vOTU-008974

Overview

No. of genomes 25

Genome length 34,061 bps

Completeness 99.90% (high-quality)

Host CAG-217 sp000436335

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-008974
Number of genomes	25
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00035 › vSUBFAM-00258 › vGENUS-00437 › vSUBGEN-00218 › vOTU-008974
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Acutalibacteraceae › CAG-217 › CAG-217 sp000436335
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0090562
BioSample	SAMEA3449374
Genome length	34,061 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	50
CDS density	91.49%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090562_3	Structural annotation	PF19923, NF009981, COG0355	NA	NA
UHGV-0090562_4	UniRef90	UniRef90_A0A315YPS7	Helix-turn-helix protein	NA
UHGV-0090562_4	eggNOG-mapper	1408312.JNJS01000001_gene1338	sequence-specific DNA binding	NA
UHGV-0090562_4	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0090562_6	UniRef90	UniRef90_R6J3S0	Peptidase_C39_2 domain-containing protein	NA
UHGV-0090562_6	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0090562_6	Structural annotation	PF11814, NF033920, COG4990	NA	NA
UHGV-0090562_7	PHROG	phrog_263	holin	lysis
UHGV-0090562_7	UniRef90	UniRef90_R6JQI4	Holin SPP1 family	NA
UHGV-0090562_7	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-0090562_7	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0090562_7	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0090562_7	Structural annotation	PF04688	NA	NA
UHGV-0090562_8	PHROG	phrog_4105	NA	unknown function
UHGV-0090562_8	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0090562_9	UniRef90	UniRef90_R6J123	ATP synthase B chain	NA
UHGV-0090562_10	UniRef90	UniRef90_A0A316R9D9	BppU_N domain-containing protein	NA
UHGV-0090562_10	eggNOG-mapper	641107.CDLVIII_4353	NA	NA
UHGV-0090562_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0090562_10	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0090562_11	PHROG	phrog_13289	tail protein	tail
UHGV-0090562_11	UniRef90	UniRef90_A0A316RM27	Prophage_tail domain-containing protein	NA
UHGV-0090562_11	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0090562_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0090562_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0090562_11	COG	COG4926	Phage-related protein	NA
UHGV-0090562_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0090562_12	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0090562_12	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0090562_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0090562_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0090562_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0090562_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0090562_13	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0090562_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0090562_13	UniRef90	UniRef90_A0A316R7C3	Phage tail tape measure protein	NA
UHGV-0090562_13	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-0090562_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0090562_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0090562_14	PHROG	phrog_25901	NA	unknown function
UHGV-0090562_14	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-0090562_15	PHROG	phrog_13494	NA	unknown function
UHGV-0090562_15	eggNOG-mapper	742741.HMPREF9475_00431	NA	NA
UHGV-0090562_16	PHROG	phrog_88	major tail protein	tail
UHGV-0090562_16	UniRef90	UniRef90_A0A316RAJ2	Major tail protein	NA
UHGV-0090562_16	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0090562_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0090562_16	COG	COG5492	NA	NA
UHGV-0090562_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0090562_17	PHROG	phrog_78	tail terminator	connector
UHGV-0090562_17	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0090562_17	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0090562_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0090562_18	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-0090562_18	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-0090562_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0090562_18	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0090562_19	UniRef90	UniRef90_A0A316R8D9	Phage head-tail adapter protein	NA
UHGV-0090562_19	eggNOG-mapper	195103.CPF_1582	Phage head-tail adaptor	NA
UHGV-0090562_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0090562_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0090562_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0090562_20	UniRef90	UniRef90_A0A316R9F5	Phage gp6-like head-tail connector protein	NA
UHGV-0090562_20	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-0090562_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0090562_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0090562_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0090562_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0090562_21	UniRef90	UniRef90_A0A316RM35	Phage major capsid protein	NA
UHGV-0090562_21	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0090562_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0090562_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0090562_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0090562_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0090562_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0090562_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0090562_22	UniRef90	UniRef90_A0A316R8I3	Clp protease	NA
UHGV-0090562_22	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-0090562_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0090562_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0090562_22	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0090562_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0090562_23	UniRef90	UniRef90_A0A316R7D3	Phage portal protein	NA
UHGV-0090562_23	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0090562_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0090562_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0090562_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0090562_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0090562_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0090562_24	UniRef90	UniRef90_A0A316R7M0	Terminase large subunit	NA
UHGV-0090562_24	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-0090562_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0090562_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0090562_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0090562_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0090562_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0090562_25	UniRef90	UniRef90_A0A316RD76	Phage terminase small subunit P27 family	NA
UHGV-0090562_25	eggNOG-mapper	411468.CLOSCI_01487	Phage terminase, small subunit	NA
UHGV-0090562_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0090562_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0090562_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0090562_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090562_26	UniRef90	UniRef90_A0A844FGQ3	HNH endonuclease	NA
UHGV-0090562_26	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-0090562_27	PHROG	phrog_1558	NA	unknown function
UHGV-0090562_27	UniRef90	UniRef90_A0A316RAK3	Sigma70_r4_2 domain-containing protein	NA
UHGV-0090562_27	eggNOG-mapper	1151292.QEW_2462	NA	NA
UHGV-0090562_27	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0090562_27	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0090562_31	PHROG	phrog_15609	NA	unknown function
UHGV-0090562_31	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0090562_31	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0090562_32	PHROG	phrog_8470	NA	unknown function
UHGV-0090562_32	UniRef90	UniRef90_UPI001C0AE9DA	PcfJ domain-containing protein	NA
UHGV-0090562_32	eggNOG-mapper	1117108.PAALTS15_13637	PcfJ-like protein	NA
UHGV-0090562_32	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0090562_32	Structural annotation	PF14284	NA	NA
UHGV-0090562_33	PHROG	phrog_35860	NA	unknown function
UHGV-0090562_33	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0090562_33	eggNOG-mapper	742740.HMPREF9474_03120	PcfK-like protein	NA
UHGV-0090562_33	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0090562_36	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0090562_36	UniRef90	UniRef90_R6ISF1	NA	NA
UHGV-0090562_36	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0090562_36	Pfam	PF06356	NA	DUF1064
UHGV-0090562_36	Structural annotation	PF06356	NA	NA
UHGV-0090562_37	PHROG	phrog_34937	NA	unknown function
UHGV-0090562_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0090562_38	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0090562_38	Structural annotation	PF21578	NA	NA
UHGV-0090562_40	PHROG	phrog_33952	NA	unknown function
UHGV-0090562_41	PHROG	phrog_668	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0090562_42	UniRef90	UniRef90_A0A316R8G0	HTH cro/C1-type domain-containing protein	NA
UHGV-0090562_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090562_42	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0090562_43	UniRef90	UniRef90_R5L0Y8	HTH cro/C1-type domain-containing protein	NA
UHGV-0090562_44	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0090562_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090562_44	UniRef90	UniRef90_R6ILS1	HTH cro/C1-type domain-containing protein	NA
UHGV-0090562_44	eggNOG-mapper	1235790.C805_01005	Helix-turn-helix domain protein	NA
UHGV-0090562_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090562_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0090562_44	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0090562_45	PHROG	phrog_87	metallo-protease	other
UHGV-0090562_45	UniRef90	UniRef90_A0A316RCR6	Peptidase_M78 domain-containing protein	NA
UHGV-0090562_45	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0090562_45	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0090562_45	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0090562_45	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0090562_46	PHROG	phrog_16443	NA	unknown function
UHGV-0090562_46	eggNOG-mapper	1118057.CAGX01000058_gene115	NA	NA
UHGV-0090562_47	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0090562_47	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0090562_47	UniRef90	UniRef90_A0A316R7F3	Exonuclease domain-containing protein	NA
UHGV-0090562_47	eggNOG-mapper	545694.TREPR_3623	EXOIII	NA
UHGV-0090562_47	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0090562_47	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0090562_47	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0090562_47	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0090562_48	KOfam	K14059	int; integrase	NA
UHGV-0090562_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0090562_48	UniRef90	UniRef90_A0A316RE68	Tyr recombinase domain-containing protein	NA
UHGV-0090562_48	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0090562_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090562_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090562_48	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0090562_49	PHROG	phrog_22978	NA	unknown function
UHGV-0090562_50	KOfam	K02358	tuf, TUFM; elongation factor Tu	NA
UHGV-0090562_50	PHROG	phrog_6880	translation elongation factor	other
UHGV-0090562_50	UniRef90	UniRef90_R6QSF7	Elongation factor Tu	NA
UHGV-0090562_50	eggNOG-mapper	428125.CLOLEP_03947	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis	NA
UHGV-0090562_50	Pfam	PF00009	Elongation factor Tu GTP binding domain	GTP_EFTU
UHGV-0090562_50	Pfam	PF03144	Elongation factor Tu domain 2	GTP_EFTU_D2
UHGV-0090562_50	Pfam	PF03143	Elongation factor Tu C-terminal domain	GTP_EFTU_D3
UHGV-0090562_50	NCBIFam	NF000766.0	elongation factor Tu	NA
UHGV-0090562_50	COG	COG0050	Translation elongation factor EF-Tu, a GTPase	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0090562	Yes	34,061 bps	51.67%	99.90%	0.9733
UHGV-0079434	No	37,059 bps	50.94%	99.90%	0.9800
UHGV-0094250	No	30,239 bps	51.53%	93.95%	0.9790
UHGV-1441374	No	29,248 bps	51.81%	90.93%	0.9819
UHGV-1540330	No	27,740 bps	52.19%	86.22%	0.9818
UHGV-1418425	No	24,261 bps	51.39%	75.40%	0.9822
UHGV-0066955	No	23,328 bps	52.22%	72.54%	0.9800
UHGV-1467554	No	22,482 bps	51.29%	69.87%	0.9821
UHGV-2166681	No	21,379 bps	51.67%	66.44%	0.9812
UHGV-1422061	No	20,752 bps	51.67%	64.49%	0.9798
UHGV-1438163	No	17,804 bps	51.88%	55.34%	0.9830
UHGV-1438164	No	17,804 bps	51.88%	55.34%	0.9830
UHGV-1867829	No	17,216 bps	52.59%	53.51%	0.9818
UHGV-2150567	No	17,210 bps	51.96%	53.50%	0.9821
UHGV-1394797	No	17,051 bps	51.93%	53.01%	0.9819
UHGV-2177159	No	14,677 bps	50.99%	45.61%	0.9760
UHGV-1862265	No	13,855 bps	51.60%	43.06%	0.9826
UHGV-1708741	No	12,993 bps	52.35%	40.39%	0.9830
UHGV-1683001	No	12,620 bps	51.48%	39.22%	0.9819
UHGV-2184860	No	12,410 bps	52.65%	38.21%	0.9807
UHGV-1591016	No	11,698 bps	52.34%	36.36%	0.9829
UHGV-1553197	No	11,284 bps	51.94%	35.08%	0.9828
UHGV-1547540	No	11,225 bps	52.22%	34.89%	0.9828
UHGV-1555078	No	11,225 bps	52.23%	34.89%	0.9828
UHGV-1866770	No	10,470 bps	50.91%	32.53%	0.9803