vOTU-005433

Overview

vOTU representative UHGV-2119602

No. of genomes 13

Genome length 46,439 bps

Completeness 100.00% (complete)

Host CAG-83 sp000435975

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-005433
Number of genomes	13
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-00227 › vGENUS-00348 › vSUBGEN-40240 › vOTU-005433
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › CAG-83 › CAG-83 sp000435975
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2119602
BioSample	SAMEA3708851
Genome length	46,439 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	69
CDS density	91.53%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2119602_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2119602_5	PHROG	phrog_435	endolysin	lysis
UHGV-2119602_5	UniRef90	UniRef90_UPI001BF1661D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2119602_5	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2119602_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2119602_5	Pfam	PF05036	SPOR domain	SPOR
UHGV-2119602_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2119602_5	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-2119602_6	PHROG	phrog_199	holin	lysis
UHGV-2119602_6	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-2119602_6	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2119602_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2119602_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2119602_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2119602_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2119602_7	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-2119602_7	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-2119602_7	eggNOG-mapper	794903.OPIT5_20595	protein tyrosine phosphatase activity	NA
UHGV-2119602_7	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-2119602_7	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-2119602_7	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA
UHGV-2119602_9	PHROG	phrog_30034	NA	unknown function
UHGV-2119602_9	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-2119602_9	eggNOG-mapper	478749.BRYFOR_07638	NA	NA
UHGV-2119602_9	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2119602_10	Structural annotation	PF10651	NA	NA
UHGV-2119602_11	PHROG	phrog_372	tail protein	tail
UHGV-2119602_11	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-2119602_11	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-2119602_11	Pfam	PF05895	NA	DUF859
UHGV-2119602_11	COG	COG4675	Phage tail collar domain	NA
UHGV-2119602_11	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-2119602_12	PHROG	phrog_6616	tail protein	tail
UHGV-2119602_12	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-2119602_12	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2119602_13	PHROG	phrog_1194	NA	unknown function
UHGV-2119602_13	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-2119602_13	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-2119602_13	Pfam	PF20458	NA	DUF6711
UHGV-2119602_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2119602_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2119602_14	UniRef90	UniRef90_A0A1I1XW41	Phage-related protein	NA
UHGV-2119602_14	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-2119602_14	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2119602_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2119602_15	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-2119602_16	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-2119602_16	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-2119602_16	Pfam	PF16478	NA	DUF5055
UHGV-2119602_16	Structural annotation	PF16478	NA	NA
UHGV-2119602_17	PHROG	phrog_158	major tail protein	tail
UHGV-2119602_17	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-2119602_17	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-2119602_17	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-2119602_17	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2119602_18	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-2119602_19	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-2119602_20	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-2119602_21	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-2119602_21	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-2119602_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2119602_21	Structural annotation	TIGR01560	NA	NA
UHGV-2119602_22	PHROG	phrog_1328	major head protein	head and packaging
UHGV-2119602_22	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-2119602_22	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-2119602_22	Pfam	PF17236	NA	DUF5309
UHGV-2119602_22	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-2119602_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-2119602_24	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-2119602_24	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2119602_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2119602_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2119602_25	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2119602_25	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-2119602_25	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-2119602_25	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2119602_25	COG	COG5410	NA	NA
UHGV-2119602_25	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2119602_26	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-2119602_27	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2119602_27	PHROG	phrog_95	integrase	integration and excision
UHGV-2119602_27	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-2119602_27	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-2119602_27	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2119602_27	Pfam	PF07508	Recombinase	Recombinase
UHGV-2119602_27	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2119602_27	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2119602_32	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2119602_32	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-2119602_33	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-2119602_33	Structural annotation	TIGR01636	NA	NA
UHGV-2119602_36	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-2119602_38	PHROG	phrog_38832	NA	unknown function
UHGV-2119602_38	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-2119602_38	Structural annotation	PF10781	NA	NA
UHGV-2119602_41	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-2119602_41	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2119602_41	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2119602_41	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2119602_42	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-2119602_42	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2119602_42	UniRef90	UniRef90_A0A1Q6JM75	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2119602_42	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2119602_42	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2119602_42	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2119602_42	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2119602_42	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-2119602_43	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2119602_43	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2119602_43	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-2119602_43	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-2119602_43	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2119602_43	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2119602_43	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2119602_43	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2119602_43	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-2119602_45	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2119602_45	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2119602_45	UniRef90	UniRef90_A0A2T0APF7	Endodeoxyribonuclease RusA	NA
UHGV-2119602_45	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-2119602_45	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2119602_45	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2119602_45	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2119602_46	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2119602_46	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2119602_46	UniRef90	UniRef90_A0A3D1XEC3	DNA helicase	NA
UHGV-2119602_46	eggNOG-mapper	1408437.JNJN01000010_gene1232	Participates in initiation and elongation during chromosome replication	NA
UHGV-2119602_46	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2119602_46	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2119602_46	COG	COG0305	Replicative DNA helicase	NA
UHGV-2119602_46	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2119602_47	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2119602_47	UniRef90	UniRef90_UPI000F093508	phage replication protein	NA
UHGV-2119602_47	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-2119602_47	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-2119602_48	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2119602_48	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2119602_48	UniRef90	UniRef90_UPI001BB47F69	single-stranded DNA-binding protein	NA
UHGV-2119602_48	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-2119602_48	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2119602_48	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2119602_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2119602_48	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2119602_48	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2119602_49	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2119602_50	PHROG	phrog_7566	NA	unknown function
UHGV-2119602_50	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-2119602_50	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-2119602_51	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2119602_51	eggNOG-mapper	478749.BRYFOR_06178	AP2 domain protein	NA
UHGV-2119602_51	Structural annotation	PF17375	NA	NA
UHGV-2119602_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2119602_52	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2119602_52	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2119602_52	Structural annotation	PF05772	NA	NA
UHGV-2119602_53	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2119602_53	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-2119602_53	eggNOG-mapper	1238184.CM001792_gene2549	NA	NA
UHGV-2119602_53	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2119602_53	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2119602_54	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-2119602_54	eggNOG-mapper	445972.ANACOL_01823	NA	NA
UHGV-2119602_54	Pfam	PF06378	NA	DUF1071
UHGV-2119602_54	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-2119602_59	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-2119602_59	PHROG	phrog_4433	NA	unknown function
UHGV-2119602_59	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-2119602_59	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2119602_59	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2119602_59	Structural annotation	NF007410	NA	NA
UHGV-2119602_60	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-2119602_61	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2119602_61	UniRef90	UniRef90_A0A3D3Y6C1	XRE family transcriptional regulator	NA
UHGV-2119602_61	eggNOG-mapper	796942.HMPREF9623_00878	NA	NA
UHGV-2119602_61	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2119602_61	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2119602_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2119602_62	UniRef90	UniRef90_A0A1C6ALC6	Helix-turn-helix	NA
UHGV-2119602_62	eggNOG-mapper	663278.Ethha_2377	sequence-specific DNA binding	NA
UHGV-2119602_62	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2119602_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2119602_62	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-2119602_63	Structural annotation	COG1321	NA	NA
UHGV-2119602_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2119602_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2119602_65	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-2119602_66	KOfam	K14059	int; integrase	NA
UHGV-2119602_66	PHROG	phrog_1	integrase	integration and excision
UHGV-2119602_66	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-2119602_66	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-2119602_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2119602_66	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2119602_66	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2119602_67	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-2119602_68	Structural annotation	PF18573, NF033147	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2119602	Yes	46,439 bps	54.81%	100.00%	0.9824
UHGV-1362539	No	46,303 bps	54.75%	100.00%	0.9820
UHGV-0109643	No	47,950 bps	54.77%	99.90%	0.9821
UHGV-0191488	No	46,435 bps	54.81%	99.90%	0.9824
UHGV-1332306	No	46,235 bps	54.69%	99.90%	0.9819
UHGV-1464589	No	41,440 bps	55.02%	92.03%	0.9825
UHGV-1544775	No	35,597 bps	55.18%	79.07%	0.9825
UHGV-0076497	No	31,940 bps	55.05%	70.68%	0.9815
UHGV-1477532	No	31,940 bps	55.05%	70.68%	0.9815
UHGV-0130456	No	23,506 bps	55.15%	52.04%	0.9825
UHGV-1730160	No	14,855 bps	53.38%	34.59%	0.9820
UHGV-0106835	No	13,637 bps	55.55%	30.24%	0.9815
UHGV-1679754	No	12,692 bps	53.09%	29.45%	0.9819