vOTU-007961

Overview

No. of genomes 18

Genome length 42,228 bps

Completeness 98.14% (high-quality)

Host Succinivibrio sp000431835

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-007961
Number of genomes	18
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00016 › vSUBFAM-00700 › vGENUS-02482 › vSUBGEN-34577 › vOTU-007961
Host taxonomy	Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Succinivibrionaceae › Succinivibrio › Succinivibrio sp000431835
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0002534
BioSample	SAMEA4766259
Genome length	42,228 bps
CheckV completeness	98.14% (high-quality)
CheckV contamination	0.00%
CDS count	59
CDS density	88.80%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0002534_1	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0002534_1	UniRef90	UniRef90_A0A1J6QPE5	Bro-N domain-containing protein	NA
UHGV-0002534_1	eggNOG-mapper	553218.CAMRE0001_2402	Phage antirepressor protein KilAC domain	NA
UHGV-0002534_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0002534_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0002534_1	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0002534_2	UniRef90	UniRef90_A0A3C0CBA0	Ribonucleoside-triphosphate reductase	NA
UHGV-0002534_2	eggNOG-mapper	1410676.JNKL01000005_gene333	CTP reductase activity	NA
UHGV-0002534_2	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0002534_2	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0002534_3	PHROG	phrog_3342	NA	unknown function
UHGV-0002534_3	UniRef90	UniRef90_UPI000E5BF565	pseudouridine synthase	NA
UHGV-0002534_4	Pfam	PF14301	NA	DUF4376
UHGV-0002534_4	Structural annotation	PF14301	NA	NA
UHGV-0002534_5	KOfam	K14059	int; integrase	NA
UHGV-0002534_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0002534_5	UniRef90	UniRef90_A0A662Z764	Phage integrase family protein	NA
UHGV-0002534_5	eggNOG-mapper	742821.HMPREF9464_01814	Belongs to the 'phage' integrase family	NA
UHGV-0002534_5	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0002534_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0002534_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0002534_5	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0002534_7	COG	COG4675	Phage tail collar domain	NA
UHGV-0002534_8	PHROG	phrog_523	tail collar fiber protein	tail
UHGV-0002534_8	UniRef90	UniRef90_A0A5B7ZM63	Tail fiber protein	NA
UHGV-0002534_8	eggNOG-mapper	864702.OsccyDRAFT_0752	tail collar domain protein	NA
UHGV-0002534_8	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0002534_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0002534_8	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0002534_9	PHROG	phrog_203	tail protein	tail
UHGV-0002534_9	UniRef90	UniRef90_A0A1D8JRL0	Phage tail protein	NA
UHGV-0002534_9	eggNOG-mapper	883.DvMF_0750	NA	NA
UHGV-0002534_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0002534_9	COG	COG3778	NA	NA
UHGV-0002534_9	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0002534_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0002534_10	UniRef90	UniRef90_R5ELP9	Baseplate_J domain-containing protein	NA
UHGV-0002534_10	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-0002534_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0002534_10	COG	COG3299	NA	NA
UHGV-0002534_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0002534_11	PHROG	phrog_180	tail protein	tail
UHGV-0002534_11	UniRef90	UniRef90_R5EKZ3	Mu-like prophage protein gp46	NA
UHGV-0002534_11	eggNOG-mapper	570967.JMLV01000018_gene455	Phage protein GP46	NA
UHGV-0002534_11	Pfam	PF07409	NA	GP46
UHGV-0002534_11	COG	COG4381	NA	NA
UHGV-0002534_11	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0002534_13	PHROG	phrog_20516	NA	unknown function
UHGV-0002534_13	UniRef90	UniRef90_R5EZ78	Prophage MuSo2	NA
UHGV-0002534_13	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0002534_13	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0002534_13	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0002534_13	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0002534_13	COG	COG4384	NA	NA
UHGV-0002534_13	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0002534_14	PHROG	phrog_177	tail protein	tail
UHGV-0002534_14	UniRef90	UniRef90_UPI001F13B36D	baseplate protein	NA
UHGV-0002534_14	eggNOG-mapper	1524467.IV04_21445	tail protein	NA
UHGV-0002534_14	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0002534_14	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0002534_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0002534_17	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0002534_17	UniRef90	UniRef90_R5EKZ8	DNA_circ_N domain-containing protein	NA
UHGV-0002534_17	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0002534_17	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0002534_17	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0002534_17	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0002534_18	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0002534_18	UniRef90	UniRef90_A0A5C7NKL0	Phage tail tape measure protein (Fragment)	NA
UHGV-0002534_18	eggNOG-mapper	1122135.KB893169_gene2496	phage tail tape measure protein	NA
UHGV-0002534_18	COG	COG5412	Phage-related protein	NA
UHGV-0002534_18	Structural annotation	TIGR01760	NA	NA
UHGV-0002534_19	eggNOG-mapper	1224136.AMFN01000003_gene3617	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0002534_19	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0002534_20	PHROG	phrog_185	tail tube protein	tail
UHGV-0002534_20	UniRef90	UniRef90_A0A2W4UEZ5	Phage tail protein	NA
UHGV-0002534_20	eggNOG-mapper	343509.SG0718	phage tail	NA
UHGV-0002534_20	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0002534_20	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0002534_21	PHROG	phrog_165	tail sheath	tail
UHGV-0002534_21	UniRef90	UniRef90_R5ELR7	Mu tail sheath family protein	NA
UHGV-0002534_21	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0002534_21	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0002534_21	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0002534_21	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0002534_21	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0002534_22	PHROG	phrog_209	portal protein	head and packaging
UHGV-0002534_22	eggNOG-mapper	279714.FuraDRAFT_0282	NA	NA
UHGV-0002534_22	Structural annotation	PF09646	NA	NA
UHGV-0002534_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-0002534_24	UniRef90	UniRef90_A0A7X2CI04	Phage head closure protein	NA
UHGV-0002534_24	eggNOG-mapper	175950.Q8HAC9_9CAUD	Phage head-tail joining protein	NA
UHGV-0002534_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0002534_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0002534_25	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0002534_25	UniRef90	UniRef90_A0A6L6YIV6	Phage gp6-like head-tail connector protein	NA
UHGV-0002534_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0002534_25	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0002534_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0002534_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0002534_26	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-0002534_26	eggNOG-mapper	1115515.EV102420_11_00180	capsid protein	NA
UHGV-0002534_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0002534_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0002534_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0002534_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0002534_27	KOfam	K06904	NA	NA
UHGV-0002534_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0002534_27	UniRef90	UniRef90_A0A6L6YJ61	HK97 family phage prohead protease	NA
UHGV-0002534_27	eggNOG-mapper	1397284.AYMN01000081_gene2457	Prohead protease	NA
UHGV-0002534_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0002534_27	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0002534_27	COG	COG3740	Phage head maturation protease	NA
UHGV-0002534_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0002534_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0002534_28	UniRef90	UniRef90_A0A3D4G7C4	Phage portal protein	NA
UHGV-0002534_28	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0002534_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0002534_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0002534_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0002534_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0002534_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0002534_29	UniRef90	UniRef90_A0A2S4LXH4	Phage terminase large subunit-like protein	NA
UHGV-0002534_29	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0002534_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0002534_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0002534_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0002534_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0002534_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0002534_30	UniRef90	UniRef90_R5EL15	Putative phage terminase small subunit protein	NA
UHGV-0002534_30	eggNOG-mapper	380358.XALC_2399	Phage terminase, small subunit	NA
UHGV-0002534_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0002534_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0002534_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0002534_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0002534_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0002534_31	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0002534_31	UniRef90	UniRef90_R5EZA4	Restriction endonuclease	NA
UHGV-0002534_31	eggNOG-mapper	1408422.JHYF01000021_gene992	HNH endonuclease	NA
UHGV-0002534_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0002534_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0002534_31	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0002534_34	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0002534_34	PHROG	phrog_7	endolysin	lysis
UHGV-0002534_34	UniRef90	UniRef90_A0A662Z686	Lysozyme	NA
UHGV-0002534_34	eggNOG-mapper	10753.B7SSN6_BPNF	Phage lysozyme	NA
UHGV-0002534_34	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0002534_34	HAMAP	MF_04110	Endolysin	NA
UHGV-0002534_34	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0002534_35	PHROG	phrog_824	NA	unknown function
UHGV-0002534_35	UniRef90	UniRef90_UPI000375638B	VRR-NUC domain-containing protein	NA
UHGV-0002534_35	eggNOG-mapper	1121935.AQXX01000130_gene2430	VRR-NUC domain	NA
UHGV-0002534_35	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0002534_35	Structural annotation	PF08774	NA	NA
UHGV-0002534_36	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0002534_37	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0002534_37	UniRef90	UniRef90_A0A1T4VYA5	Abortive infection bacteriophage resistance protein	NA
UHGV-0002534_37	eggNOG-mapper	938278.CAJO01000077_gene1234	Abi-like protein	NA
UHGV-0002534_37	PADLOC	AbiD	AbiD	Abi
UHGV-0002534_37	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0002534_37	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0002534_37	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0002534_39	Structural annotation	PF06530	NA	NA
UHGV-0002534_42	PHROG	phrog_8008	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0002534_42	UniRef90	UniRef90_UPI000F531EE6	Cro/CI family transcriptional regulator	NA
UHGV-0002534_42	eggNOG-mapper	765910.MARPU_05625	NA	NA
UHGV-0002534_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0002534_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0002534_43	UniRef90	UniRef90_F3QJB3	Peptidase S24-like protein	NA
UHGV-0002534_43	eggNOG-mapper	469610.HMPREF0189_01093	Peptidase S24-like	NA
UHGV-0002534_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0002534_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0002534_43	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0002534_43	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0002534_44	PHROG	phrog_3364	NA	unknown function
UHGV-0002534_44	eggNOG-mapper	632335.Calkr_2136	Histidine kinase-like ATPases	NA
UHGV-0002534_44	COG	COG1366	Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)	NA
UHGV-0002534_45	UniRef90	UniRef90_A0A448D5I0	NA	NA
UHGV-0002534_45	eggNOG-mapper	471870.BACINT_04496	NA	NA
UHGV-0002534_45	Pfam	PF14213	NA	DUF4325
UHGV-0002534_46	UniRef90	UniRef90_A0A2X0V9I1	Predicted transcriptional regulator	NA
UHGV-0002534_46	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0002534_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0002534_56	eggNOG-mapper	762983.HMPREF9444_00444	NA	NA
UHGV-0002534_57	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0002534_57	UniRef90	UniRef90_A0A1J6QPE5	Bro-N domain-containing protein	NA
UHGV-0002534_57	eggNOG-mapper	683083.C414_000080039	BRO family, N-terminal domain	NA
UHGV-0002534_57	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0002534_57	COG	COG3617	Prophage antirepressor	NA
UHGV-0002534_57	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0002534_59	PHROG	phrog_5783	NA	unknown function
UHGV-0002534_59	UniRef90	UniRef90_A0A0B2JTF8	Nuclease	NA
UHGV-0002534_59	eggNOG-mapper	1280706.AUJE01000016_gene29	NYN domain	NA
UHGV-0002534_59	Pfam	PF01936	NYN domain	NYN
UHGV-0002534_59	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0002534_59	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0002534	Yes	42,228 bps	37.59%	98.14%	0.9580
UHGV-0009472	No	43,967 bps	37.22%	99.90%	0.9536
UHGV-0032956	No	43,967 bps	37.22%	99.90%	0.9556
UHGV-0018869	No	40,732 bps	36.82%	99.90%	0.9539
UHGV-0029029	No	38,556 bps	37.38%	98.43%	0.9599
UHGV-0025102	No	38,502 bps	37.38%	98.30%	0.9614
UHGV-0009271	No	38,084 bps	37.36%	97.30%	0.9635
UHGV-0031608	No	38,084 bps	37.37%	94.74%	0.9689
UHGV-0029534	No	38,081 bps	37.37%	94.73%	0.9703
UHGV-0028087	No	37,814 bps	37.39%	94.01%	0.9713
UHGV-0030523	No	39,827 bps	37.11%	93.10%	0.9610
UHGV-0000048	No	37,280 bps	37.44%	92.69%	0.9712
UHGV-0026635	No	35,903 bps	37.45%	91.44%	0.9688
UHGV-0018075	No	34,516 bps	37.43%	88.13%	0.9652
UHGV-0000956	No	36,632 bps	37.44%	81.86%	0.9625
UHGV-0020436	No	36,227 bps	37.46%	79.87%	0.9620
UHGV-0030881	No	24,799 bps	37.67%	63.21%	0.9706
UHGV-0035675	No	24,653 bps	38.23%	56.12%	0.9732