vOTU-008156

Overview

vOTU representative UHGV-2023463

No. of genomes 11

Genome length 37,702 bps

Completeness 97.63% (high-quality)

Host Agathobacter

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-008156
Number of genomes	11
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00035 › vSUBFAM-00161 › vGENUS-12183 › vSUBGEN-18201 › vOTU-008156
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Agathobacter
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2023463
BioSample	NA
Genome length	37,702 bps
CheckV completeness	97.63% (high-quality)
CheckV contamination	0.00%
CDS count	50
CDS density	90.80%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2023463_1	KOfam	K00262	E1.4.1.4, gdhA; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]	NA
UHGV-2023463_1	UniRef90	UniRef90_A0A359JI07	NADP-specific glutamate dehydrogenase (Fragment)	NA
UHGV-2023463_1	eggNOG-mapper	585394.RHOM_14035	Belongs to the Glu Leu Phe Val dehydrogenases family	NA
UHGV-2023463_1	Pfam	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	ELFV_dehydrog
UHGV-2023463_1	COG	COG0334	Glutamate dehydrogenase/leucine dehydrogenase	NA
UHGV-2023463_2	KOfam	K14059	int; integrase	NA
UHGV-2023463_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2023463_2	UniRef90	UniRef90_A0A416Z2R8	Tyr recombinase domain-containing protein	NA
UHGV-2023463_2	eggNOG-mapper	585394.RHOM_14030	Belongs to the 'phage' integrase family	NA
UHGV-2023463_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2023463_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2023463_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2023463_3	PHROG	phrog_10934	NA	unknown function
UHGV-2023463_3	UniRef90	UniRef90_A0A174QNV3	Gp2	NA
UHGV-2023463_3	eggNOG-mapper	1391647.AVSV01000022_gene2581	NA	NA
UHGV-2023463_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2023463_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2023463_4	UniRef90	UniRef90_A0A1Q6KGJ8	Transcriptional regulator	NA
UHGV-2023463_4	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-2023463_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2023463_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2023463_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2023463_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2023463_5	UniRef90	UniRef90_A0A0M6WUE4	HTH cro/C1-type domain-containing protein	NA
UHGV-2023463_5	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-2023463_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2023463_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2023463_5	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2023463_7	PHROG	phrog_750	NA	unknown function
UHGV-2023463_7	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-2023463_7	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2023463_10	PHROG	phrog_36092	NA	unknown function
UHGV-2023463_10	eggNOG-mapper	411468.CLOSCI_01466	NA	NA
UHGV-2023463_11	UniRef90	UniRef90_D4KKX1	HTH_17 domain-containing protein	NA
UHGV-2023463_11	Structural annotation	PF12728, NF033787	NA	NA
UHGV-2023463_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2023463_13	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-2023463_14	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2023463_14	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2023463_14	UniRef90	UniRef90_A0A6N9R5T7	Ribonuclease H	NA
UHGV-2023463_14	eggNOG-mapper	1500301.JQMF01000007_gene1514	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2023463_14	Pfam	PF00075	RNase H	RNase_H
UHGV-2023463_14	COG	COG0328	Ribonuclease HI	NA
UHGV-2023463_14	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2023463_15	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2023463_15	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-2023463_15	Structural annotation	PF09889, NF001638, COG4068, COG4338	NA	NA
UHGV-2023463_16	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-2023463_17	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-2023463_18	PHROG	phrog_8470	NA	unknown function
UHGV-2023463_18	UniRef90	UniRef90_UPI001920BF2D	PcfJ domain-containing protein	NA
UHGV-2023463_18	eggNOG-mapper	445972.ANACOL_00981	PcfJ-like protein	NA
UHGV-2023463_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2023463_18	Structural annotation	PF14284	NA	NA
UHGV-2023463_19	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-2023463_19	UniRef90	UniRef90_UPI0019165AFE	NA	NA
UHGV-2023463_19	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-2023463_19	Pfam	PF12961	NA	DUF3850
UHGV-2023463_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2023463_19	Structural annotation	PF12961, PF11300, MF_00771, NF002615, COG2411	NA	NA
UHGV-2023463_20	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-2023463_20	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2023463_21	UniRef90	UniRef90_UPI001922D167	NA	NA
UHGV-2023463_21	eggNOG-mapper	622312.ROSEINA2194_04464	NA	NA
UHGV-2023463_21	Pfam	PF14199	NA	DUF4317
UHGV-2023463_21	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-2023463_22	PHROG	phrog_1558	NA	unknown function
UHGV-2023463_22	eggNOG-mapper	742741.HMPREF9475_00419	NA	NA
UHGV-2023463_22	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-2023463_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2023463_23	UniRef90	UniRef90_B0NDF8	HNH endonuclease domain protein	NA
UHGV-2023463_23	eggNOG-mapper	411468.CLOSCI_01486	NA	NA
UHGV-2023463_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2023463_24	UniRef90	UniRef90_A0A414EC99	Phage terminase small subunit P27 family	NA
UHGV-2023463_24	eggNOG-mapper	411468.CLOSCI_01487	Phage terminase, small subunit	NA
UHGV-2023463_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2023463_24	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2023463_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2023463_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2023463_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2023463_25	UniRef90	UniRef90_A0A174ZPG1	Phage terminase-like protein, large subunit	NA
UHGV-2023463_25	eggNOG-mapper	742741.HMPREF9475_00422	Phage Terminase	NA
UHGV-2023463_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2023463_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2023463_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2023463_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2023463_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-2023463_26	UniRef90	UniRef90_A0A174ZQ67	Phage portal protein, HK97 family	NA
UHGV-2023463_26	eggNOG-mapper	411468.CLOSCI_01489	Phage portal protein	NA
UHGV-2023463_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2023463_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2023463_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2023463_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2023463_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2023463_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2023463_27	UniRef90	UniRef90_A0A1C5T576	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2023463_27	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-2023463_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2023463_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2023463_27	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2023463_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-2023463_28	UniRef90	UniRef90_A0A174ZQ75	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2023463_28	eggNOG-mapper	742741.HMPREF9475_00425	Phage capsid family	NA
UHGV-2023463_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2023463_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2023463_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2023463_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2023463_29	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2023463_29	UniRef90	UniRef90_A0A412Q2I2	Phage gp6-like head-tail connector protein	NA
UHGV-2023463_29	eggNOG-mapper	411468.CLOSCI_01492	NA	NA
UHGV-2023463_29	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2023463_29	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2023463_30	UniRef90	UniRef90_A0A412T7B5	Phage head-tail joining protein	NA
UHGV-2023463_30	eggNOG-mapper	742741.HMPREF9475_00427	Phage head-tail joining protein	NA
UHGV-2023463_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2023463_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2023463_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2023463_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2023463_31	UniRef90	UniRef90_B0NDG6	Phage protein, HK97 gp10 family	NA
UHGV-2023463_31	eggNOG-mapper	411468.CLOSCI_01494	Phage protein, HK97 gp10 family	NA
UHGV-2023463_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2023463_31	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2023463_32	PHROG	phrog_78	tail terminator	connector
UHGV-2023463_32	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-2023463_32	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2023463_33	PHROG	phrog_88	major tail protein	tail
UHGV-2023463_33	UniRef90	UniRef90_A0A412Q217	Major tail protein	NA
UHGV-2023463_33	eggNOG-mapper	411468.CLOSCI_01496	phage major tail protein, phi13 family	NA
UHGV-2023463_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2023463_33	COG	COG5492	NA	NA
UHGV-2023463_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2023463_34	PHROG	phrog_13494	NA	unknown function
UHGV-2023463_34	eggNOG-mapper	411468.CLOSCI_01497	NA	NA
UHGV-2023463_34	Structural annotation	PF20378	NA	NA
UHGV-2023463_35	PHROG	phrog_25901	NA	unknown function
UHGV-2023463_35	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-2023463_35	Structural annotation	PF10109	NA	NA
UHGV-2023463_36	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-2023463_36	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2023463_36	UniRef90	UniRef90_A0A350S489	PhageMin_Tail domain-containing protein	NA
UHGV-2023463_36	eggNOG-mapper	411468.CLOSCI_01499	Phage tail tape measure protein, TP901 family	NA
UHGV-2023463_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2023463_36	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-2023463_36	Structural annotation	PF10145, PF05384, TIGR01760, NF006545, COG5280	NA	NA
UHGV-2023463_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2023463_37	UniRef90	UniRef90_UPI001D05C493	phage tail family protein	NA
UHGV-2023463_37	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-2023463_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-2023463_37	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-2023463_38	PHROG	phrog_18110	NA	unknown function
UHGV-2023463_38	UniRef90	UniRef90_H1BAL5	Phage minor structural protein	NA
UHGV-2023463_38	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-2023463_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2023463_38	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2023463_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2023463_38	COG	COG4926	Phage-related protein	NA
UHGV-2023463_38	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-2023463_39	KOfam	K19470	C1QTNF1_6_8; complement C1q tumor necrosis factor-related protein 1/6/8	NA
UHGV-2023463_39	PHROG	phrog_31398	NA	unknown function
UHGV-2023463_39	UniRef90	UniRef90_A0A1C6KJ53	Collagen triple helix repeat (20 copies)	NA
UHGV-2023463_39	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-2023463_39	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2023463_39	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2023463_39	Structural annotation	PF10651, NF032891, COG2372	NA	NA
UHGV-2023463_40	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-2023463_40	PHROG	phrog_6320	tail fiber protein	tail
UHGV-2023463_40	eggNOG-mapper	641107.CDLVIII_1355	NA	NA
UHGV-2023463_40	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2023463_41	eggNOG-mapper	610130.Closa_0760	NA	NA
UHGV-2023463_42	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2023463_43	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2023463_43	PHROG	phrog_1	integrase	integration and excision
UHGV-2023463_43	UniRef90	UniRef90_UPI001EE81DF9	tyrosine-type recombinase/integrase	NA
UHGV-2023463_43	eggNOG-mapper	1235790.C805_00378	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2023463_43	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2023463_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2023463_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2023463_43	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2023463_45	PHROG	phrog_937	hemolysin	other
UHGV-2023463_46	PHROG	phrog_443	holin	lysis
UHGV-2023463_46	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-2023463_46	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-2023463_46	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2023463_46	Structural annotation	PF16945	NA	NA
UHGV-2023463_47	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2023463_47	PHROG	phrog_435	endolysin	lysis
UHGV-2023463_47	UniRef90	UniRef90_A0A173UCF2	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-2023463_47	eggNOG-mapper	1232447.BAHW02000005_gene156	Cell wall hydrolase autolysin	NA
UHGV-2023463_47	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2023463_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2023463_47	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-2023463_48	PHROG	phrog_33061	NA	unknown function
UHGV-2023463_48	eggNOG-mapper	411468.CLOSCI_01514	NA	NA
UHGV-2023463_48	Structural annotation	PF19087, NF033202	NA	NA
UHGV-2023463_49	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2023463_49	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2023463_49	UniRef90	UniRef90_B0NDI7	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-2023463_49	eggNOG-mapper	411468.CLOSCI_01515	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2023463_49	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2023463_49	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2023463_49	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2023463_50	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2023463_50	UniRef90	UniRef90_B0NDI8	Toxin-antitoxin system, toxin component, HicA family	NA
UHGV-2023463_50	eggNOG-mapper	411468.CLOSCI_01516	periplasmic or secreted lipoprotein	NA
UHGV-2023463_50	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2023463_50	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2023463_50	Structural annotation	PF07927, COG1724	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2023463	Yes	37,702 bps	43.90%	97.63%	0.9813
UHGV-0096524	No	36,651 bps	44.17%	94.91%	0.9810
UHGV-1341966	No	36,075 bps	44.09%	93.42%	0.9816
UHGV-1463799	No	35,538 bps	44.22%	92.03%	0.9816
UHGV-0006545	No	35,601 bps	44.30%	91.93%	0.9810
UHGV-1498965	No	35,254 bps	44.36%	90.44%	0.9818
UHGV-0183195	No	31,507 bps	44.71%	81.59%	0.9825
UHGV-2083096	No	31,233 bps	44.67%	80.61%	0.9825
UHGV-0114254	No	26,092 bps	44.61%	66.85%	0.9812
UHGV-1797463	No	12,993 bps	44.09%	33.60%	0.9833
UHGV-1707050	No	10,963 bps	44.42%	28.36%	0.9831