vOTU-004642

Overview

vOTU representative UHGV-2023831

No. of genomes 8

Genome length 33,809 bps

Completeness 100.00% (complete)

Host CAG-83

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-004642
Number of genomes	8
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-00200 › vGENUS-00304 › vSUBGEN-00472 › vOTU-004642
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › CAG-83
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2023831
BioSample	SAMEA2737753
Genome length	33,809 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	53
CDS density	93.40%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2023831_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2023831_1	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2023831_1	UniRef90	UniRef90_UPI0019565003	helix-turn-helix transcriptional regulator	NA
UHGV-2023831_1	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-2023831_1	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2023831_1	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2023831_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2023831_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2023831_2	UniRef90	UniRef90_A0A316PCA6	XRE family transcriptional regulator	NA
UHGV-2023831_2	eggNOG-mapper	1410650.JHWL01000006_gene1493	sequence-specific DNA binding	NA
UHGV-2023831_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2023831_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2023831_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2023831_3	UniRef90	UniRef90_A0A1C5PF11	HTH cro/C1-type domain-containing protein	NA
UHGV-2023831_3	eggNOG-mapper	1226322.HMPREF1545_02466	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2023831_3	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-2023831_4	Structural annotation	PF14947, NF041230, COG3432	NA	NA
UHGV-2023831_6	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-2023831_6	eggNOG-mapper	1226322.HMPREF1545_02463	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2023831_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2023831_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2023831_6	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-2023831_8	PHROG	phrog_7115	NA	unknown function
UHGV-2023831_8	UniRef90	UniRef90_A0A316RLB8	Cytoplasmic protein	NA
UHGV-2023831_8	eggNOG-mapper	321846.PS417_23300	Bacterial PH domain	NA
UHGV-2023831_8	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-2023831_8	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-2023831_9	KOfam	K14059	int; integrase	NA
UHGV-2023831_9	PHROG	phrog_1	integrase	integration and excision
UHGV-2023831_9	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-2023831_9	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-2023831_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2023831_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2023831_9	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2023831_10	PHROG	phrog_25567	NA	unknown function
UHGV-2023831_10	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-2023831_10	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-2023831_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2023831_10	Structural annotation	NF040522, COG2944	NA	NA
UHGV-2023831_14	KOfam	K22519	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	NA
UHGV-2023831_14	PHROG	phrog_1493	endolysin	lysis
UHGV-2023831_14	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-2023831_14	eggNOG-mapper	994573.T472_0212035	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2023831_14	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2023831_14	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2023831_14	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2023831_14	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-2023831_15	PHROG	phrog_881	holin	lysis
UHGV-2023831_15	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-2023831_15	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-2023831_15	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-2023831_15	Structural annotation	PF16938, COG3237	NA	NA
UHGV-2023831_16	PHROG	phrog_4105	NA	unknown function
UHGV-2023831_16	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-2023831_16	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-2023831_17	UniRef90	UniRef90_A0A417BX67	Chitin-binding type-3 domain-containing protein	NA
UHGV-2023831_17	Structural annotation	PF10651, TIGR02059	NA	NA
UHGV-2023831_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2023831_18	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-2023831_18	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-2023831_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2023831_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2023831_18	COG	COG4926	Phage-related protein	NA
UHGV-2023831_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2023831_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2023831_19	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-2023831_19	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-2023831_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-2023831_19	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2023831_20	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-2023831_20	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-2023831_20	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-2023831_20	COG	COG5283	Phage-related tail protein	NA
UHGV-2023831_20	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-2023831_23	PHROG	phrog_88	major tail protein	tail
UHGV-2023831_23	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-2023831_23	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-2023831_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2023831_23	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2023831_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2023831_24	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-2023831_24	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-2023831_24	Structural annotation	TIGR01725	NA	NA
UHGV-2023831_25	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-2023831_25	Structural annotation	PF05657	NA	NA
UHGV-2023831_26	PHROG	phrog_19734	NA	unknown function
UHGV-2023831_26	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-2023831_26	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-2023831_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2023831_27	PHROG	phrog_749	NA	unknown function
UHGV-2023831_27	UniRef90	UniRef90_UPI001C0FB8A8	head-tail connector protein	NA
UHGV-2023831_27	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-2023831_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-2023831_28	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-2023831_28	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-2023831_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2023831_28	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-2023831_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2023831_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2023831_28	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2023831_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2023831_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2023831_29	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2023831_29	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-2023831_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2023831_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2023831_29	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2023831_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-2023831_30	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-2023831_30	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-2023831_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2023831_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2023831_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2023831_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2023831_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2023831_31	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-2023831_31	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-2023831_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2023831_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2023831_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2023831_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2023831_32	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2023831_32	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-2023831_32	eggNOG-mapper	1265845.PWEIH_00610	Phage terminase, small subunit	NA
UHGV-2023831_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2023831_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2023831_33	UniRef90	UniRef90_A0A179D645	Radical SAM protein	NA
UHGV-2023831_33	eggNOG-mapper	647113.Metok_1579	SMART Elongator protein 3 MiaB NifB	NA
UHGV-2023831_33	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2023831_33	Structural annotation	PF02310, MF_01864, TIGR03960, COG1032	NA	NA
UHGV-2023831_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2023831_34	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2023831_34	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-2023831_34	eggNOG-mapper	173707.Q938L7_9CAUD	helicase activity	NA
UHGV-2023831_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2023831_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2023831_34	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2023831_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2023831_35	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-2023831_35	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-2023831_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2023831_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2023831_36	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-2023831_36	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-2023831_36	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-2023831_36	Structural annotation	PF14205	NA	NA
UHGV-2023831_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2023831_37	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-2023831_37	Structural annotation	PF01446	NA	NA
UHGV-2023831_42	PHROG	phrog_38832	NA	unknown function
UHGV-2023831_42	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-2023831_43	PHROG	phrog_7704	NA	unknown function
UHGV-2023831_43	UniRef90	UniRef90_A0A6B5QVD1	NA	NA
UHGV-2023831_43	Pfam	PF04448	NA	DUF551
UHGV-2023831_46	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2023831_46	PHROG	phrog_27290	NA	unknown function
UHGV-2023831_46	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-2023831_46	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-2023831_46	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2023831_46	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2023831_46	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2023831_47	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2023831_47	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2023831_47	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-2023831_47	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-2023831_47	Pfam	PF13614	AAA domain	AAA_31
UHGV-2023831_47	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2023831_47	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2023831_49	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2023831_49	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2023831_49	UniRef90	UniRef90_U2SBV6	DNA helicase	NA
UHGV-2023831_49	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-2023831_49	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2023831_49	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2023831_49	COG	COG0305	Replicative DNA helicase	NA
UHGV-2023831_49	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-2023831_50	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2023831_50	UniRef90	UniRef90_UPI001F170B82	helix-turn-helix domain-containing protein	NA
UHGV-2023831_50	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-2023831_50	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2023831_50	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2023831_50	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-2023831_51	Structural annotation	PF21327	NA	NA
UHGV-2023831_53	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-2023831_53	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2023831	Yes	33,809 bps	60.66%	100.00%	0.9779
UHGV-0206047	No	33,714 bps	60.71%	100.00%	0.9766
UHGV-1867775	No	33,881 bps	60.64%	99.12%	0.9768
UHGV-0081451	No	22,573 bps	60.24%	66.05%	0.9765
UHGV-0183925	No	22,573 bps	60.24%	66.05%	0.9771
UHGV-1527128	No	18,050 bps	60.78%	52.82%	0.9832
UHGV-2043330	No	15,390 bps	61.10%	45.07%	0.9826
UHGV-0068875	No	13,640 bps	60.59%	39.92%	0.9788