vOTU-008602

Overview

No. of genomes 5

Genome length 33,248 bps

Completeness 98.61% (high-quality)

Host Clostridium P ventriculi

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-008602
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-03086 › vGENUS-04224 › vSUBGEN-27092 › vOTU-008602
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Clostridiales › Clostridiaceae › Clostridium P › Clostridium P ventriculi
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0017445
BioSample	SAMEA4766059
Genome length	33,248 bps
CheckV completeness	98.61% (high-quality)
CheckV contamination	0.00%
CDS count	46
CDS density	87.64%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0017445_1	PHROG	phrog_9996	NA	unknown function
UHGV-0017445_1	UniRef90	UniRef90_A0A7U4JPX3	Replication-relaxation protein	NA
UHGV-0017445_1	eggNOG-mapper	1415774.U728_1053	NA	NA
UHGV-0017445_1	Pfam	PF13814	Replication-relaxation	Replic_Relax
UHGV-0017445_3	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0017445_3	UniRef90	UniRef90_A0A2U3Q6R6	GTP cyclohydrolase II	NA
UHGV-0017445_3	eggNOG-mapper	398525.KB900701_gene7662	HNH nucleases	NA
UHGV-0017445_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0017445_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0017445_5	UniRef90	UniRef90_UPI0009EC2495	helix-turn-helix transcriptional regulator	NA
UHGV-0017445_5	eggNOG-mapper	1211817.CCAT010000003_gene272	Helix-turn-helix XRE-family like proteins	NA
UHGV-0017445_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0017445_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0017445_5	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0017445_6	UniRef90	UniRef90_UPI00073E7EFA	helix-turn-helix domain-containing protein	NA
UHGV-0017445_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0017445_6	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0017445_8	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0017445_8	UniRef90	UniRef90_UPI00073EF250	replication initiator protein A	NA
UHGV-0017445_8	eggNOG-mapper	573061.Clocel_2452	DnaD domain protein	NA
UHGV-0017445_8	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0017445_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0017445_8	Structural annotation	PF06970, NF040939, COG3355	NA	NA
UHGV-0017445_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0017445_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0017445_9	UniRef90	UniRef90_UPI00073ED0B4	replicative DNA helicase	NA
UHGV-0017445_9	eggNOG-mapper	1499684.CCNP01000025_gene3637	DnaB-like helicase N terminal domain	NA
UHGV-0017445_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0017445_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0017445_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-0017445_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0017445_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0017445_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0017445_10	UniRef90	UniRef90_UPI00073F5ED6	single-stranded DNA-binding protein	NA
UHGV-0017445_10	eggNOG-mapper	190478.Q8SBL5_9CAUD	Single-strand binding protein family	NA
UHGV-0017445_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0017445_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0017445_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0017445_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0017445_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0017445_14	UniRef90	UniRef90_UPI00073E4E5C	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0017445_14	eggNOG-mapper	293826.Amet_2405	sigma factor activity	NA
UHGV-0017445_14	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0017445_15	PHROG	phrog_3928	NA	unknown function
UHGV-0017445_15	Pfam	PF17910	FeoB cytosolic helical domain	FeoB_Cyto
UHGV-0017445_16	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0017445_16	PHROG	phrog_216	integrase	integration and excision
UHGV-0017445_16	UniRef90	UniRef90_A0A2Z4WFF3	Site-specific integrase	NA
UHGV-0017445_16	eggNOG-mapper	1211817.CCAT010000008_gene935	integrase family	NA
UHGV-0017445_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0017445_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0017445_16	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0017445_19	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0017445_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0017445_19	UniRef90	UniRef90_UPI00164ABAC9	HNH endonuclease	NA
UHGV-0017445_19	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0017445_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0017445_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0017445_20	PHROG	phrog_4151	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0017445_20	UniRef90	UniRef90_A0A316S8M2	RNA polymerase subunit sigma-70	NA
UHGV-0017445_20	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-0017445_20	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0017445_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0017445_20	COG	COG5484	NA	NA
UHGV-0017445_20	Structural annotation	PF05119, PF06056, TIGR01558, COG3747	NA	NA
UHGV-0017445_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0017445_21	UniRef90	UniRef90_UPI000543D394	terminase large subunit	NA
UHGV-0017445_21	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-0017445_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0017445_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0017445_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0017445_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0017445_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0017445_22	UniRef90	UniRef90_UPI00164CC1C1	phage portal protein	NA
UHGV-0017445_22	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0017445_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0017445_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0017445_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0017445_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0017445_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0017445_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0017445_23	UniRef90	UniRef90_A0A1C5YER3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0017445_23	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0017445_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0017445_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0017445_23	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0017445_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0017445_24	UniRef90	UniRef90_UPI00164AB0C3	phage major capsid protein	NA
UHGV-0017445_24	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0017445_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0017445_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0017445_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0017445_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0017445_25	PHROG	phrog_749	NA	unknown function
UHGV-0017445_25	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0017445_25	eggNOG-mapper	1139219.I569_00234	NA	NA
UHGV-0017445_26	PHROG	phrog_11176	head-tail adaptor	connector
UHGV-0017445_26	UniRef90	UniRef90_E2ELI7	Putative phage head-tail adaptor	NA
UHGV-0017445_26	eggNOG-mapper	1158607.UAU_01034	NA	NA
UHGV-0017445_26	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0017445_26	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0017445_26	Structural annotation	PF05521, PF07405, TIGR01563, COG5614	NA	NA
UHGV-0017445_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0017445_27	eggNOG-mapper	1499684.CCNP01000020_gene2283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0017445_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0017445_27	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0017445_27	Structural annotation	TIGR01725	NA	NA
UHGV-0017445_28	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0017445_29	PHROG	phrog_88	major tail protein	tail
UHGV-0017445_29	UniRef90	UniRef90_B1V2P3	Phage major tail protein, Phi13 family	NA
UHGV-0017445_29	eggNOG-mapper	536233.CLO_1368	phage major tail protein, phi13 family	NA
UHGV-0017445_29	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0017445_29	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0017445_30	eggNOG-mapper	1476973.JMMB01000007_gene1770	NA	NA
UHGV-0017445_31	KOfam	K16551	AKAP9, AKAP350; A-kinase anchor protein 9	NA
UHGV-0017445_31	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0017445_31	UniRef90	UniRef90_B1V2P5	Putative phage tail tape measure protein, family, core region domain protein	NA
UHGV-0017445_31	eggNOG-mapper	1151292.QEW_0351	Phage-related minor tail protein	NA
UHGV-0017445_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0017445_31	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0017445_31	COG	COG5283	Phage-related tail protein	NA
UHGV-0017445_31	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0017445_32	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0017445_32	UniRef90	UniRef90_UPI001CB27C40	phage tail family protein	NA
UHGV-0017445_32	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0017445_32	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0017445_32	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0017445_33	PHROG	phrog_8687	tail protein with peptidase activity	other
UHGV-0017445_33	UniRef90	UniRef90_UPI00073F9303	phage tail protein	NA
UHGV-0017445_33	eggNOG-mapper	698769.JFBD01000002_gene2727	cellulase activity	NA
UHGV-0017445_33	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0017445_33	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0017445_33	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0017445_35	PHROG	phrog_22899	NA	unknown function
UHGV-0017445_35	UniRef90	UniRef90_UPI00073E5941	BspA family leucine-rich repeat surface protein	NA
UHGV-0017445_35	eggNOG-mapper	445335.CBN_2969	Phage tail-collar fibre protein	NA
UHGV-0017445_35	Pfam	PF03382	NA	DUF285
UHGV-0017445_35	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0017445_35	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0017445_35	Structural annotation	PF03382	NA	NA
UHGV-0017445_37	PHROG	phrog_199	holin	lysis
UHGV-0017445_37	UniRef90	UniRef90_UPI00073F5B1F	phage holin family protein	NA
UHGV-0017445_37	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0017445_37	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0017445_37	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0017445_37	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0017445_38	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0017445_38	PHROG	phrog_670	endolysin	lysis
UHGV-0017445_38	UniRef90	UniRef90_UPI0009EA7BE7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0017445_38	eggNOG-mapper	641107.CDLVIII_1361	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0017445_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0017445_38	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0017445_38	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0017445_39	PHROG	phrog_2277	NA	unknown function
UHGV-0017445_39	eggNOG-mapper	1027396.LMOSA_9780	NA	NA
UHGV-0017445_42	UniRef90	UniRef90_UPI0018AB7309	RICIN domain-containing protein	NA
UHGV-0017445_42	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0017445_42	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0017445_43	PHROG	phrog_8263	NA	unknown function
UHGV-0017445_43	UniRef90	UniRef90_A0A8F3T064	VanZ family protein	NA
UHGV-0017445_43	eggNOG-mapper	1145276.T479_16120	NA	NA
UHGV-0017445_44	PHROG	phrog_18939	NA	unknown function
UHGV-0017445_45	PHROG	phrog_14312	NA	unknown function

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0017445	Yes	33,248 bps	27.47%	98.61%	0.9425
UHGV-0016566	No	37,079 bps	27.58%	99.90%	0.9476
UHGV-0015622	No	35,560 bps	27.56%	99.90%	0.9554
UHGV-0360662	No	32,652 bps	27.81%	96.84%	0.9606
UHGV-0016570	No	20,976 bps	28.37%	62.21%	0.9680