vOTU-004477

Overview

vOTU representative UHGV-0190956

No. of genomes 20

Genome length 43,330 bps

Completeness 100.00% (complete)

Host Faecalibacterium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-004477
Number of genomes	20
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00013 › vGENUS-00034 › vSUBGEN-42470 › vOTU-004477
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Faecalibacterium
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0190956
BioSample	SAMEA2580088
Genome length	43,330 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	76
CDS density	87.83%
tRNA count	4
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190956_2	PHROG	phrog_4433	NA	unknown function
UHGV-0190956_2	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0190956_2	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0190956_3	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0190956_3	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0190956_4	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0190956_4	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0190956_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0190956_5	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0190956_5	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0190956_5	eggNOG-mapper	1230342.CTM_16892	Phage antirepressor protein	NA
UHGV-0190956_5	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0190956_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0190956_5	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0190956_5	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0190956_6	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0190956_6	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0190956_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0190956_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190956_8	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0190956_8	eggNOG-mapper	1268072.PSAB_01325	Transcriptional regulator	NA
UHGV-0190956_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190956_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0190956_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0190956_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190956_9	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0190956_9	eggNOG-mapper	428125.CLOLEP_02738	SMART helix-turn-helix domain protein	NA
UHGV-0190956_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190956_9	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0190956_11	UniRef90	UniRef90_A0A1W2B3I7	Ig-like domain (Group 2)	NA
UHGV-0190956_11	eggNOG-mapper	321955.AAGP01000017_gene2211	NA	NA
UHGV-0190956_11	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0190956_14	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0190956_14	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0190956_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190956_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190956_14	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0190956_15	KOfam	K14059	int; integrase	NA
UHGV-0190956_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0190956_15	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0190956_15	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0190956_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190956_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0190956_15	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0190956_17	Structural annotation	PF12510	NA	NA
UHGV-0190956_18	PHROG	phrog_20016	NA	unknown function
UHGV-0190956_18	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0190956_18	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0190956_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0190956_20	PHROG	phrog_16490	NA	unknown function
UHGV-0190956_20	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0190956_21	PHROG	phrog_22984	NA	unknown function
UHGV-0190956_22	PHROG	phrog_21718	NA	unknown function
UHGV-0190956_22	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0190956_23	PHROG	phrog_3754	NA	unknown function
UHGV-0190956_23	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0190956_25	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0190956_25	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0190956_27	COG	COG1670	Protein N-acetyltransferase, RimJ/RimL family	NA
UHGV-0190956_27	Structural annotation	PF11039, MF_02210, NF000360, COG3981	NA	NA
UHGV-0190956_28	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0190956_31	Structural annotation	PF07870, MF_01506	NA	NA
UHGV-0190956_32	PHROG	phrog_15303	NA	unknown function
UHGV-0190956_32	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0190956_34	KOfam	K07273	acm; lysozyme	NA
UHGV-0190956_34	PHROG	phrog_291	endolysin	lysis
UHGV-0190956_34	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0190956_34	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0190956_34	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0190956_34	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0190956_34	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0190956_35	PHROG	phrog_1382	NA	unknown function
UHGV-0190956_35	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-0190956_37	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0190956_37	COG	COG5492	NA	NA
UHGV-0190956_38	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0190956_39	PHROG	phrog_3558	tail protein	tail
UHGV-0190956_39	UniRef90	UniRef90_UPI0013DF37AE	phage tail protein	NA
UHGV-0190956_39	eggNOG-mapper	1035184.HMPREF1042_1326	Prophage endopeptidase tail	NA
UHGV-0190956_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0190956_39	COG	COG4926	Phage-related protein	NA
UHGV-0190956_39	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0190956_40	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0190956_40	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0190956_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0190956_40	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0190956_41	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0190956_41	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0190956_41	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0190956_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0190956_41	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0190956_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0190956_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0190956_44	PHROG	phrog_885	major tail protein	tail
UHGV-0190956_44	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0190956_44	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0190956_45	Structural annotation	PF13554	NA	NA
UHGV-0190956_46	PHROG	phrog_17977	NA	unknown function
UHGV-0190956_46	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0190956_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0190956_48	PHROG	phrog_247	major head protein	head and packaging
UHGV-0190956_48	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0190956_48	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0190956_48	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0190956_49	UniRef90	UniRef90_A0A174AAF6	Clp R domain-containing protein	NA
UHGV-0190956_49	Structural annotation	PF06810	NA	NA
UHGV-0190956_50	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0190956_50	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0190956_50	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0190956_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0190956_52	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0190956_52	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0190956_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0190956_52	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0190956_52	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0190956_53	PHROG	phrog_8680	NA	unknown function
UHGV-0190956_53	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0190956_53	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0190956_53	Pfam	PF14386	NA	DUF4417
UHGV-0190956_53	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0190956_53	Structural annotation	PF14386	NA	NA
UHGV-0190956_54	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0190956_54	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0190956_54	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0190956_54	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0190956_54	COG	COG2369	NA	NA
UHGV-0190956_54	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0190956_55	PHROG	phrog_64	portal protein	head and packaging
UHGV-0190956_55	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0190956_55	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0190956_55	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0190956_55	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0190956_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190956_56	PHROG	phrog_10250	NA	unknown function
UHGV-0190956_56	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0190956_56	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0190956_56	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0190956_56	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0190956_56	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0190956_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-0190956_56	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0190956_57	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0190956_57	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-0190956_57	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0190956_57	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0190956_57	Structural annotation	PF16677	NA	NA
UHGV-0190956_58	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0190956_58	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0190956_60	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0190956_60	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0190956_60	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0190956_60	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0190956_60	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0190956_60	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0190956_60	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0190956_61	PHROG	phrog_3136	NA	unknown function
UHGV-0190956_61	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0190956_61	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0190956_61	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0190956_63	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0190956_63	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0190956_63	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0190956_63	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0190956_64	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0190956_64	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0190956_64	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0190956_64	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0190956_67	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0190956_67	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0190956_67	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0190956_67	eggNOG-mapper	877411.JMMA01000002_gene2052	NA	NA
UHGV-0190956_67	Pfam	PF19808	NA	DUF6291
UHGV-0190956_67	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0190956_67	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0190956_67	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0190956_68	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0190956_68	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0190956_68	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0190956_68	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0190956_68	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190956_68	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0190956_68	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0190956_68	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0190956_68	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0190956_69	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0190956_69	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0190956_69	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0190956_69	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0190956_71	Structural annotation	PF14120	NA	NA
UHGV-0190956_74	Structural annotation	PF09537	NA	NA
UHGV-0190956_75	Structural annotation	PF12270, NF040944	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0190956	Yes	43,330 bps	53.28%	100.00%	0.9813
UHGV-0356172	No	43,032 bps	53.61%	100.00%	0.9807
UHGV-0125947	No	47,612 bps	53.94%	99.90%	0.9793
UHGV-1993324	No	43,536 bps	53.30%	99.90%	0.9813
UHGV-0173619	No	42,263 bps	53.62%	99.90%	0.9815
UHGV-0104476	No	38,339 bps	54.10%	90.70%	0.9809
UHGV-1543973	No	37,419 bps	53.97%	88.52%	0.9809
UHGV-1428013	No	35,764 bps	53.88%	84.62%	0.9818
UHGV-0069832	No	32,209 bps	53.12%	76.15%	0.9817
UHGV-1438121	No	32,209 bps	53.12%	76.15%	0.9817
UHGV-1385940	No	30,230 bps	54.35%	71.56%	0.9829
UHGV-1404396	No	27,222 bps	54.96%	64.46%	0.9818
UHGV-1484374	No	26,513 bps	53.91%	62.76%	0.9810
UHGV-1444951	No	24,759 bps	54.27%	58.61%	0.9829
UHGV-1773822	No	15,368 bps	54.13%	36.29%	0.9826
UHGV-1647569	No	14,516 bps	54.42%	34.34%	0.9804
UHGV-1706042	No	12,964 bps	52.09%	30.60%	0.9756
UHGV-0068370	No	12,276 bps	54.13%	29.07%	0.9821
UHGV-0104558	No	10,888 bps	53.12%	25.70%	0.9818
UHGV-1659504	No	10,083 bps	53.10%	23.65%	0.9827