vOTU-005573

Overview

vOTU representative UHGV-1900474

No. of genomes 7

Genome length 42,077 bps

Completeness 100.00% (complete)

Host Roseburia inulinivorans

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-005573
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00010 › vSUBFAM-00152 › vGENUS-00084 › vSUBGEN-34635 › vOTU-005573
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Roseburia › Roseburia inulinivorans
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1900474
BioSample	NA
Genome length	42,077 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	76
CDS density	93.07%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1900474_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-1900474_3	UniRef90	UniRef90_A0A3R5WTT1	Phage capsid protein	NA
UHGV-1900474_3	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-1900474_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1900474_5	PHROG	phrog_1233	NA	unknown function
UHGV-1900474_5	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-1900474_5	Structural annotation	PF13058	NA	NA
UHGV-1900474_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1900474_6	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1900474_6	UniRef90	UniRef90_A0A3R5WSV0	Terminase_3 domain-containing protein	NA
UHGV-1900474_6	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1900474_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1900474_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1900474_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-1900474_6	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1900474_7	PHROG	phrog_33130	NA	unknown function
UHGV-1900474_7	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-1900474_7	Structural annotation	PF10922	NA	NA
UHGV-1900474_8	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1900474_8	UniRef90	UniRef90_A0A4Q2LHE8	GLYCOSYL_HYDROL_F22_1 domain-containing protein	NA
UHGV-1900474_8	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-1900474_10	UniRef90	UniRef90_A0A3R6F7K5	XRE family transcriptional regulator	NA
UHGV-1900474_10	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1900474_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1900474_10	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-1900474_12	UniRef90	UniRef90_A0A412KFA7	ABC transporter ATP-binding protein	NA
UHGV-1900474_13	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1900474_13	UniRef90	UniRef90_A0A0F0C7S4	LexA repressor	NA
UHGV-1900474_13	eggNOG-mapper	697281.Mahau_0048	LexA DNA binding domain	NA
UHGV-1900474_13	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-1900474_13	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1900474_13	Structural annotation	PF01726, MF_00732, NF006812, COG3388	NA	NA
UHGV-1900474_14	PHROG	phrog_20730	NA	unknown function
UHGV-1900474_14	eggNOG-mapper	1235799.C818_02666	NA	NA
UHGV-1900474_17	UniRef90	UniRef90_UPI001C01D3C5	NA	NA
UHGV-1900474_17	eggNOG-mapper	622312.ROSEINA2194_04464	NA	NA
UHGV-1900474_17	Pfam	PF14199	NA	DUF4317
UHGV-1900474_17	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-1900474_18	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1900474_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1900474_18	UniRef90	UniRef90_A0A3A9F7M0	PAPS_reduct domain-containing protein	NA
UHGV-1900474_18	eggNOG-mapper	1235799.C818_02649	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1900474_18	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1900474_18	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1900474_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1900474_18	Structural annotation	PF01507, MF_00063, NF002537	NA	NA
UHGV-1900474_21	PHROG	phrog_874	NA	unknown function
UHGV-1900474_21	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-1900474_21	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1900474_23	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1900474_23	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-1900474_23	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-1900474_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1900474_23	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1900474_23	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1900474_24	Structural annotation	PF14282	NA	NA
UHGV-1900474_25	PHROG	phrog_8684	NA	unknown function
UHGV-1900474_25	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-1900474_25	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-1900474_25	Pfam	PF09643	YopX protein	YopX
UHGV-1900474_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1900474_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1900474_27	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-1900474_32	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1900474_32	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1900474_32	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-1900474_32	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-1900474_32	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1900474_32	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1900474_32	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-1900474_33	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1900474_33	eggNOG-mapper	1071400.LBUCD034_0926	DnaD domain protein	NA
UHGV-1900474_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1900474_33	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-1900474_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1900474_34	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1900474_34	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1900474_34	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1900474_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1900474_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1900474_34	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1900474_36	PHROG	phrog_398	NA	unknown function
UHGV-1900474_36	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-1900474_36	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-1900474_36	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1900474_36	Structural annotation	PF16784	NA	NA
UHGV-1900474_37	PHROG	phrog_14970	NA	unknown function
UHGV-1900474_37	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-1900474_37	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-1900474_37	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1900474_37	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1900474_37	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1900474_38	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-1900474_38	PHROG	phrog_5889	NA	unknown function
UHGV-1900474_38	UniRef90	UniRef90_A0A3R5ZBU3	HD family phosphohydrolase	NA
UHGV-1900474_38	eggNOG-mapper	411468.CLOSCI_00316	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-1900474_38	Pfam	PF01966	HD domain	HD
UHGV-1900474_38	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-1900474_38	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-1900474_40	Structural annotation	PF15513, NF007469	NA	NA
UHGV-1900474_41	Structural annotation	PF11127	NA	NA
UHGV-1900474_44	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1900474_44	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1900474_44	UniRef90	UniRef90_A0A3R5Z350	XRE family transcriptional regulator	NA
UHGV-1900474_44	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-1900474_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1900474_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1900474_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1900474_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1900474_46	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-1900474_46	PHROG	phrog_10292	NA	unknown function
UHGV-1900474_46	UniRef90	UniRef90_A0A1Q6KIC5	TM2 domain-containing protein	NA
UHGV-1900474_46	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-1900474_46	Pfam	PF05154	TM2 domain	TM2
UHGV-1900474_46	COG	COG2314	NA	NA
UHGV-1900474_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1900474_47	PHROG	phrog_95	integrase	integration and excision
UHGV-1900474_47	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-1900474_47	eggNOG-mapper	180332.JTGN01000010_gene4488	Resolvase, N terminal domain	NA
UHGV-1900474_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1900474_47	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1900474_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1900474_47	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-1900474_48	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1900474_48	PHROG	phrog_435	endolysin	lysis
UHGV-1900474_48	UniRef90	UniRef90_A0A1Q6KI91	SPOR domain-containing protein	NA
UHGV-1900474_48	eggNOG-mapper	1232447.BAHW02000005_gene156	Cell wall hydrolase autolysin	NA
UHGV-1900474_48	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1900474_48	Pfam	PF05036	SPOR domain	SPOR
UHGV-1900474_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1900474_48	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1900474_49	PHROG	phrog_1129	holin	lysis
UHGV-1900474_49	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-1900474_49	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1900474_49	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1900474_49	Structural annotation	PF06946	NA	NA
UHGV-1900474_50	PHROG	phrog_4105	NA	unknown function
UHGV-1900474_50	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1900474_53	PHROG	phrog_18725	NA	unknown function
UHGV-1900474_53	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-1900474_53	Structural annotation	PF13754, COG2372	NA	NA
UHGV-1900474_54	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-1900474_54	PHROG	phrog_11157	NA	unknown function
UHGV-1900474_54	UniRef90	UniRef90_A0A416HMQ3	Big_13 domain-containing protein	NA
UHGV-1900474_54	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-1900474_54	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1900474_54	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-1900474_54	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1900474_56	PHROG	phrog_13879	NA	unknown function
UHGV-1900474_56	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-1900474_56	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1900474_57	PHROG	phrog_1194	NA	unknown function
UHGV-1900474_57	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-1900474_57	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1900474_58	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1900474_58	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-1900474_58	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1900474_59	PHROG	phrog_706	NA	unknown function
UHGV-1900474_59	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-1900474_59	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-1900474_59	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1900474_59	Structural annotation	PF06854	NA	NA
UHGV-1900474_60	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-1900474_60	Structural annotation	PF10666	NA	NA
UHGV-1900474_61	PHROG	phrog_3099	NA	unknown function
UHGV-1900474_61	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-1900474_61	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1900474_62	Structural annotation	PF12691	NA	NA
UHGV-1900474_63	PHROG	phrog_3366	NA	unknown function
UHGV-1900474_63	eggNOG-mapper	1235790.C805_00078	NA	NA
UHGV-1900474_63	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1900474_64	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1900474_64	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-1900474_65	PHROG	phrog_544	major head protein	head and packaging
UHGV-1900474_65	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-1900474_65	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1900474_65	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1900474_66	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1900474_66	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-1900474_66	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-1900474_66	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1900474_68	PHROG	phrog_1233	NA	unknown function
UHGV-1900474_68	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-1900474_68	Structural annotation	PF20352, COG2856	NA	NA
UHGV-1900474_69	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-1900474_70	PHROG	phrog_20016	NA	unknown function
UHGV-1900474_70	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1900474_70	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1900474_70	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1900474_71	PHROG	phrog_16490	NA	unknown function
UHGV-1900474_71	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1900474_72	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-1900474_73	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-1900474_74	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-1900474_74	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-1900474_75	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1900474_75	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-1900474_75	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-1900474_75	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1900474_75	COG	COG2369	NA	NA
UHGV-1900474_75	Structural annotation	PF06152	NA	NA
UHGV-1900474_76	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1900474_76	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-1900474_76	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1900474_76	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1900474_76	Structural annotation	PF11114	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1900474	Yes	42,077 bps	39.14%	100.00%	0.9793
UHGV-1352589	No	41,667 bps	38.90%	100.00%	0.9806
UHGV-0089764	No	42,152 bps	38.89%	99.90%	0.9749
UHGV-0232945	No	31,533 bps	38.56%	74.82%	0.9815
UHGV-0224785	No	29,322 bps	38.31%	69.57%	0.9808
UHGV-1488351	No	27,911 bps	38.48%	66.22%	0.9809
UHGV-1377445	No	23,385 bps	37.89%	55.48%	0.9809