vOTU-009310

Overview

vOTU representative UHGV-0200056

No. of genomes 3

Genome length 34,187 bps

Completeness 99.90% (high-quality)

Host ERR7738584 bin.110

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-009310
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-00317 › vGENUS-09868 › vSUBGEN-12217 › vOTU-009310
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › Limivicinus › ERR7738584 bin.110
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0200056
BioSample	SAMN09781741
Genome length	34,187 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	51
CDS density	93.17%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0200056_1	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0200056_1	UniRef90	UniRef90_A0A329UW53	NA	NA
UHGV-0200056_1	eggNOG-mapper	1203606.HMPREF1526_00235	NA	NA
UHGV-0200056_1	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0200056_3	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0200056_3	UniRef90	UniRef90_A0A329UR39	NA	NA
UHGV-0200056_3	eggNOG-mapper	1449126.JQKL01000006_gene838	NA	NA
UHGV-0200056_3	Pfam	PF10926	NA	DUF2800
UHGV-0200056_3	COG	COG2887	RecB family exonuclease	NA
UHGV-0200056_3	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0200056_4	PHROG	phrog_22695	NA	unknown function
UHGV-0200056_4	eggNOG-mapper	1120746.CCNL01000014_gene2206	NA	NA
UHGV-0200056_6	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0200056_6	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0200056_6	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0200056_7	PHROG	phrog_38832	NA	unknown function
UHGV-0200056_7	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0200056_10	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0200056_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0200056_12	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0200056_14	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0200056_14	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0200056_14	UniRef90	UniRef90_A0A3D4EJF0	XRE family transcriptional regulator	NA
UHGV-0200056_14	eggNOG-mapper	1203606.HMPREF1526_00992	Helix-turn-helix XRE-family like proteins	NA
UHGV-0200056_14	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0200056_14	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0200056_14	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0200056_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0200056_15	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0200056_15	UniRef90	UniRef90_UPI001BB47897	helix-turn-helix domain-containing protein	NA
UHGV-0200056_15	eggNOG-mapper	1123511.KB905843_gene986	sequence-specific DNA binding	NA
UHGV-0200056_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200056_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0200056_15	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0200056_16	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0200056_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0200056_16	UniRef90	UniRef90_A0A1D8GBT2	Transcriptional regulator	NA
UHGV-0200056_16	eggNOG-mapper	556261.HMPREF0240_02716	sequence-specific DNA binding	NA
UHGV-0200056_16	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0200056_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200056_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0200056_16	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0200056_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200056_17	Structural annotation	PF13443, TIGR03070, COG3655	NA	NA
UHGV-0200056_19	KOfam	K14059	int; integrase	NA
UHGV-0200056_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0200056_19	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-0200056_19	eggNOG-mapper	742738.HMPREF9460_04031	Phage integrase family	NA
UHGV-0200056_19	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0200056_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0200056_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0200056_19	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0200056_20	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0200056_20	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0200056_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0200056_22	PHROG	phrog_16490	NA	unknown function
UHGV-0200056_22	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0200056_24	Structural annotation	PF20477, NF033819	NA	NA
UHGV-0200056_25	UniRef90	UniRef90_UPI0013C3FC23	chromate transporter	NA
UHGV-0200056_25	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0200056_29	PHROG	phrog_608	holin	lysis
UHGV-0200056_29	UniRef90	UniRef90_A0A1I3T262	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0200056_29	eggNOG-mapper	1336234.JAGN01000004_gene510	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0200056_29	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0200056_29	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0200056_30	UniRef90	UniRef90_A0A3A9IW95	Branched-chain amino acid ABC transporter permease	NA
UHGV-0200056_30	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0200056_31	PHROG	phrog_14030	NA	unknown function
UHGV-0200056_31	UniRef90	UniRef90_A0A1Y4F0G2	PG_binding_1 domain-containing protein	NA
UHGV-0200056_31	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0200056_31	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0200056_31	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0200056_31	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0200056_31	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0200056_34	PHROG	phrog_5302	tail protein	tail
UHGV-0200056_34	UniRef90	UniRef90_R6M197	Ig-like_bact domain-containing protein	NA
UHGV-0200056_34	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0200056_34	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0200056_34	Structural annotation	PF14686, TIGR03000, COG1262	NA	NA
UHGV-0200056_35	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0200056_35	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0200056_35	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0200056_35	Pfam	PF17891	Mu-like prophage FluMu N-terminal domain	FluMu_N
UHGV-0200056_35	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0200056_35	NCBIFam	NF038313.3	His-Xaa-Ser repeat protein HxsA4	NA
UHGV-0200056_35	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0200056_36	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-0200056_37	PHROG	phrog_26795	NA	unknown function
UHGV-0200056_37	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0200056_37	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0200056_38	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0200056_38	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0200056_38	Structural annotation	PF02010, PF06995, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0200056_39	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0200056_39	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0200056_39	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0200056_39	COG	COG5283	Phage-related tail protein	NA
UHGV-0200056_39	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0200056_41	PHROG	phrog_88	major tail protein	tail
UHGV-0200056_41	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0200056_41	COG	COG5492	NA	NA
UHGV-0200056_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0200056_42	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0200056_42	Structural annotation	TIGR01725	NA	NA
UHGV-0200056_43	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0200056_43	Structural annotation	PF05657	NA	NA
UHGV-0200056_44	PHROG	phrog_25	head closure Hc1	connector
UHGV-0200056_44	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0200056_44	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0200056_44	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0200056_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0200056_45	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0200056_45	UniRef90	UniRef90_A0A8J6JAY9	Phage gp6-like head-tail connector protein	NA
UHGV-0200056_45	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-0200056_45	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0200056_45	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0200056_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-0200056_46	UniRef90	UniRef90_UPI00195B1FEC	phage major capsid protein	NA
UHGV-0200056_46	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0200056_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0200056_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0200056_46	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0200056_47	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0200056_47	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0200056_47	UniRef90	UniRef90_A0A644ZMQ3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0200056_47	eggNOG-mapper	557436.Lreu_1115	Belongs to the peptidase S14 family	NA
UHGV-0200056_47	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0200056_47	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0200056_47	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0200056_48	PHROG	phrog_12	portal protein	head and packaging
UHGV-0200056_48	UniRef90	UniRef90_A0A3D4EI33	Phage portal protein	NA
UHGV-0200056_48	eggNOG-mapper	1120971.AUCA01000066_gene593	Phage portal protein	NA
UHGV-0200056_48	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0200056_48	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0200056_48	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0200056_48	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0200056_50	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0200056_50	UniRef90	UniRef90_A0A3D4EH51	Terminase large subunit	NA
UHGV-0200056_50	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0200056_50	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0200056_50	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0200056_50	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0200056_50	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0200056_51	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0200056_51	UniRef90	UniRef90_UPI000C77CC02	P27 family phage terminase small subunit	NA
UHGV-0200056_51	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0200056_51	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0200056_51	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0200056	Yes	34,187 bps	60.30%	99.90%	0.9768
UHGV-0182550	No	37,533 bps	60.91%	99.90%	0.9736
UHGV-0180901	No	37,359 bps	60.75%	99.90%	0.9717