vOTU-004976

Overview

vOTU representative UHGV-1371944

No. of genomes 3

Genome length 44,815 bps

Completeness 100.00% (complete)

Host Flavonifractor plautii

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-004976
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-01055 › vGENUS-11002 › vSUBGEN-15165 › vOTU-004976
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › Flavonifractor › Flavonifractor plautii
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1371944
BioSample	SAMN05826956
Genome length	44,815 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	63
CDS density	92.16%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1371944_1	PHROG	phrog_1029	NA	unknown function
UHGV-1371944_1	eggNOG-mapper	1519439.JPJG01000059_gene1911	NA	NA
UHGV-1371944_1	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1371944_2	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1371944_2	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-1371944_2	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-1371944_4	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-1371944_6	PHROG	phrog_16447	NA	unknown function
UHGV-1371944_6	UniRef90	UniRef90_UPI00157048F8	NA	NA
UHGV-1371944_6	eggNOG-mapper	272562.CA_C1943	NA	NA
UHGV-1371944_6	Pfam	PF10083	NA	DUF2321
UHGV-1371944_6	COG	COG4306	NA	NA
UHGV-1371944_6	Structural annotation	PF10083, COG4306	NA	NA
UHGV-1371944_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1371944_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1371944_7	UniRef90	UniRef90_A0A6A8VIS0	Helix-turn-helix domain-containing protein	NA
UHGV-1371944_7	eggNOG-mapper	935948.KE386495_gene1211	Helix-turn-helix XRE-family like proteins	NA
UHGV-1371944_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1371944_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1371944_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1371944_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1371944_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1371944_8	UniRef90	UniRef90_A0A174D5Y8	HTH-type transcriptional regulator immR	NA
UHGV-1371944_8	eggNOG-mapper	1169144.KB910924_gene359	Helix-turn-helix XRE-family like proteins	NA
UHGV-1371944_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1371944_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1371944_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1371944_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1371944_9	PHROG	phrog_87	metallo-protease	other
UHGV-1371944_9	UniRef90	UniRef90_A0A174DB16	Metallopeptidase immA	NA
UHGV-1371944_9	eggNOG-mapper	717606.PaecuDRAFT_3093	IrrE N-terminal-like domain	NA
UHGV-1371944_9	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1371944_9	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1371944_9	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1371944_10	PHROG	phrog_14556	NA	unknown function
UHGV-1371944_10	eggNOG-mapper	696281.Desru_2490	PFAM nuclease (SNase	NA
UHGV-1371944_10	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-1371944_11	KOfam	K14059	int; integrase	NA
UHGV-1371944_11	PHROG	phrog_1	integrase	integration and excision
UHGV-1371944_11	UniRef90	UniRef90_A0A174DBH0	Site-specific tyrosine recombinase XerC	NA
UHGV-1371944_11	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-1371944_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1371944_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1371944_11	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1371944_12	Structural annotation	PF12510	NA	NA
UHGV-1371944_13	PHROG	phrog_20016	NA	unknown function
UHGV-1371944_13	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1371944_13	eggNOG-mapper	1485543.JMME01000025_gene2458	NA	NA
UHGV-1371944_13	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1371944_14	PHROG	phrog_16490	NA	unknown function
UHGV-1371944_14	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-1371944_16	PHROG	phrog_22984	NA	unknown function
UHGV-1371944_17	PHROG	phrog_21718	NA	unknown function
UHGV-1371944_17	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1371944_18	PHROG	phrog_3754	NA	unknown function
UHGV-1371944_18	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1371944_20	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-1371944_20	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-1371944_21	UniRef90	UniRef90_U2AS96	MuF_C domain-containing protein	NA
UHGV-1371944_21	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-1371944_22	eggNOG-mapper	1226322.HMPREF1545_00786	NA	NA
UHGV-1371944_23	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1371944_23	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-1371944_23	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1371944_25	PHROG	phrog_7121	tail fiber protein	tail
UHGV-1371944_25	UniRef90	UniRef90_UPI00195E70AD	tail fiber domain-containing protein	NA
UHGV-1371944_25	eggNOG-mapper	1235793.C809_04661	NA	NA
UHGV-1371944_25	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1371944_25	Structural annotation	PF07902, NF041249	NA	NA
UHGV-1371944_26	PHROG	phrog_4105	NA	unknown function
UHGV-1371944_26	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-1371944_27	PHROG	phrog_1129	holin	lysis
UHGV-1371944_27	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-1371944_27	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1371944_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1371944_27	Structural annotation	PF06946	NA	NA
UHGV-1371944_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1371944_28	PHROG	phrog_18955	NA	unknown function
UHGV-1371944_28	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-1371944_28	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-1371944_28	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-1371944_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1371944_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1371944_28	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-1371944_29	eggNOG-mapper	742738.HMPREF9460_03967	NA	NA
UHGV-1371944_31	PHROG	phrog_2310	NA	unknown function
UHGV-1371944_32	PHROG	phrog_24451	NA	unknown function
UHGV-1371944_32	eggNOG-mapper	2754.EH55_13280	NA	NA
UHGV-1371944_34	PHROG	phrog_12105	NA	unknown function
UHGV-1371944_34	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1371944_35	PHROG	phrog_371	major head protein	head and packaging
UHGV-1371944_35	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-1371944_35	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-1371944_35	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1371944_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1371944_36	PHROG	phrog_24113	NA	unknown function
UHGV-1371944_36	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-1371944_36	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1371944_37	PHROG	phrog_35275	NA	unknown function
UHGV-1371944_37	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-1371944_39	PHROG	phrog_156	portal protein	head and packaging
UHGV-1371944_39	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-1371944_39	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1371944_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1371944_42	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1371944_42	UniRef90	UniRef90_UPI001105ADB4	PBSX family phage terminase large subunit	NA
UHGV-1371944_42	eggNOG-mapper	1226322.HMPREF1545_03843	phage Terminase large subunit	NA
UHGV-1371944_42	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1371944_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1371944_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-1371944_42	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1371944_43	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1371944_43	UniRef90	UniRef90_UPI001D01EB7C	helix-turn-helix domain-containing protein	NA
UHGV-1371944_43	eggNOG-mapper	1408437.JNJN01000045_gene597	HNH endonuclease	NA
UHGV-1371944_43	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1371944_43	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1371944_43	Structural annotation	PF07141	NA	NA
UHGV-1371944_46	PHROG	phrog_98	NA	unknown function
UHGV-1371944_46	UniRef90	UniRef90_UPI001D00D0A2	YopX family protein	NA
UHGV-1371944_46	eggNOG-mapper	1095737.HMPREF1110_1215	YopX protein	NA
UHGV-1371944_46	Pfam	PF09643	YopX protein	YopX
UHGV-1371944_49	PHROG	phrog_38832	NA	unknown function
UHGV-1371944_51	Structural annotation	NF000937	NA	NA
UHGV-1371944_52	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-1371944_52	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-1371944_53	UniRef90	UniRef90_UPI0012AC12CD	Lar family restriction alleviation protein	NA
UHGV-1371944_53	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-1371944_53	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1371944_56	PHROG	phrog_824	NA	unknown function
UHGV-1371944_56	UniRef90	UniRef90_A0A096B719	VRR-NUC domain-containing protein	NA
UHGV-1371944_56	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-1371944_56	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1371944_56	Structural annotation	PF08774	NA	NA
UHGV-1371944_57	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1371944_57	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1371944_57	UniRef90	UniRef90_UPI00164D082B	DEAD/DEAH box helicase	NA
UHGV-1371944_57	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-1371944_57	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1371944_57	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1371944_57	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1371944_57	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1371944_57	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1371944_58	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1371944_58	UniRef90	UniRef90_A0A173Y540	Superfamily II helicase and inactivated derivatives	NA
UHGV-1371944_58	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-1371944_58	Pfam	PF06048	NA	DUF927
UHGV-1371944_58	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1371944_58	COG	COG5519	NA	NA
UHGV-1371944_58	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1371944_59	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1371944_59	PHROG	phrog_11992	NA	unknown function
UHGV-1371944_59	UniRef90	UniRef90_A0A096B603	ZnF_CHCC domain-containing protein	NA
UHGV-1371944_59	eggNOG-mapper	742738.HMPREF9460_02494	CHC2 zinc finger	NA
UHGV-1371944_59	PADLOC	drt-cluster192	DRT	DRT
UHGV-1371944_59	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1371944_59	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1371944_59	Structural annotation	PF01807	NA	NA
UHGV-1371944_60	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1371944_60	UniRef90	UniRef90_UPI00164E5A62	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1371944_60	eggNOG-mapper	1007096.BAGW01000023_gene152	NA	NA
UHGV-1371944_60	Pfam	PF12684	NA	DUF3799
UHGV-1371944_60	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1371944_60	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1371944_61	PHROG	phrog_21613	NA	unknown function
UHGV-1371944_61	eggNOG-mapper	1007096.BAGW01000023_gene153	NA	NA
UHGV-1371944_63	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1371944_63	PHROG	phrog_1499	NA	unknown function
UHGV-1371944_63	UniRef90	UniRef90_UPI0011819106	AAA family ATPase	NA
UHGV-1371944_63	eggNOG-mapper	1007096.BAGW01000023_gene155	DNA recombination	NA
UHGV-1371944_63	Pfam	PF13476	AAA domain	AAA_23
UHGV-1371944_63	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1371944_63	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1371944	Yes	44,815 bps	57.91%	100.00%	0.9800
UHGV-0149242	No	44,815 bps	57.91%	100.00%	0.9786
UHGV-1624243	No	12,458 bps	59.50%	28.36%	0.9832