vOTU-009307

Overview

No. of genomes 4

Genome length 36,425 bps

Completeness 99.90% (high-quality)

Host Treponema D sp900541995

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-009307
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-08115 › vGENUS-22643 › vSUBGEN-44850 › vOTU-009307
Host taxonomy	Bacteria › Spirochaetota › Spirochaetia › Treponematales › Treponemataceae › Treponema D › Treponema D sp900541995
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0005067
BioSample	SAMEA4766006
Genome length	36,425 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	45
CDS density	94.04%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0005067_1	PHROG	phrog_18110	NA	unknown function
UHGV-0005067_1	UniRef90	UniRef90_A0A564VXL8	Bacterial Ig-like domain (Group 2)	NA
UHGV-0005067_1	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0005067_1	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0005067_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0005067_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0005067_1	COG	COG4926	Phage-related protein	NA
UHGV-0005067_2	Structural annotation	PF07761	NA	NA
UHGV-0005067_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0005067_3	UniRef90	UniRef90_A0A1C6IW65	Phage tail protein	NA
UHGV-0005067_3	eggNOG-mapper	1391647.AVSV01000039_gene1109	phage tail	NA
UHGV-0005067_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0005067_3	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0005067_4	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0005067_4	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0005067_4	UniRef90	UniRef90_UPI0016556A77	phage tail tape measure protein	NA
UHGV-0005067_4	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-0005067_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0005067_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0005067_4	COG	COG5283	Phage-related tail protein	NA
UHGV-0005067_6	KOfam	K13582	podJ; localization factor PodJL	NA
UHGV-0005067_6	PHROG	phrog_34415	NA	unknown function
UHGV-0005067_6	UniRef90	UniRef90_A0A416QWP9	Peptidoglycan-binding protein	NA
UHGV-0005067_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0005067_6	COG	COG0790	TPR repeat	NA
UHGV-0005067_7	PHROG	phrog_2115	tail protein	tail
UHGV-0005067_7	Structural annotation	PF11836	NA	NA
UHGV-0005067_8	PHROG	phrog_88	major tail protein	tail
UHGV-0005067_8	UniRef90	UniRef90_A0A1C6KA12	Phage major tail protein, phi13 family	NA
UHGV-0005067_8	eggNOG-mapper	1329516.JPST01000017_gene420	Phage tail tube protein	NA
UHGV-0005067_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0005067_8	COG	COG5492	NA	NA
UHGV-0005067_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0005067_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0005067_9	UniRef90	UniRef90_A0A1C6KB54	Phage protein, HK97 gp10 family	NA
UHGV-0005067_9	eggNOG-mapper	97139.C824_05967	Phage protein, HK97 gp10 family	NA
UHGV-0005067_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0005067_9	Structural annotation	TIGR01725	NA	NA
UHGV-0005067_10	Structural annotation	PF05657	NA	NA
UHGV-0005067_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0005067_11	UniRef90	UniRef90_A0A4R3N8W9	SPP1 family predicted phage head-tail adaptor	NA
UHGV-0005067_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0005067_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0005067_12	PHROG	phrog_5223	neck protein	connector
UHGV-0005067_12	UniRef90	UniRef90_UPI001CFD5E65	head-tail connector protein	NA
UHGV-0005067_12	eggNOG-mapper	1203606.HMPREF1526_00977	NA	NA
UHGV-0005067_13	PHROG	phrog_2724	NA	unknown function
UHGV-0005067_13	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0005067_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0005067_14	UniRef90	UniRef90_A0A1C6KA65	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0005067_14	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-0005067_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0005067_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0005067_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0005067_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0005067_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0005067_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0005067_15	UniRef90	UniRef90_A0A1C6KA38	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0005067_15	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0005067_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0005067_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0005067_15	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0005067_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0005067_16	UniRef90	UniRef90_A0A1C6K9V7	Phage portal protein, HK97 family	NA
UHGV-0005067_16	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0005067_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0005067_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0005067_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0005067_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0005067_17	UniRef90	UniRef90_A0A1C6K9N5	Phage terminase-like protein, large subunit	NA
UHGV-0005067_17	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0005067_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0005067_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0005067_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0005067_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0005067_18	PHROG	phrog_1066	NA	unknown function
UHGV-0005067_18	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0005067_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0005067_19	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0005067_19	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0005067_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0005067_20	UniRef90	UniRef90_UPI00156EF43B	chemotaxis protein	NA
UHGV-0005067_20	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0005067_20	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0005067_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0005067_22	UniRef90	UniRef90_A0A3A6HTW3	Sigma70_r4 domain-containing protein	NA
UHGV-0005067_22	eggNOG-mapper	411460.RUMTOR_02080	NA	NA
UHGV-0005067_22	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0005067_24	PHROG	phrog_7566	NA	unknown function
UHGV-0005067_24	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-0005067_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0005067_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0005067_26	UniRef90	UniRef90_A0A1C5RPL4	Single-stranded DNA-binding protein	NA
UHGV-0005067_26	eggNOG-mapper	478749.BRYFOR_09630	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0005067_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0005067_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0005067_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0005067_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0005067_26	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0005067_30	PHROG	phrog_15077	NA	unknown function
UHGV-0005067_30	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0005067_30	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0005067_30	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0005067_31	PHROG	phrog_8470	NA	unknown function
UHGV-0005067_31	UniRef90	UniRef90_UPI001158FAD9	PcfJ domain-containing protein	NA
UHGV-0005067_31	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0005067_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0005067_31	Structural annotation	PF14284	NA	NA
UHGV-0005067_32	PHROG	phrog_4433	NA	unknown function
UHGV-0005067_32	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-0005067_32	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0005067_32	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0005067_33	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-0005067_34	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0005067_34	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0005067_34	UniRef90	UniRef90_A0A1C5RPI3	Ribonuclease H	NA
UHGV-0005067_34	eggNOG-mapper	1502724.FF80_01377	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0005067_34	COG	COG0328	Ribonuclease HI	NA
UHGV-0005067_34	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0005067_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0005067_35	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-0005067_35	Structural annotation	PF01446	NA	NA
UHGV-0005067_41	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0005067_43	UniRef90	UniRef90_UPI001D09355C	helix-turn-helix domain-containing protein	NA
UHGV-0005067_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0005067_43	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0005067_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0005067_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0005067_44	UniRef90	UniRef90_UPI001D09408C	helix-turn-helix domain-containing protein	NA
UHGV-0005067_44	eggNOG-mapper	632245.CLP_2722	Helix-turn-helix XRE-family like proteins	NA
UHGV-0005067_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0005067_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0005067_44	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0005067_45	PHROG	phrog_87	metallo-protease	other
UHGV-0005067_45	UniRef90	UniRef90_A0A373A9Y6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0005067_45	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0005067_45	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0005067_45	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0005067_45	Structural annotation	PF06114, COG2856	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0005067	Yes	36,425 bps	42.87%	99.90%	0.9786
UHGV-0016780	No	44,092 bps	42.44%	99.90%	0.9730
UHGV-0009004	No	36,410 bps	42.86%	99.90%	0.9769
UHGV-0027213	No	24,535 bps	43.45%	69.54%	0.9817