vOTU-004841

Overview

vOTU representative UHGV-2040395

No. of genomes 7

Genome length 42,569 bps

Completeness 100.00% (complete)

Host CAG-170 sp000432135

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-004841
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-00060 › vGENUS-00089 › vSUBGEN-41231 › vOTU-004841
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › CAG-170 › CAG-170 sp000432135
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2040395
BioSample	SAMEA2737818
Genome length	42,569 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	54
CDS density	93.01%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2040395_1	PHROG	phrog_156	portal protein	head and packaging
UHGV-2040395_1	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-2040395_1	Structural annotation	PF16510, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-2040395_5	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2040395_5	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-2040395_5	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-2040395_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2040395_6	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2040395_6	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-2040395_6	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-2040395_6	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2040395_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-2040395_6	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2040395_7	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2040395_7	UniRef90	UniRef90_UPI001D0F42E6	DNA-packaging protein	NA
UHGV-2040395_7	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-2040395_7	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2040395_7	Structural annotation	PF16677	NA	NA
UHGV-2040395_8	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2040395_8	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-2040395_8	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-2040395_11	Structural annotation	PF10013	NA	NA
UHGV-2040395_13	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2040395_13	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-2040395_13	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-2040395_13	Pfam	PF06356	NA	DUF1064
UHGV-2040395_13	Structural annotation	PF06356, NF033179	NA	NA
UHGV-2040395_15	PHROG	phrog_38832	NA	unknown function
UHGV-2040395_15	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-2040395_16	PHROG	phrog_3136	NA	unknown function
UHGV-2040395_16	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-2040395_16	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-2040395_16	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2040395_16	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-2040395_17	Pfam	PF04448	NA	DUF551
UHGV-2040395_18	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2040395_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2040395_18	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2040395_18	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2040395_18	PADLOC	BrxP_00001	BrxP	BREX
UHGV-2040395_18	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2040395_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2040395_18	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-2040395_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2040395_19	PHROG	phrog_363	DNA methyltransferase	other
UHGV-2040395_19	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-2040395_19	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2040395_19	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2040395_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2040395_19	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2040395_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2040395_19	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2040395_23	Structural annotation	PF05082	NA	NA
UHGV-2040395_24	Structural annotation	NF041247	NA	NA
UHGV-2040395_26	Structural annotation	PF10548	NA	NA
UHGV-2040395_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2040395_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2040395_31	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-2040395_31	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-2040395_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2040395_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2040395_31	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2040395_32	eggNOG-mapper	471855.Shel_04260	dextransucrase activity	NA
UHGV-2040395_32	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-2040395_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2040395_34	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-2040395_35	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2040395_35	PHROG	phrog_95	integrase	integration and excision
UHGV-2040395_35	UniRef90	UniRef90_UPI001959E5F7	recombinase family protein	NA
UHGV-2040395_35	eggNOG-mapper	1121344.JHZO01000001_gene439	resolvase	NA
UHGV-2040395_35	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2040395_35	Pfam	PF07508	Recombinase	Recombinase
UHGV-2040395_35	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2040395_35	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2040395_35	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2040395_36	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-2040395_36	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-2040395_37	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2040395_38	PHROG	phrog_16490	NA	unknown function
UHGV-2040395_38	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-2040395_41	UniRef90	UniRef90_A0A137SQ04	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2040395_41	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2040395_41	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2040395_41	Structural annotation	NF033743	NA	NA
UHGV-2040395_42	PHROG	phrog_6918	holin	lysis
UHGV-2040395_42	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-2040395_42	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-2040395_42	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-2040395_42	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-2040395_45	PHROG	phrog_937	hemolysin	other
UHGV-2040395_45	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-2040395_46	PHROG	phrog_37900	NA	unknown function
UHGV-2040395_46	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-2040395_46	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-2040395_46	Pfam	PF19789	NA	DUF6273
UHGV-2040395_46	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-2040395_46	Structural annotation	PF19789, PF13620, NF033708	NA	NA
UHGV-2040395_47	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2040395_47	PHROG	phrog_819	tail protein	tail
UHGV-2040395_47	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-2040395_47	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2040395_47	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2040395_47	Structural annotation	PF06903	NA	NA
UHGV-2040395_48	Structural annotation	PF01835, NF005176, COG5456	NA	NA
UHGV-2040395_49	PHROG	phrog_22978	NA	unknown function
UHGV-2040395_49	UniRef90	UniRef90_A0A3D4D8G0	PBECR5 domain-containing protein	NA
UHGV-2040395_49	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-2040395_49	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-2040395_49	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-2040395_50	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-2040395_50	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-2040395_51	PHROG	phrog_12105	NA	unknown function
UHGV-2040395_51	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-2040395_53	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2040395_53	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-2040395_53	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-2040395_53	Pfam	PF13252	NA	DUF4043
UHGV-2040395_53	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2040395_53	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2040395_54	PHROG	phrog_13908	NA	unknown function
UHGV-2040395_54	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2040395	Yes	42,569 bps	58.48%	100.00%	0.9806
UHGV-1373180	No	42,569 bps	58.48%	100.00%	0.9808
UHGV-0214209	No	24,631 bps	59.57%	58.71%	0.9816
UHGV-1423164	No	23,212 bps	59.28%	55.41%	0.9819
UHGV-1663653	No	18,463 bps	59.51%	44.01%	0.9793
UHGV-1732120	No	17,861 bps	59.61%	42.64%	0.9808
UHGV-1595091	No	11,580 bps	59.84%	27.49%	0.9812