family protein	NA
UHGV-0177503_10	eggNOG-mapper	512564.MCRO_0333	protein conserved in bacteria	NA
UHGV-0177503_10	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0177503_10	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0177503_10	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0177503_12	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-0177503_12	PHROG	phrog_7320	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UHGV-0177503_12	UniRef90	UniRef90_A0A8J8GAS9	Bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA
UHGV-0177503_12	eggNOG-mapper	621372.ACIH01000183_gene3234	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-0177503_12	Pfam	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	THF_DHG_CYH
UHGV-0177503_12	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-0177503_12	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-0177503_12	HAMAP	MF_01576	Bifunctional protein FolD [folD]	NA
UHGV-0177503_12	Structural annotation	PF02882, PF00763, MF_01576, NF010775, COG0190	NA	NA
UHGV-0177503_13	Pfam	PF10957	Sporulation protein Cse60	Spore_Cse60
UHGV-0177503_14	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0177503_14	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177503_14	UniRef90	UniRef90_UPI0010488E2D	PD-(D/E)XK nuclease family protein	NA
UHGV-0177503_14	eggNOG-mapper	406327.Mevan_0085	PFAM UvrD REP helicase	NA
UHGV-0177503_14	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0177503_14	COG	COG0210	Superfamily I DNA or RNA helicase	NA
UHGV-0177503_15	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177503_15	Pfam	PF06467	MYM-type Zinc finger with FCS sequence motif	zf-FCS
UHGV-0177503_15	Structural annotation	PF09889, PF10013, COG3024, COG4338	NA	NA
UHGV-0177503_17	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0177503_17	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0177503_17	UniRef90	UniRef90_A0A8A0RPK1	DNA polymerase III subunit alpha	NA
UHGV-0177503_17	eggNOG-mapper	1158318.ATXC01000002_gene1498	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0177503_17	Pfam	PF02811	PHP domain	PHP
UHGV-0177503_17	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0177503_17	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0177503_17	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0177503_17	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0177503_17	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0177503_17	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0177503_21	PHROG	phrog_236	nucleotide kinase	other
UHGV-0177503_21	UniRef90	UniRef90_A0A6J5KTZ9	SaV-like	NA
UHGV-0177503_21	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0177503_21	Pfam	PF11753	NA	DUF3310
UHGV-0177503_22	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0177503_22	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0177503_22	UniRef90	UniRef90_UPI0010539013	toprim domain-containing protein	NA
UHGV-0177503_22	eggNOG-mapper	1158604.I591_01194	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0177503_22	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0177503_22	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0177503_22	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0177503_22	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0177503_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0177503_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0177503_24	UniRef90	UniRef90_UPI000EBD570D	replicative DNA helicase	NA
UHGV-0177503_24	eggNOG-mapper	1273742.M1HNB2_9CAUD	DNA helicase activity	NA
UHGV-0177503_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0177503_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0177503_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0177503_25	PHROG	phrog_6254	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177503_25	UniRef90	UniRef90_UPI000BF65752	HNH endonuclease	NA
UHGV-0177503_25	eggNOG-mapper	1134413.ANNK01000120_gene2048	response regulator	NA
UHGV-0177503_25	PADLOC	HEase_00033	homing endonuclease	RM
UHGV-0177503_25	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0177503_25	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0177503_25	Structural annotation	PF13392	NA	NA
UHGV-0177503_31	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0177503_32	KOfam	K21029	moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]	NA
UHGV-0177503_32	PHROG	phrog_15670	NA	unknown function
UHGV-0177503_32	UniRef90	UniRef90_UPI0010518C12	ThiF family adenylyltransferase	NA
UHGV-0177503_32	eggNOG-mapper	1033733.CAEK01000015_gene824	Thiamine biosynthesis protein ThiF	NA
UHGV-0177503_32	PADLOC	E1E2_00006	E1-E2	CBASS
UHGV-0177503_32	Pfam	PF00899	ThiF family	ThiF
UHGV-0177503_32	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-0177503_32	Structural annotation	PF00899, MF_03049, NF004281, COG0476	NA	NA
UHGV-0177503_39	Structural annotation	PF14445, PF02318	NA	NA
UHGV-0177503_42	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177503_42	UniRef90	UniRef90_A0A2H4J8J0	Putative HNH endonuclease	NA
UHGV-0177503_42	eggNOG-mapper	212035.YL245_MIMIV	HNH endonuclease	NA
UHGV-0177503_42	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0177503_42	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0177503_42	Structural annotation	PF07463, PF12286	NA	NA
UHGV-0177503_49	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0177503_49	UniRef90	UniRef90_UPI0010482774	helix-turn-helix domain-containing protein	NA
UHGV-0177503_49	eggNOG-mapper	279808.SH2359	NA	NA
UHGV-0177503_50	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0177503_50	PHROG	phrog_38407	NA	unknown function
UHGV-0177503_50	UniRef90	UniRef90_UPI000E6C46F7	DNA packaging protein	NA
UHGV-0177503_50	eggNOG-mapper	935837.JAEK01000054_gene1465	Mu-like prophage FluMu protein gp28	NA
UHGV-0177503_50	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0177503_50	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0177503_51	Pfam	PF11195	NA	DUF2829
UHGV-0177503_51	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0177503_52	PHROG	phrog_156	portal protein	head and packaging
UHGV-0177503_52	UniRef90	UniRef90_A0A1V5WPT3	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0177503_52	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0177503_54	PHROG	phrog_371	major head protein	head and packaging
UHGV-0177503_54	UniRef90	UniRef90_UPI000E6BE03E	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0177503_54	eggNOG-mapper	645991.Sgly_0540	COGs COG4397 Mu-like prophage major head subunit gpT	NA
UHGV-0177503_54	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0177503_54	COG	COG4397	Mu-like prophage major head subunit gpT	NA
UHGV-0177503_54	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0177503	Yes	49,852 bps	31.84%	100.00%	0.9766
UHGV-0199672	No	49,852 bps	31.84%	100.00%	0.9779
UHGV-0174179	No	49,474 bps	31.78%	100.00%	0.9754
UHGV-0188943	No	49,453 bps	31.85%	99.90%	0.9777
UHGV-0184072	No	24,419 bps	31.61%	49.90%	0.9772