vOTU-006151

Overview

vOTU representative UHGV-0019665

No. of genomes 6

Genome length 36,838 bps

Completeness 100.00% (complete)

Host Ruminococcus sp900540005

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-006151
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00026 › vSUBFAM-01646 › vGENUS-06579 › vSUBGEN-40674 › vOTU-006151
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminococcus › Ruminococcus sp900540005
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019665
BioSample	SAMEA4765562
Genome length	36,838 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	57
CDS density	92.81%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019665_1	KOfam	K14059	int; integrase	NA
UHGV-0019665_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0019665_1	UniRef90	UniRef90_A0A352DNS6	Site-specific integrase	NA
UHGV-0019665_1	eggNOG-mapper	641112.ACOK01000103_gene518	Phage integrase family	NA
UHGV-0019665_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0019665_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0019665_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0019665_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0019665_3	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0019665_3	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0019665_3	UniRef90	UniRef90_UPI001B3C6673	3'-5' exonuclease	NA
UHGV-0019665_3	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-0019665_3	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0019665_3	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0019665_3	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0019665_3	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0019665_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0019665_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0019665_4	UniRef90	UniRef90_E9SCJ6	Peptidase S24-like protein	NA
UHGV-0019665_4	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-0019665_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0019665_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0019665_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0019665_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0019665_5	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0019665_5	UniRef90	UniRef90_R6R5I8	HTH cro/C1-type domain-containing protein	NA
UHGV-0019665_5	eggNOG-mapper	1033744.CAEL01000029_gene1308	NA	NA
UHGV-0019665_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019665_5	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0019665_14	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0019665_14	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0019665_14	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0019665_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0019665_14	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0019665_15	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0019665_15	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0019665_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0019665_15	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0019665_16	PHROG	phrog_21613	NA	unknown function
UHGV-0019665_16	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0019665_17	PHROG	phrog_1499	NA	unknown function
UHGV-0019665_17	UniRef90	UniRef90_A0A315Y1S7	Exonuclease SbcC	NA
UHGV-0019665_17	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0019665_17	Pfam	PF13476	AAA domain	AAA_23
UHGV-0019665_17	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0019665_17	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0019665_18	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019665_18	UniRef90	UniRef90_A0A352DNR3	NA	NA
UHGV-0019665_18	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0019665_18	Pfam	PF12684	NA	DUF3799
UHGV-0019665_18	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0019665_18	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0019665_19	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0019665_19	UniRef90	UniRef90_A0A352DNR2	ERCC4 domain-containing protein	NA
UHGV-0019665_19	eggNOG-mapper	373903.Hore_03490	ERCC4 domain	NA
UHGV-0019665_19	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0019665_19	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0019665_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0019665_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0019665_21	UniRef90	UniRef90_A0A1H7FVY1	Single-stranded DNA-binding protein	NA
UHGV-0019665_21	eggNOG-mapper	641112.ACOK01000080_gene3234	Single-stranded DNA-binding protein	NA
UHGV-0019665_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0019665_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0019665_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0019665_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0019665_21	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0019665_22	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0019665_22	UniRef90	UniRef90_UPI00085BD5C4	NA	NA
UHGV-0019665_22	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0019665_22	Pfam	PF19808	NA	DUF6291
UHGV-0019665_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0019665_22	Structural annotation	PF19808	NA	NA
UHGV-0019665_28	UniRef90	UniRef90_UPI001D08B1AD	Lar family restriction alleviation protein	NA
UHGV-0019665_29	PHROG	phrog_22543	NA	unknown function
UHGV-0019665_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0019665_32	UniRef90	UniRef90_UPI0005D1DECF	NA	NA
UHGV-0019665_32	eggNOG-mapper	1410624.JNKK01000017_gene1964	sigma factor activity	NA
UHGV-0019665_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0019665_32	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0019665_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0019665_33	UniRef90	UniRef90_UPI000C75D643	phage terminase small subunit P27 family	NA
UHGV-0019665_33	eggNOG-mapper	536233.CLO_1359	phage terminase small subunit	NA
UHGV-0019665_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0019665_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0019665_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0019665_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0019665_34	UniRef90	UniRef90_A0A352DNQ0	Terminase	NA
UHGV-0019665_34	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0019665_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0019665_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0019665_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0019665_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0019665_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0019665_35	UniRef90	UniRef90_A0A315Y4J8	HK97 family phage portal protein	NA
UHGV-0019665_35	eggNOG-mapper	1304866.K413DRAFT_1223	Phage portal protein, HK97 family	NA
UHGV-0019665_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0019665_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0019665_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0019665_37	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0019665_37	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0019665_37	UniRef90	UniRef90_A0A416D4J0	N6_Mtase domain-containing protein	NA
UHGV-0019665_37	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0019665_37	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0019665_37	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0019665_37	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0019665_37	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0019665_38	KOfam	K06904	NA	NA
UHGV-0019665_38	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0019665_38	UniRef90	UniRef90_A0A315Y107	HK97 family phage prohead protease	NA
UHGV-0019665_38	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-0019665_38	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0019665_38	COG	COG3740	Phage head maturation protease	NA
UHGV-0019665_38	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0019665_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0019665_39	UniRef90	UniRef90_UPI0009511B79	phage major capsid protein	NA
UHGV-0019665_39	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0019665_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0019665_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0019665_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0019665_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0019665_40	UniRef90	UniRef90_A0A352DNU5	Phage gp6-like head-tail connector protein	NA
UHGV-0019665_40	eggNOG-mapper	536233.CLO_1364	Phage gp6-like head-tail connector protein	NA
UHGV-0019665_40	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0019665_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0019665_41	PHROG	phrog_25	head closure Hc1	connector
UHGV-0019665_41	UniRef90	UniRef90_A0A315Y1I6	SPP1 family predicted phage head-tail adaptor	NA
UHGV-0019665_41	eggNOG-mapper	1235799.C818_00437	Phage head-tail joining protein	NA
UHGV-0019665_41	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0019665_41	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0019665_41	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0019665_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0019665_42	UniRef90	UniRef90_UPI001CFE163F	HK97 gp10 family phage protein	NA
UHGV-0019665_42	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0019665_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0019665_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0019665_43	eggNOG-mapper	638301.HMPREF0444_1501	NA	NA
UHGV-0019665_43	Structural annotation	PF20765	NA	NA
UHGV-0019665_44	UniRef90	UniRef90_A0A3D3FES6	S-l_SbsC_C domain-containing protein	NA
UHGV-0019665_44	eggNOG-mapper	588581.Cpap_1267	NA	NA
UHGV-0019665_44	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0019665_45	eggNOG-mapper	665956.HMPREF1032_00110	NA	NA
UHGV-0019665_46	eggNOG-mapper	86416.Clopa_0348	NA	NA
UHGV-0019665_47	PHROG	phrog_19074	NA	unknown function
UHGV-0019665_47	UniRef90	UniRef90_A0A352DNT9	Phage tail tape measure protein	NA
UHGV-0019665_47	eggNOG-mapper	1118059.CAHC01000003_gene808	Phage tail tape measure protein, TP901 family	NA
UHGV-0019665_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0019665_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0019665_47	COG	COG5283	Phage-related tail protein	NA
UHGV-0019665_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0019665_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0019665_48	UniRef90	UniRef90_A0A110A7B6	Phage tail protein	NA
UHGV-0019665_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0019665_50	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0019665_50	UniRef90	UniRef90_A0A352DNT6	Prophage_tailD1 domain-containing protein	NA
UHGV-0019665_50	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-0019665_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0019665_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0019665_50	COG	COG4926	Phage-related protein	NA
UHGV-0019665_52	UniRef90	UniRef90_UPI0002E39164	phage holin family protein	NA
UHGV-0019665_52	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0019665_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0019665_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0019665_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0019665_53	PHROG	phrog_21498	NA	unknown function
UHGV-0019665_53	UniRef90	UniRef90_R6E8L3	ParB-like nuclease	NA
UHGV-0019665_53	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0019665_53	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0019665_53	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0019665_54	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0019665_54	PHROG	phrog_894	endolysin	lysis
UHGV-0019665_54	UniRef90	UniRef90_R7GQH8	Peptidase M15	NA
UHGV-0019665_54	eggNOG-mapper	641112.ACOK01000068_gene2796	hydrolase, family 25	NA
UHGV-0019665_54	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0019665_54	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0019665_54	COG	COG3108	NA	NA
UHGV-0019665_54	Structural annotation	PF05951, PF01471, COG3108, COG3409	NA	NA
UHGV-0019665_55	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0019665_56	PHROG	phrog_25567	NA	unknown function
UHGV-0019665_56	UniRef90	UniRef90_E6UJK8	HTH cro/C1-type domain-containing protein	NA
UHGV-0019665_56	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-0019665_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019665_56	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0019665_56	Structural annotation	PF15731, NF007481, COG2944	NA	NA
UHGV-0019665_57	COG	COG0474	Magnesium-transporting ATPase (P-type)	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0019665	Yes	36,838 bps	43.27%	100.00%	0.9746
UHGV-0018677	No	36,233 bps	43.18%	100.00%	0.9753
UHGV-0002473	No	38,441 bps	43.14%	99.90%	0.9756
UHGV-0008663	No	36,840 bps	43.28%	99.39%	0.9749
UHGV-0019273	No	22,151 bps	44.75%	58.21%	0.9749
UHGV-0122437	No	13,600 bps	46.06%	35.74%	0.9811