vOTU-010326

Overview

No. of genomes 11

Genome length 33,971 bps

Completeness 99.90% (high-quality)

Host UBA11774 sp003507655

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-010326
Number of genomes	11
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-02278 › vGENUS-07882 › vSUBGEN-06791 › vOTU-010326
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › UBA11774 › UBA11774 sp003507655
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0053292
BioSample	SAMEA2338759
Genome length	33,971 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	60
CDS density	91.91%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0053292_3	PHROG	phrog_874	NA	unknown function
UHGV-0053292_3	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0053292_3	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0053292_3	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0053292_5	PHROG	phrog_20593	NA	unknown function
UHGV-0053292_6	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0053292_6	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0053292_6	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0053292_6	Structural annotation	PF14354	NA	NA
UHGV-0053292_7	UniRef90	UniRef90_UPI001C039694	Lar family restriction alleviation protein	NA
UHGV-0053292_7	eggNOG-mapper	1235800.C819_02246	NA	NA
UHGV-0053292_7	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0053292_8	PHROG	phrog_8684	NA	unknown function
UHGV-0053292_8	UniRef90	UniRef90_A0A3R6DZN9	YopX domain-containing protein	NA
UHGV-0053292_8	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0053292_8	Pfam	PF09643	YopX protein	YopX
UHGV-0053292_8	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0053292_8	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0053292_9	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0053292_9	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0053292_12	PHROG	phrog_2600	NA	unknown function
UHGV-0053292_12	eggNOG-mapper	1178540.BA70_18565	NA	NA
UHGV-0053292_13	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0053292_13	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0053292_13	eggNOG-mapper	1121115.AXVN01000007_gene3542	C-5 cytosine-specific DNA methylase	NA
UHGV-0053292_13	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0053292_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0053292_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0053292_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0053292_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0053292_14	UniRef90	UniRef90_A0A1Q6KI63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0053292_14	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0053292_14	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0053292_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0053292_14	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0053292_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0053292_14	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0053292_17	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0053292_17	UniRef90	UniRef90_A0A174JL72	NA	NA
UHGV-0053292_17	eggNOG-mapper	1232453.BAIF02000057_gene1144	NA	NA
UHGV-0053292_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0053292_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0053292_17	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0053292_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0053292_18	UniRef90	UniRef90_R9KSR0	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0053292_18	eggNOG-mapper	1235793.C809_01914	sigma factor activity	NA
UHGV-0053292_18	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0053292_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0053292_18	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0053292_29	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0053292_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0053292_29	UniRef90	UniRef90_A0A3R6JTC8	XRE family transcriptional regulator	NA
UHGV-0053292_29	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0053292_29	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0053292_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0053292_29	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0053292_31	UniRef90	UniRef90_UPI001D047288	Ltp family lipoprotein	NA
UHGV-0053292_33	UniRef90	UniRef90_R7QUM8	DNA-binding helix-turn-helix protein	NA
UHGV-0053292_33	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0053292_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0053292_33	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0053292_35	PHROG	phrog_13890	NA	unknown function
UHGV-0053292_36	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0053292_36	PHROG	phrog_2649	endolysin	lysis
UHGV-0053292_36	UniRef90	UniRef90_R9KCW9	Peptidase_M15_4 domain-containing protein	NA
UHGV-0053292_36	eggNOG-mapper	397290.C810_03258	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0053292_36	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0053292_36	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0053292_36	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0053292_37	PHROG	phrog_443	holin	lysis
UHGV-0053292_37	UniRef90	UniRef90_A0A1I0HNR6	Holin, r1t family	NA
UHGV-0053292_37	eggNOG-mapper	397288.C806_00114	Putative lactococcus lactis phage r1t holin	NA
UHGV-0053292_37	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0053292_37	Structural annotation	PF16945	NA	NA
UHGV-0053292_38	PHROG	phrog_4105	NA	unknown function
UHGV-0053292_38	eggNOG-mapper	1235790.C805_00613	NA	NA
UHGV-0053292_39	UniRef90	UniRef90_A0A011UAK9	Antitoxin	NA
UHGV-0053292_40	Structural annotation	PF10618, MF_01370	NA	NA
UHGV-0053292_41	PHROG	phrog_9994	NA	unknown function
UHGV-0053292_41	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0053292_41	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0053292_41	Structural annotation	PF20747	NA	NA
UHGV-0053292_42	PHROG	phrog_538	minor tail protein	tail
UHGV-0053292_42	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0053292_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0053292_42	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0053292_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0053292_43	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0053292_43	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-0053292_43	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0053292_44	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0053292_44	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0053292_44	UniRef90	UniRef90_A0A6N7Y0D1	PhageMin_Tail domain-containing protein	NA
UHGV-0053292_44	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-0053292_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0053292_44	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0053292_44	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0053292_45	eggNOG-mapper	1121866.AUGK01000006_gene886	NA	NA
UHGV-0053292_46	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0053292_47	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0053292_47	eggNOG-mapper	1121866.AUGK01000006_gene884	NA	NA
UHGV-0053292_47	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0053292_48	PHROG	phrog_5509	neck protein	connector
UHGV-0053292_48	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-0053292_48	eggNOG-mapper	1408823.AXUS01000025_gene2627	NA	NA
UHGV-0053292_48	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0053292_49	eggNOG-mapper	1121866.AUGK01000006_gene883	NA	NA
UHGV-0053292_49	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0053292_50	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0053292_50	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0053292_50	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-0053292_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0053292_51	PHROG	phrog_749	NA	unknown function
UHGV-0053292_51	UniRef90	UniRef90_W0FM58	Gp6 protein	NA
UHGV-0053292_51	eggNOG-mapper	1121866.AUGK01000006_gene881	NA	NA
UHGV-0053292_52	PHROG	phrog_10	major head protein	head and packaging
UHGV-0053292_52	UniRef90	UniRef90_A0A173S099	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0053292_52	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0053292_52	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0053292_52	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0053292_52	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0053292_52	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0053292_53	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0053292_53	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0053292_53	UniRef90	UniRef90_A0A7U9NK92	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0053292_53	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0053292_53	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0053292_53	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0053292_53	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0053292_54	PHROG	phrog_12	portal protein	head and packaging
UHGV-0053292_54	UniRef90	UniRef90_A0A173RYU7	Phage portal protein, HK97 family	NA
UHGV-0053292_54	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0053292_54	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0053292_54	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0053292_54	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0053292_54	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0053292_55	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0053292_55	UniRef90	UniRef90_A0A412EM51	Terminase large subunit	NA
UHGV-0053292_55	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0053292_55	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0053292_55	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0053292_55	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0053292_55	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0053292_56	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0053292_56	UniRef90	UniRef90_UPI001D0732BF	P27 family phage terminase small subunit	NA
UHGV-0053292_56	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0053292_56	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0053292_56	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0053292_57	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0053292_57	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0053292_57	UniRef90	UniRef90_A0A412EM28	HNH endonuclease	NA
UHGV-0053292_57	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0053292_57	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0053292_58	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0053292_58	PHROG	phrog_216	integrase	integration and excision
UHGV-0053292_58	UniRef90	UniRef90_A0A1Q9J4X9	Integrase	NA
UHGV-0053292_58	eggNOG-mapper	1235793.C809_02656	PFAM Phage integrase family	NA
UHGV-0053292_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0053292_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0053292_58	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0053292_60	KOfam	K03090	sigB; RNA polymerase sigma-B factor	NA
UHGV-0053292_60	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0053292_60	UniRef90	UniRef90_A0A354D1W6	RNA polymerase sigma factor	NA
UHGV-0053292_60	eggNOG-mapper	397290.C810_02229	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0053292_60	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-0053292_60	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0053292_60	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0053292_60	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0053292_60	Structural annotation	PF04545, PF04539, MF_00962, NF006071, COG1191	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0053292	Yes	33,971 bps	41.31%	99.90%	0.9697
UHGV-0184368	No	32,049 bps	41.01%	95.12%	0.9698
UHGV-0083455	No	31,764 bps	41.09%	94.27%	0.9684
UHGV-0084724	No	31,002 bps	41.49%	92.01%	0.9673
UHGV-1400115	No	29,519 bps	40.91%	87.61%	0.9742
UHGV-0084537	No	27,524 bps	41.69%	81.69%	0.9722
UHGV-1543605	No	27,074 bps	41.60%	80.35%	0.9700
UHGV-0145987	No	14,663 bps	41.59%	43.52%	0.9661
UHGV-2046275	No	13,703 bps	42.22%	40.67%	0.9823
UHGV-0090402	No	12,602 bps	41.30%	37.40%	0.9655
UHGV-2121136	No	12,549 bps	40.96%	37.25%	0.9696