vOTU-005625

Overview

vOTU representative UHGV-0020706

No. of genomes 3

Genome length 56,091 bps

Completeness 100.00% (complete)

Host Lachnospira sp000437735

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-005625
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 › vSUBFAM-05785 › vGENUS-13335 › vSUBGEN-21326 › vOTU-005625
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Lachnospira › Lachnospira sp000437735
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0020706
BioSample	SAMEA4765626
Genome length	56,091 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	90
CDS density	87.45%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020706_1	UniRef90	UniRef90_UPI00189E384C	four helix bundle protein	NA
UHGV-0020706_1	eggNOG-mapper	397291.C804_00978	NA	NA
UHGV-0020706_1	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0020706_2	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0020706_2	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0020706_2	UniRef90	UniRef90_A0A3R6US98	Reverse transcriptase domain-containing protein	NA
UHGV-0020706_2	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0020706_2	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0020706_2	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0020706_2	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0020706_7	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0020706_7	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-0020706_7	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0020706_7	COG	COG5410	NA	NA
UHGV-0020706_7	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0020706_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0020706_8	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0020706_8	Structural annotation	PF02996	NA	NA
UHGV-0020706_9	KOfam	K15529	POA1; ADP-ribose 1''-phosphate phosphatase [EC:3.1.3.84]	NA
UHGV-0020706_9	PHROG	phrog_335	phosphatase	other
UHGV-0020706_9	UniRef90	UniRef90_A0A374LF98	Appr-1-p processing protein	NA
UHGV-0020706_9	eggNOG-mapper	315750.BPUM_1656	Macro domain	NA
UHGV-0020706_9	PADLOC	darG	NA	NA
UHGV-0020706_9	Pfam	PF01661	Macro domain	Macro
UHGV-0020706_9	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-0020706_9	Structural annotation	PF05028, MF_01205, NF001666, COG2110	NA	NA
UHGV-0020706_10	Structural annotation	PF10122, NF041070, COG4416	NA	NA
UHGV-0020706_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-0020706_11	UniRef90	UniRef90_R6CA99	SPP1 family phage portal protein	NA
UHGV-0020706_11	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0020706_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0020706_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0020706_12	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0020706_12	eggNOG-mapper	1121451.DESAM_10288	head morphogenesis protein, SPP1 gp7	NA
UHGV-0020706_12	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0020706_12	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0020706_12	COG	COG2369	NA	NA
UHGV-0020706_12	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0020706_14	PHROG	phrog_909	major head protein	head and packaging
UHGV-0020706_14	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0020706_14	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0020706_14	Structural annotation	PF02924	NA	NA
UHGV-0020706_15	PHROG	phrog_29	major head protein	head and packaging
UHGV-0020706_15	UniRef90	UniRef90_A0A2K9P3U0	Phage major capsid protein E	NA
UHGV-0020706_15	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0020706_15	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0020706_15	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0020706_18	PHROG	phrog_1863	NA	unknown function
UHGV-0020706_18	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0020706_19	PHROG	phrog_443	holin	lysis
UHGV-0020706_19	UniRef90	UniRef90_A0A1M6RHE6	Holin, r1t family	NA
UHGV-0020706_19	eggNOG-mapper	469596.HMPREF9488_02591	Putative lactococcus lactis phage r1t holin	NA
UHGV-0020706_19	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0020706_19	Structural annotation	PF16945	NA	NA
UHGV-0020706_20	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0020706_20	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0020706_21	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0020706_22	Structural annotation	PF05657	NA	NA
UHGV-0020706_23	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0020706_23	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0020706_26	PHROG	phrog_28918	NA	unknown function
UHGV-0020706_26	UniRef90	UniRef90_UPI001D06F8E3	methyl-accepting chemotaxis protein	NA
UHGV-0020706_26	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0020706_26	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0020706_27	PHROG	phrog_1194	NA	unknown function
UHGV-0020706_27	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0020706_27	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0020706_28	PHROG	phrog_6616	tail protein	tail
UHGV-0020706_28	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-0020706_28	COG	COG4926	Phage-related protein	NA
UHGV-0020706_30	UniRef90	UniRef90_UPI001D068B5A	C40 family peptidase	NA
UHGV-0020706_30	eggNOG-mapper	411902.CLOBOL_05642	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0020706_30	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0020706_30	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0020706_31	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0020706_31	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0020706_31	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0020706_31	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0020706_32	UniRef90	UniRef90_A0A1Q6KSP3	HTH cro/C1-type domain-containing protein	NA
UHGV-0020706_32	eggNOG-mapper	742765.HMPREF9457_02739	NA	NA
UHGV-0020706_32	Structural annotation	PF12844, PF16452, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0020706_33	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0020706_33	UniRef90	UniRef90_UPI001E2D1F04	helix-turn-helix domain-containing protein	NA
UHGV-0020706_33	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0020706_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020706_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020706_36	Structural annotation	PF14947, NF008122, COG4754	NA	NA
UHGV-0020706_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0020706_37	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0020706_37	UniRef90	UniRef90_A0A3R6Q1Q5	Phage antirepressor protein	NA
UHGV-0020706_37	eggNOG-mapper	1033733.CAEK01000007_gene1684	BRO family, N-terminal domain protein	NA
UHGV-0020706_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0020706_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0020706_37	COG	COG3617	Prophage antirepressor	NA
UHGV-0020706_37	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0020706_40	PHROG	phrog_14105	NA	unknown function
UHGV-0020706_40	UniRef90	UniRef90_UPI0018A0DC22	PPE family protein	NA
UHGV-0020706_40	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-0020706_40	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0020706_40	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0020706_43	UniRef90	UniRef90_A0A417DZU2	NA	NA
UHGV-0020706_43	eggNOG-mapper	457424.BFAG_00720	NA	NA
UHGV-0020706_43	Pfam	PF14190	NA	DUF4313
UHGV-0020706_43	Structural annotation	PF14190	NA	NA
UHGV-0020706_48	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0020706_48	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0020706_48	UniRef90	UniRef90_UPI001B199585	recombinase RecT	NA
UHGV-0020706_48	eggNOG-mapper	431943.CKL_0416	RecT family	NA
UHGV-0020706_48	Pfam	PF03837	RecT family	RecT
UHGV-0020706_48	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0020706_48	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0020706_49	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020706_49	UniRef90	UniRef90_UPI001EE8242C	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0020706_49	eggNOG-mapper	861454.HMPREF9099_00347	NA	NA
UHGV-0020706_49	Pfam	PF12684	NA	DUF3799
UHGV-0020706_49	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0020706_49	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0020706_50	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0020706_50	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0020706_50	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0020706_52	PHROG	phrog_1163	NA	unknown function
UHGV-0020706_52	UniRef90	UniRef90_A0A443IMB0	Replication protein	NA
UHGV-0020706_52	eggNOG-mapper	372457.A7DYC7_9CAUD	calcium ion binding	NA
UHGV-0020706_52	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0020706_52	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0020706_52	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0020706_53	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0020706_53	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0020706_54	Structural annotation	PF17399	NA	NA
UHGV-0020706_55	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0020706_55	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0020706_55	UniRef90	UniRef90_UPI001EDCEC57	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0020706_55	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0020706_55	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0020706_55	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0020706_55	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0020706_55	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0020706_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020706_58	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0020706_58	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0020706_58	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0020706_58	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0020706_59	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0020706_59	UniRef90	UniRef90_A0A6M3LEH2	Putative methyltransferase	NA
UHGV-0020706_59	eggNOG-mapper	1392540.P256_00041	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0020706_59	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0020706_60	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0020706_60	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0020706_60	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0020706_60	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0020706_60	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0020706_60	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0020706_60	COG	COG0863	DNA modification methylase	NA
UHGV-0020706_60	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0020706_61	Structural annotation	PF13443, NF040507, COG1476	NA	NA
UHGV-0020706_62	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0020706_62	Structural annotation	PF18300, NF033216, COG4568	NA	NA
UHGV-0020706_63	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0020706_63	UniRef90	UniRef90_A0A6L6XJP0	Radical SAM protein	NA
UHGV-0020706_63	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0020706_63	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0020706_63	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0020706_65	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0020706_65	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0020706_65	UniRef90	UniRef90_UPI001897F4FC	AAA family ATPase	NA
UHGV-0020706_65	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0020706_65	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0020706_65	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0020706_65	COG	COG0305	Replicative DNA helicase	NA
UHGV-0020706_65	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0020706_69	Structural annotation	PF16509, NF001066	NA	NA
UHGV-0020706_70	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0020706_70	PHROG	phrog_95	integrase	integration and excision
UHGV-0020706_70	UniRef90	UniRef90_A0A354HDW7	Recombinase family protein	NA
UHGV-0020706_70	eggNOG-mapper	1384065.JAGS01000001_gene1134	NA	NA
UHGV-0020706_70	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0020706_70	Pfam	PF07508	Recombinase	Recombinase
UHGV-0020706_70	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0020706_70	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0020706_70	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0020706_72	PHROG	phrog_21718	NA	unknown function
UHGV-0020706_72	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0020706_72	Structural annotation	NF033819	NA	NA
UHGV-0020706_74	PHROG	phrog_16490	NA	unknown function
UHGV-0020706_74	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0020706_76	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0020706_77	PHROG	phrog_1233	NA	unknown function
UHGV-0020706_77	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-0020706_77	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0020706_78	PHROG	phrog_24502	zinc-finger domain protein	other
UHGV-0020706_79	UniRef90	UniRef90_A0A3E4LX24	XRE family transcriptional regulator	NA
UHGV-0020706_81	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0020706_81	UniRef90	UniRef90_UPI00093179C4	helix-turn-helix transcriptional regulator	NA
UHGV-0020706_81	eggNOG-mapper	411490.ANACAC_00697	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0020706_81	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0020706_81	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0020706_84	Structural annotation	PF09392, NF011854	NA	NA
UHGV-0020706_88	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0020706_88	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0020706_88	UniRef90	UniRef90_A0A7X2N4W4	Single-stranded DNA-binding protein	NA
UHGV-0020706_88	eggNOG-mapper	679200.HMPREF9333_00481	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0020706_88	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0020706_88	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0020706_88	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0020706_88	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0020706_88	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0020706_89	PHROG	phrog_918	NA	unknown function
UHGV-0020706_89	UniRef90	UniRef90_UPI001D092FF5	NA	NA
UHGV-0020706_89	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0020706_89	Pfam	PF19791	NA	DUF6275
UHGV-0020706_90	PHROG	phrog_38044	NA	unknown function
UHGV-0020706_90	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0020706_90	Pfam	PF19789	NA	DUF6273
UHGV-0020706_90	COG	COG4733	Phage-related protein, tail protein J	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0020706	Yes	56,091 bps	43.66%	100.00%	0.9743
UHGV-0019692	No	56,091 bps	43.66%	100.00%	0.9742
UHGV-0033297	No	56,242 bps	43.64%	91.75%	0.9762