vOTU-003494

Overview

vOTU representative UHGV-2046087

No. of genomes 6

Genome length 42,325 bps

Completeness 100.00% (complete)

Host Roseburia inulinivorans

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-003494
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00010 › vSUBFAM-00152 › vGENUS-00084 › vSUBGEN-06445 › vOTU-003494
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Roseburia › Roseburia inulinivorans
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2046087
BioSample	SAMEA2737747
Genome length	42,325 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	74
CDS density	91.90%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2046087_2	PHROG	phrog_398	NA	unknown function
UHGV-2046087_2	UniRef90	UniRef90_A0A4P8IGL9	NA	NA
UHGV-2046087_2	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-2046087_2	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-2046087_2	Structural annotation	PF16784	NA	NA
UHGV-2046087_3	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2046087_3	UniRef90	UniRef90_UPI001C016064	ORF6C domain-containing protein	NA
UHGV-2046087_3	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-2046087_3	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2046087_3	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2046087_3	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2046087_3	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-2046087_4	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2046087_4	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2046087_4	UniRef90	UniRef90_A0A6N3H631	Endodeoxyribonuclease RusA	NA
UHGV-2046087_4	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-2046087_4	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2046087_5	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2046087_5	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-2046087_5	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-2046087_5	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-2046087_6	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2046087_6	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2046087_6	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-2046087_6	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-2046087_6	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2046087_6	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2046087_6	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-2046087_10	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-2046087_11	PHROG	phrog_98	NA	unknown function
UHGV-2046087_11	UniRef90	UniRef90_A0A412FGY3	YopX domain-containing protein	NA
UHGV-2046087_11	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-2046087_11	Pfam	PF09643	YopX protein	YopX
UHGV-2046087_11	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2046087_11	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2046087_13	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2046087_13	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-2046087_13	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-2046087_13	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2046087_13	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-2046087_13	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2046087_14	PHROG	phrog_20593	NA	unknown function
UHGV-2046087_15	PHROG	phrog_874	NA	unknown function
UHGV-2046087_15	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-2046087_15	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-2046087_15	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2046087_17	UniRef90	UniRef90_UPI001C01D3C5	NA	NA
UHGV-2046087_17	eggNOG-mapper	622312.ROSEINA2194_04464	NA	NA
UHGV-2046087_17	Pfam	PF14199	NA	DUF4317
UHGV-2046087_17	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-2046087_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2046087_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2046087_18	UniRef90	UniRef90_A0A412KF70	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2046087_18	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-2046087_18	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2046087_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2046087_18	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2046087_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2046087_18	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2046087_19	PHROG	phrog_17284	NA	unknown function
UHGV-2046087_19	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2046087_19	eggNOG-mapper	1121115.AXVN01000007_gene3542	C-5 cytosine-specific DNA methylase	NA
UHGV-2046087_19	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-2046087_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2046087_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2046087_22	UniRef90	UniRef90_UPI00129E4C6A	NA	NA
UHGV-2046087_23	eggNOG-mapper	1117958.PE143B_0129235	NA	NA
UHGV-2046087_25	UniRef90	UniRef90_A0A412KFA7	ABC transporter ATP-binding protein	NA
UHGV-2046087_26	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2046087_26	UniRef90	UniRef90_A0A3R5WW48	XRE family transcriptional regulator	NA
UHGV-2046087_26	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2046087_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2046087_26	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2046087_29	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2046087_29	eggNOG-mapper	478749.BRYFOR_07651	NA	NA
UHGV-2046087_29	Structural annotation	TIGR03826	NA	NA
UHGV-2046087_30	PHROG	phrog_33130	NA	unknown function
UHGV-2046087_30	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-2046087_30	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2046087_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2046087_32	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2046087_32	UniRef90	UniRef90_A0A3R5WSV0	Terminase_3 domain-containing protein	NA
UHGV-2046087_32	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2046087_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2046087_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2046087_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-2046087_32	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2046087_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-2046087_33	UniRef90	UniRef90_A0A3R5WTT1	Phage capsid protein	NA
UHGV-2046087_33	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-2046087_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2046087_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2046087_35	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-2046087_35	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2046087_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2046087_35	Structural annotation	PF11114	NA	NA
UHGV-2046087_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2046087_36	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-2046087_36	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-2046087_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2046087_36	COG	COG2369	NA	NA
UHGV-2046087_36	Structural annotation	PF06152	NA	NA
UHGV-2046087_37	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-2046087_37	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-2046087_38	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-2046087_39	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-2046087_40	PHROG	phrog_16490	NA	unknown function
UHGV-2046087_40	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-2046087_41	PHROG	phrog_20016	NA	unknown function
UHGV-2046087_41	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2046087_41	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2046087_41	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2046087_42	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-2046087_43	PHROG	phrog_1233	NA	unknown function
UHGV-2046087_43	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-2046087_43	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-2046087_43	Structural annotation	PF20352, COG2856	NA	NA
UHGV-2046087_45	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2046087_45	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-2046087_45	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-2046087_45	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2046087_46	PHROG	phrog_544	major head protein	head and packaging
UHGV-2046087_46	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-2046087_46	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-2046087_46	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2046087_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2046087_47	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2046087_48	PHROG	phrog_3366	NA	unknown function
UHGV-2046087_48	eggNOG-mapper	1235790.C805_00078	NA	NA
UHGV-2046087_48	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2046087_49	Structural annotation	PF12691	NA	NA
UHGV-2046087_50	PHROG	phrog_3099	NA	unknown function
UHGV-2046087_50	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-2046087_50	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2046087_51	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-2046087_51	Structural annotation	PF10666	NA	NA
UHGV-2046087_52	PHROG	phrog_706	NA	unknown function
UHGV-2046087_52	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-2046087_52	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-2046087_52	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2046087_52	Structural annotation	PF06854	NA	NA
UHGV-2046087_53	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2046087_53	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-2046087_53	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2046087_54	PHROG	phrog_1194	NA	unknown function
UHGV-2046087_54	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-2046087_54	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2046087_55	PHROG	phrog_13879	NA	unknown function
UHGV-2046087_55	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-2046087_55	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2046087_57	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-2046087_57	PHROG	phrog_11157	NA	unknown function
UHGV-2046087_57	UniRef90	UniRef90_A0A416HMQ3	Big_13 domain-containing protein	NA
UHGV-2046087_57	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-2046087_57	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-2046087_57	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-2046087_57	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-2046087_58	PHROG	phrog_18725	NA	unknown function
UHGV-2046087_58	Structural annotation	PF13754, COG2372	NA	NA
UHGV-2046087_60	PHROG	phrog_4105	NA	unknown function
UHGV-2046087_60	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2046087_61	PHROG	phrog_1129	holin	lysis
UHGV-2046087_61	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-2046087_61	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2046087_61	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2046087_61	Structural annotation	PF06946	NA	NA
UHGV-2046087_62	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2046087_62	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-2046087_62	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-2046087_62	Structural annotation	PF14359	NA	NA
UHGV-2046087_63	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2046087_63	PHROG	phrog_435	endolysin	lysis
UHGV-2046087_63	UniRef90	UniRef90_A0A1Q6KI91	SPOR domain-containing protein	NA
UHGV-2046087_63	eggNOG-mapper	33035.JPJF01000090_gene96	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2046087_63	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2046087_63	Pfam	PF05036	SPOR domain	SPOR
UHGV-2046087_63	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2046087_63	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-2046087_64	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2046087_64	PHROG	phrog_95	integrase	integration and excision
UHGV-2046087_64	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-2046087_64	eggNOG-mapper	1235799.C818_04182	Resolvase, N terminal domain	NA
UHGV-2046087_64	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2046087_64	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2046087_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2046087_64	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-2046087_65	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-2046087_65	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-2046087_65	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-2046087_65	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-2046087_65	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-2046087_67	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2046087_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2046087_67	UniRef90	UniRef90_A0A3R5Z350	XRE family transcriptional regulator	NA
UHGV-2046087_67	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-2046087_67	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2046087_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2046087_67	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2046087_67	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2046087_70	Structural annotation	PF11127	NA	NA
UHGV-2046087_72	Structural annotation	PF15513, NF007469	NA	NA
UHGV-2046087_74	PHROG	phrog_14970	NA	unknown function
UHGV-2046087_74	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-2046087_74	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-2046087_74	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2046087_74	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2046087	Yes	42,325 bps	38.72%	100.00%	0.9814
UHGV-1359499	No	42,325 bps	38.72%	100.00%	0.9816
UHGV-0080995	No	40,698 bps	38.60%	96.54%	0.9811
UHGV-0181548	No	36,317 bps	38.99%	86.13%	0.9819
UHGV-2051752	No	10,524 bps	39.55%	24.98%	0.9821
UHGV-1841227	No	10,012 bps	38.68%	23.74%	0.9795