vOTU-010277

Overview

vOTU representative UHGV-1532066

No. of genomes 7

Genome length 39,720 bps

Completeness 97.48% (high-quality)

Host Gemmiger

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-010277
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00079 › vGENUS-00223 › vSUBGEN-19825 › vOTU-010277
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Gemmiger
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1532066
BioSample	SAMEA3665291
Genome length	39,720 bps
CheckV completeness	97.48% (high-quality)
CheckV contamination	0.00%
CDS count	60
CDS density	88.96%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1532066_1	KOfam	K14059	int; integrase	NA
UHGV-1532066_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1532066_1	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-1532066_1	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-1532066_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1532066_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1532066_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1532066_2	eggNOG-mapper	1280664.AUIX01000005_gene2823	NA	NA
UHGV-1532066_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1532066_4	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-1532066_4	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-1532066_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1532066_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1532066_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1532066_5	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-1532066_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1532066_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1532066_5	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-1532066_6	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-1532066_6	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1532066_8	PHROG	phrog_7964	NA	unknown function
UHGV-1532066_8	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-1532066_8	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1532066_8	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-1532066_8	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1532066_8	Structural annotation	NF040481, COG2171	NA	NA
UHGV-1532066_11	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-1532066_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1532066_12	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-1532066_12	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1532066_12	Structural annotation	PF05772	NA	NA
UHGV-1532066_13	PHROG	phrog_7566	NA	unknown function
UHGV-1532066_13	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-1532066_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1532066_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1532066_14	UniRef90	UniRef90_UPI00187432A3	single-stranded DNA-binding protein	NA
UHGV-1532066_14	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-1532066_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1532066_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1532066_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1532066_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1532066_14	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1532066_15	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1532066_15	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1532066_16	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1532066_16	eggNOG-mapper	447909.A6M985_9VIRU	calcium ion binding	NA
UHGV-1532066_16	Pfam	PF19808	NA	DUF6291
UHGV-1532066_16	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1532066_16	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1532066_16	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-1532066_17	PHROG	phrog_9804	NA	unknown function
UHGV-1532066_17	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1532066_17	Structural annotation	PF11417	NA	NA
UHGV-1532066_21	PHROG	phrog_9958	NA	unknown function
UHGV-1532066_21	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-1532066_21	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-1532066_21	Structural annotation	PF19789	NA	NA
UHGV-1532066_23	PHROG	phrog_111	DNA methyltransferase	other
UHGV-1532066_23	UniRef90	UniRef90_A0A1Q6T6T6	Adenine methyltransferase	NA
UHGV-1532066_23	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-1532066_23	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-1532066_23	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-1532066_23	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-1532066_25	PHROG	phrog_11237	NA	unknown function
UHGV-1532066_25	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-1532066_25	Structural annotation	NF009167	NA	NA
UHGV-1532066_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1532066_26	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1532066_26	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-1532066_26	eggNOG-mapper	226185.EF_2114	DNA methylase	NA
UHGV-1532066_26	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1532066_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1532066_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1532066_26	COG	COG0863	DNA modification methylase	NA
UHGV-1532066_26	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1532066_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1532066_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1532066_28	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-1532066_28	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-1532066_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1532066_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1532066_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1532066_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1532066_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1532066_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-1532066_29	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1532066_29	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1532066_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1532066_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1532066_30	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1532066_30	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-1532066_30	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1532066_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1532066_30	COG	COG2369	NA	NA
UHGV-1532066_30	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1532066_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1532066_31	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-1532066_31	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-1532066_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1532066_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1532066_31	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1532066_32	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1532066_32	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-1532066_32	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1532066_33	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1532066_33	Structural annotation	PF06810	NA	NA
UHGV-1532066_34	PHROG	phrog_544	major head protein	head and packaging
UHGV-1532066_34	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1532066_34	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1532066_34	Structural annotation	PF06673, PF13629, MF_04119, TIGR04387, NF005261, COG4653	NA	NA
UHGV-1532066_36	PHROG	phrog_17977	NA	unknown function
UHGV-1532066_36	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-1532066_36	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1532066_37	Structural annotation	PF11367	NA	NA
UHGV-1532066_38	PHROG	phrog_885	major tail protein	tail
UHGV-1532066_38	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1532066_38	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1532066_38	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1532066_39	PHROG	phrog_18646	NA	unknown function
UHGV-1532066_41	PHROG	phrog_20920	NA	unknown function
UHGV-1532066_41	eggNOG-mapper	1121335.Clst_0399	NA	NA
UHGV-1532066_41	Structural annotation	PF16674	NA	NA
UHGV-1532066_42	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1532066_42	UniRef90	UniRef90_A0A0D0SGC8	Phage minor tail protein	NA
UHGV-1532066_42	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-1532066_42	COG	COG5412	Phage-related protein	NA
UHGV-1532066_42	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-1532066_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1532066_43	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-1532066_43	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-1532066_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-1532066_43	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1532066_44	PHROG	phrog_538	minor tail protein	tail
UHGV-1532066_44	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1532066_44	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-1532066_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1532066_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1532066_45	PHROG	phrog_9534	head protein	head and packaging
UHGV-1532066_45	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-1532066_45	Structural annotation	PF18463, PF20747	NA	NA
UHGV-1532066_48	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-1532066_48	PHROG	phrog_7698	endolysin	lysis
UHGV-1532066_48	UniRef90	UniRef90_A0A1C5V282	Exo-glucosaminidase lytG	NA
UHGV-1532066_48	eggNOG-mapper	877414.ATWA01000019_gene2055	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-1532066_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1532066_48	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1532066_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1532066_48	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-1532066_49	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-1532066_49	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-1532066_50	PHROG	phrog_13256	NA	unknown function
UHGV-1532066_50	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-1532066_51	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-1532066_51	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1532066_51	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1532066_52	PHROG	phrog_3754	NA	unknown function
UHGV-1532066_52	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1532066_53	PHROG	phrog_21718	NA	unknown function
UHGV-1532066_53	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1532066_54	PHROG	phrog_22984	NA	unknown function
UHGV-1532066_55	PHROG	phrog_16490	NA	unknown function
UHGV-1532066_55	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1532066_56	PHROG	phrog_20016	NA	unknown function
UHGV-1532066_56	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1532066_56	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1532066_56	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1532066_57	Structural annotation	PF12510	NA	NA
UHGV-1532066_58	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1532066_60	UniRef90	UniRef90_A0A1T4XQT6	TraX protein	NA
UHGV-1532066_60	eggNOG-mapper	622312.ROSEINA2194_03263	NA	NA
UHGV-1532066_60	Pfam	PF05857	TraX protein	TraX
UHGV-1532066_60	Structural annotation	PF05857, MF_01949, NF010454	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1532066	Yes	39,720 bps	51.78%	97.48%	0.9786
UHGV-1556396	No	39,348 bps	51.73%	96.57%	0.9763
UHGV-1542664	No	38,445 bps	51.62%	94.35%	0.9824
UHGV-1426155	No	34,126 bps	52.24%	83.71%	0.9806
UHGV-1530394	No	33,260 bps	52.12%	81.59%	0.9812
UHGV-1764718	No	15,213 bps	53.30%	37.33%	0.9823
UHGV-1665971	No	11,149 bps	51.14%	26.82%	0.9759