vOTU-004129

Overview

vOTU representative UHGV-0207205

No. of genomes 2

Genome length 45,257 bps

Completeness 100.00% (complete)

Host Agathobaculum

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-004129
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00118 › vGENUS-00957 › vSUBGEN-18177 › vOTU-004129
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Butyricicoccaceae › Agathobaculum
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0207205
BioSample	NA
Genome length	45,257 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	71
CDS density	90.03%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0207205_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0207205_1	eggNOG-mapper	1027292.HMPREF9372_1273	NA	NA
UHGV-0207205_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0207205_1	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0207205_3	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0207205_8	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0207205_8	Pfam	PF04448	NA	DUF551
UHGV-0207205_12	KOfam	K24451	zim; modification methylase	NA
UHGV-0207205_12	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0207205_12	UniRef90	UniRef90_A0A1M4M4T9	Methyltransferase	NA
UHGV-0207205_12	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-0207205_12	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0207205_12	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0207205_12	COG	COG0863	DNA modification methylase	NA
UHGV-0207205_12	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0207205_13	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0207205_13	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0207205_13	UniRef90	UniRef90_A0A1M4M4U0	DNA methylase N-4/N-6 domain protein	NA
UHGV-0207205_13	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-0207205_13	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0207205_13	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0207205_13	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0207205_13	Structural annotation	PF04851, PF16203, MF_01821, NF003426, COG0553	NA	NA
UHGV-0207205_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0207205_14	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0207205_14	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0207205_14	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0207205_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0207205_14	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0207205_16	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0207205_16	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0207205_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0207205_16	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0207205_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0207205_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0207205_17	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-0207205_17	eggNOG-mapper	1203606.HMPREF1526_02270	Single-stranded DNA-binding protein	NA
UHGV-0207205_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0207205_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0207205_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0207205_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0207205_17	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0207205_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0207205_18	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0207205_18	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-0207205_18	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0207205_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0207205_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0207205_19	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0207205_19	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0207205_19	Structural annotation	PF05772	NA	NA
UHGV-0207205_20	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0207205_20	UniRef90	UniRef90_A0A7U9PED5	ERF superfamily protein	NA
UHGV-0207205_20	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0207205_20	Pfam	PF04404	ERF superfamily	ERF
UHGV-0207205_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0207205_20	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0207205_21	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0207205_21	UniRef90	UniRef90_UPI00164A4E04	siphovirus Gp157 family protein	NA
UHGV-0207205_21	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0207205_21	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0207205_21	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0207205_24	PHROG	phrog_4433	NA	unknown function
UHGV-0207205_24	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0207205_24	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0207205_25	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0207205_25	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0207205_28	Structural annotation	COG3311	NA	NA
UHGV-0207205_33	UniRef90	UniRef90_A0A357NGY1	XRE family transcriptional regulator	NA
UHGV-0207205_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0207205_34	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0207205_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0207205_34	UniRef90	UniRef90_A0A417H7V1	XRE family transcriptional regulator	NA
UHGV-0207205_34	eggNOG-mapper	742740.HMPREF9474_04360	Pou domain - N-terminal to homeobox domain	NA
UHGV-0207205_34	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0207205_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0207205_34	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0207205_34	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0207205_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0207205_36	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0207205_36	UniRef90	UniRef90_A0A7I8D1Y4	Putative P1-type antirepressor - phage associated	NA
UHGV-0207205_36	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0207205_36	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0207205_36	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0207205_36	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0207205_36	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0207205_37	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0207205_38	KOfam	K14059	int; integrase	NA
UHGV-0207205_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0207205_38	UniRef90	UniRef90_A0A845MUP0	Tyrosine-type recombinase/integrase	NA
UHGV-0207205_38	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0207205_38	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0207205_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0207205_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0207205_38	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0207205_39	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0207205_39	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0207205_39	UniRef90	UniRef90_A0A417HW04	M23 family peptidase	NA
UHGV-0207205_39	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0207205_39	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0207205_39	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0207205_41	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0207205_42	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0207205_43	PHROG	phrog_16490	NA	unknown function
UHGV-0207205_43	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0207205_44	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0207205_45	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0207205_47	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0207205_47	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0207205_47	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0207205_48	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0207205_48	PHROG	phrog_670	endolysin	lysis
UHGV-0207205_48	UniRef90	UniRef90_A0A2V2FIF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0207205_48	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0207205_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0207205_48	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0207205_48	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0207205_49	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0207205_49	UniRef90	UniRef90_A0A3A9J0H5	NA	NA
UHGV-0207205_49	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0207205_49	Pfam	PF14359	NA	DUF4406
UHGV-0207205_49	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0207205_50	PHROG	phrog_297	holin	lysis
UHGV-0207205_50	UniRef90	UniRef90_A0A417HAK5	Phage holin	NA
UHGV-0207205_50	eggNOG-mapper	1408437.JNJN01000039_gene392	COG COG5546 Small integral membrane protein	NA
UHGV-0207205_50	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0207205_50	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0207205_50	COG	COG5546	NA	NA
UHGV-0207205_50	Structural annotation	COG5546	NA	NA
UHGV-0207205_51	PHROG	phrog_1863	NA	unknown function
UHGV-0207205_51	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0207205_51	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0207205_53	PHROG	phrog_2310	NA	unknown function
UHGV-0207205_54	PHROG	phrog_24451	NA	unknown function
UHGV-0207205_54	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0207205_55	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0207205_55	PHROG	phrog_819	tail protein	tail
UHGV-0207205_55	eggNOG-mapper	1408437.JNJN01000030_gene1051	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0207205_55	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0207205_55	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0207205_56	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0207205_56	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0207205_56	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0207205_57	PHROG	phrog_13046	NA	unknown function
UHGV-0207205_57	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0207205_57	Structural annotation	PF20387	NA	NA
UHGV-0207205_58	PHROG	phrog_371	major head protein	head and packaging
UHGV-0207205_58	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0207205_58	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0207205_58	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0207205_59	PHROG	phrog_24113	NA	unknown function
UHGV-0207205_59	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0207205_59	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0207205_60	PHROG	phrog_35275	NA	unknown function
UHGV-0207205_60	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0207205_63	PHROG	phrog_156	portal protein	head and packaging
UHGV-0207205_63	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0207205_63	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0207205_64	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0207205_64	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0207205_64	UniRef90	UniRef90_A0A417HVY4	PBSX family phage terminase large subunit	NA
UHGV-0207205_64	eggNOG-mapper	445971.ANASTE_00711	Phage terminase, large subunit, PBSX family	NA
UHGV-0207205_64	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0207205_64	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0207205_64	COG	COG1783	Phage terminase large subunit	NA
UHGV-0207205_64	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0207205_65	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0207205_65	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0207205_65	UniRef90	UniRef90_A0A2V2FED9	Terminase small subunit	NA
UHGV-0207205_65	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0207205_65	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0207205_65	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0207205_65	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0207205_66	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0207205_69	PHROG	phrog_23592	NA	unknown function
UHGV-0207205_69	eggNOG-mapper	642492.Clole_2778	NA	NA
UHGV-0207205_69	Structural annotation	PF20829	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0207205	Yes	45,257 bps	54.92%	100.00%	0.9790
UHGV-0182346	No	45,106 bps	54.90%	100.00%	0.9799