vOTU-009479

Overview

vOTU representative UHGV-0203482

No. of genomes 4

Genome length 39,347 bps

Completeness 96.74% (high-quality)

Host Oscillospiraceae

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-009479
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00005 › vGENUS-10996 › vSUBGEN-15149 › vOTU-009479
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae
Host range breadth	Family
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0203482
BioSample	SAMN00075026
Genome length	39,347 bps
CheckV completeness	96.74% (high-quality)
CheckV contamination	0.00%
CDS count	74
CDS density	89.59%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0203482_2	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0203482_4	PHROG	phrog_236	nucleotide kinase	other
UHGV-0203482_4	UniRef90	UniRef90_UPI001CA83796	NA	NA
UHGV-0203482_4	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0203482_4	Pfam	PF11753	NA	DUF3310
UHGV-0203482_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0203482_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0203482_5	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0203482_5	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0203482_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0203482_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0203482_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0203482_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0203482_6	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0203482_6	UniRef90	UniRef90_UPI001D05F697	terminase small subunit	NA
UHGV-0203482_6	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-0203482_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0203482_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0203482_6	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0203482_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0203482_7	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0203482_7	UniRef90	UniRef90_A0A4D7AZ70	PBSX family phage terminase large subunit	NA
UHGV-0203482_7	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0203482_7	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0203482_7	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0203482_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0203482_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0203482_7	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0203482_8	PHROG	phrog_64	portal protein	head and packaging
UHGV-0203482_8	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0203482_8	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0203482_8	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0203482_8	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0203482_9	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0203482_9	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0203482_9	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0203482_9	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0203482_9	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0203482_9	COG	COG2369	NA	NA
UHGV-0203482_9	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0203482_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0203482_10	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0203482_10	eggNOG-mapper	1443125.Z962_05620	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0203482_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0203482_11	Structural annotation	PF18152	NA	NA
UHGV-0203482_12	PHROG	phrog_1233	NA	unknown function
UHGV-0203482_12	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0203482_12	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0203482_13	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0203482_13	Structural annotation	PF06810	NA	NA
UHGV-0203482_14	PHROG	phrog_544	major head protein	head and packaging
UHGV-0203482_14	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0203482_14	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0203482_14	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0203482_14	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0203482_16	PHROG	phrog_17977	NA	unknown function
UHGV-0203482_16	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0203482_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0203482_17	PHROG	phrog_17405	head protein	head and packaging
UHGV-0203482_17	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0203482_17	Structural annotation	PF11367	NA	NA
UHGV-0203482_18	PHROG	phrog_885	major tail protein	tail
UHGV-0203482_18	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0203482_18	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0203482_18	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0203482_19	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0203482_21	PHROG	phrog_7115	NA	unknown function
UHGV-0203482_21	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0203482_21	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0203482_21	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0203482_21	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0203482_22	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0203482_22	UniRef90	UniRef90_A0A6N7SND2	Phage tail protein	NA
UHGV-0203482_22	eggNOG-mapper	411470.RUMGNA_02076	Phage tail tape measure protein, TP901 family	NA
UHGV-0203482_22	COG	COG5283	Phage-related tail protein	NA
UHGV-0203482_23	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0203482_24	PHROG	phrog_6616	tail protein	tail
UHGV-0203482_24	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0203482_24	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0203482_24	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0203482_25	UniRef90	UniRef90_UPI00195E70AD	tail fiber domain-containing protein	NA
UHGV-0203482_25	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0203482_25	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0203482_25	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0203482_27	PHROG	phrog_21962	tail protein	tail
UHGV-0203482_27	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0203482_27	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0203482_27	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0203482_28	PHROG	phrog_37900	NA	unknown function
UHGV-0203482_28	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-0203482_28	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0203482_28	Pfam	PF19789	NA	DUF6273
UHGV-0203482_28	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0203482_28	Structural annotation	PF19789	NA	NA
UHGV-0203482_30	PHROG	phrog_27545	NA	unknown function
UHGV-0203482_30	UniRef90	UniRef90_UPI0006826107	phage tail assembly chaperone	NA
UHGV-0203482_30	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0203482_30	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0203482_31	PHROG	phrog_4105	NA	unknown function
UHGV-0203482_33	PHROG	phrog_881	holin	lysis
UHGV-0203482_33	UniRef90	UniRef90_A0A133N4A6	Holin family protein	NA
UHGV-0203482_33	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0203482_33	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0203482_33	Structural annotation	PF16938	NA	NA
UHGV-0203482_34	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0203482_34	PHROG	phrog_6523	endolysin	lysis
UHGV-0203482_34	UniRef90	UniRef90_R5RXG6	Serine-type D-Ala-D-Ala carboxypeptidase	NA
UHGV-0203482_34	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0203482_34	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0203482_34	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0203482_34	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0203482_35	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0203482_35	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0203482_35	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0203482_36	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0203482_36	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0203482_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203482_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0203482_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0203482_38	Structural annotation	COG4451	NA	NA
UHGV-0203482_40	PHROG	phrog_3754	NA	unknown function
UHGV-0203482_40	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0203482_41	PHROG	phrog_21718	NA	unknown function
UHGV-0203482_41	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0203482_42	PHROG	phrog_22984	NA	unknown function
UHGV-0203482_43	PHROG	phrog_16490	NA	unknown function
UHGV-0203482_43	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0203482_45	PHROG	phrog_20016	NA	unknown function
UHGV-0203482_45	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0203482_45	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0203482_45	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0203482_46	Structural annotation	PF12510	NA	NA
UHGV-0203482_47	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0203482_48	KOfam	K14059	int; integrase	NA
UHGV-0203482_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0203482_48	UniRef90	UniRef90_UPI001EDE32BF	site-specific integrase	NA
UHGV-0203482_48	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0203482_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0203482_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0203482_48	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0203482_49	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0203482_49	eggNOG-mapper	537007.BLAHAN_06565	sequence-specific DNA binding	NA
UHGV-0203482_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203482_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0203482_49	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0203482_50	PHROG	phrog_301	secreted protein	other
UHGV-0203482_50	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0203482_50	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0203482_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203482_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0203482_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0203482_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0203482_54	UniRef90	UniRef90_N9Z4Q7	HTH cro/C1-type domain-containing protein	NA
UHGV-0203482_54	eggNOG-mapper	1341157.RF007C_00125	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0203482_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203482_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0203482_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0203482_55	PHROG	phrog_15946	NA	unknown function
UHGV-0203482_55	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0203482_56	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0203482_56	Structural annotation	TIGR01898, COG1604	NA	NA
UHGV-0203482_59	PHROG	phrog_22529	NA	unknown function
UHGV-0203482_59	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0203482_59	eggNOG-mapper	1298920.KI911353_gene568	3D domain	NA
UHGV-0203482_59	Pfam	PF06725	3D domain	3D
UHGV-0203482_59	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0203482_59	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0203482_61	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0203482_61	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-0203482_61	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0203482_61	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0203482_61	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0203482_61	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0203482_61	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0203482_62	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0203482_62	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0203482_62	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0203482_62	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0203482_62	Pfam	PF03837	RecT family	RecT
UHGV-0203482_62	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0203482_62	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0203482_62	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0203482_63	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0203482_63	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0203482_63	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0203482_63	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0203482_63	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0203482_63	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0203482_63	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0203482_63	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0203482_63	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0203482_64	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0203482_64	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0203482_64	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0203482_64	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0203482_64	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0203482_64	Structural annotation	PF14297	NA	NA
UHGV-0203482_65	PHROG	phrog_9804	NA	unknown function
UHGV-0203482_65	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0203482_65	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0203482_65	Structural annotation	PF11417	NA	NA
UHGV-0203482_66	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0203482_66	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0203482_66	UniRef90	UniRef90_A0A7M2RKZ5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0203482_66	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-0203482_66	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0203482_66	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0203482_66	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0203482_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203482_68	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0203482_68	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0203482_69	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203482_69	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0203482_69	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0203482_70	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0203482_70	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0203482_70	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0203482_70	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0203482_70	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0203482_71	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0203482_71	UniRef90	UniRef90_UPI000F065B6D	adenine methyltransferase	NA
UHGV-0203482_71	eggNOG-mapper	1450694.BTS2_0497	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0203482_71	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0203482_71	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0203482_71	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0203482_72	PHROG	phrog_27610	NA	unknown function
UHGV-0203482_73	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0203482_73	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0203482	Yes	39,347 bps	54.13%	96.74%	0.9816
UHGV-0285797	No	40,518 bps	54.31%	99.22%	0.9817
UHGV-0271662	No	40,436 bps	54.26%	99.03%	0.9819
UHGV-1422128	No	35,714 bps	53.98%	88.22%	0.9818