vOTU-010484

Overview

vOTU representative UHGV-2095440

No. of genomes 3

Genome length 34,124 bps

Completeness 99.90% (high-quality)

Host Collinsella

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-010484
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 › vSUBFAM-00148 › vGENUS-00191 › vSUBGEN-00319 › vOTU-010484
Host taxonomy	Bacteria › Actinobacteriota › Coriobacteriia › Coriobacteriales › Coriobacteriaceae › Collinsella
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2095440
BioSample	SAMN05971729
Genome length	34,124 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	48
CDS density	91.38%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2095440_1	KOfam	K04070	pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]	NA
UHGV-2095440_1	PHROG	phrog_2076	QueE-like radical SAM domain	moron, auxiliary metabolic gene and host takeover
UHGV-2095440_1	UniRef90	UniRef90_A0A096LML7	Radical SAM core domain-containing protein	NA
UHGV-2095440_1	eggNOG-mapper	742722.HMPREF9463_00690	Radical SAM domain protein	NA
UHGV-2095440_1	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2095440_1	COG	COG1313	Radical SAM superfamily enzyme PflX	NA
UHGV-2095440_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2095440_2	PHROG	phrog_95	integrase	integration and excision
UHGV-2095440_2	UniRef90	UniRef90_UPI0013141176	recombinase family protein	NA
UHGV-2095440_2	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-2095440_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2095440_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2095440_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2095440_2	Structural annotation	PF00239, NF041201, COG2452	NA	NA
UHGV-2095440_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2095440_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2095440_3	UniRef90	UniRef90_A0A414EUF5	XRE family transcriptional regulator	NA
UHGV-2095440_3	eggNOG-mapper	1124991.MU9_2808	Helix-turn-helix XRE-family like proteins	NA
UHGV-2095440_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2095440_3	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2095440_3	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2095440_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2095440_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2095440_4	UniRef90	UniRef90_A0A414ETV6	XRE family transcriptional regulator	NA
UHGV-2095440_4	eggNOG-mapper	469609.HMPREF0847_01324	Helix-turn-helix XRE-family like proteins	NA
UHGV-2095440_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2095440_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2095440_4	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-2095440_6	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-2095440_8	PHROG	phrog_24189	NA	unknown function
UHGV-2095440_8	UniRef90	UniRef90_A0A414EU02	NA	NA
UHGV-2095440_8	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-2095440_8	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2095440_8	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-2095440_10	PHROG	phrog_3205	NA	unknown function
UHGV-2095440_10	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-2095440_10	eggNOG-mapper	1158602.I590_02965	NA	NA
UHGV-2095440_11	PHROG	phrog_1689	nucleotide kinase	other
UHGV-2095440_11	UniRef90	UniRef90_A0A414EU32	NA	NA
UHGV-2095440_11	eggNOG-mapper	889876.E2GLY2_9CAUD	NA	NA
UHGV-2095440_11	Pfam	PF11753	NA	DUF3310
UHGV-2095440_11	Structural annotation	PF11753	NA	NA
UHGV-2095440_16	KOfam	K14059	int; integrase	NA
UHGV-2095440_16	PHROG	phrog_1	integrase	integration and excision
UHGV-2095440_16	UniRef90	UniRef90_A0A414ETY5	Site-specific integrase	NA
UHGV-2095440_16	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-2095440_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2095440_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2095440_16	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2095440_17	UniRef90	UniRef90_A0A414EU10	Integration host factor	NA
UHGV-2095440_17	eggNOG-mapper	471855.Shel_11900	integration host factor	NA
UHGV-2095440_17	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-2095440_17	COG	COG0099	Ribosomal protein S13	NA
UHGV-2095440_17	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-2095440_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2095440_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2095440_19	UniRef90	UniRef90_A0A414EU69	Single-stranded DNA-binding protein	NA
UHGV-2095440_19	eggNOG-mapper	1034345.CAEM01000002_gene1212	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2095440_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2095440_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2095440_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2095440_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2095440_19	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-2095440_20	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2095440_20	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2095440_20	UniRef90	UniRef90_A0A414EU11	dUTP diphosphatase	NA
UHGV-2095440_20	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-2095440_20	Pfam	PF00692	dUTPase	dUTPase
UHGV-2095440_20	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-2095440_20	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2095440_20	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-2095440_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2095440_21	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-2095440_21	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-2095440_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2095440_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2095440_22	UniRef90	UniRef90_A0A4Q2K147	HNH endonuclease	NA
UHGV-2095440_22	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-2095440_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2095440_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2095440_23	PHROG	phrog_1066	NA	unknown function
UHGV-2095440_23	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-2095440_23	Structural annotation	TIGR01558	NA	NA
UHGV-2095440_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2095440_24	UniRef90	UniRef90_A0A374TTV6	Terminase large subunit	NA
UHGV-2095440_24	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-2095440_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2095440_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2095440_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2095440_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2095440_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-2095440_25	UniRef90	UniRef90_A0A4Q2K609	Phage portal protein	NA
UHGV-2095440_25	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-2095440_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2095440_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2095440_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2095440_26	KOfam	K06904	NA	NA
UHGV-2095440_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2095440_26	UniRef90	UniRef90_A0A4Q2K446	HK97 family phage prohead protease	NA
UHGV-2095440_26	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-2095440_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2095440_26	COG	COG3740	Phage head maturation protease	NA
UHGV-2095440_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2095440_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-2095440_27	UniRef90	UniRef90_A0A1Y4GBR5	Phage major capsid protein	NA
UHGV-2095440_27	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-2095440_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2095440_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2095440_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2095440_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2095440_28	PHROG	phrog_5223	neck protein	connector
UHGV-2095440_28	UniRef90	UniRef90_A0A414ETY6	DNA-packaging protein	NA
UHGV-2095440_28	eggNOG-mapper	1341151.ASZU01000004_gene259	NA	NA
UHGV-2095440_29	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2095440_29	UniRef90	UniRef90_B6GDI0	Putative phage head-tail adaptor	NA
UHGV-2095440_29	eggNOG-mapper	365048.Q0H236_9CAUD	NA	NA
UHGV-2095440_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2095440_30	UniRef90	UniRef90_A0A3T2E4T9	HK97 gp10 family phage protein	NA
UHGV-2095440_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2095440_31	eggNOG-mapper	411473.RUMCAL_01153	NA	NA
UHGV-2095440_31	Structural annotation	PF05657, TIGR04412	NA	NA
UHGV-2095440_32	PHROG	phrog_88	major tail protein	tail
UHGV-2095440_32	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-2095440_32	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-2095440_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2095440_32	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2095440_33	Structural annotation	PF12363	NA	NA
UHGV-2095440_35	PHROG	phrog_23464	NA	unknown function
UHGV-2095440_35	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-2095440_35	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-2095440_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2095440_35	Structural annotation	COG5280	NA	NA
UHGV-2095440_36	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2095440_36	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-2095440_36	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-2095440_36	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2095440_36	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2095440_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-2095440_36	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2095440_37	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-2095440_37	UniRef90	UniRef90_A0A414EU31	Prophage_tail domain-containing protein	NA
UHGV-2095440_37	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-2095440_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2095440_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2095440_37	COG	COG4926	Phage-related protein	NA
UHGV-2095440_37	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-2095440_38	eggNOG-mapper	445975.COLSTE_02152	NA	NA
UHGV-2095440_39	PHROG	phrog_19280	NA	unknown function
UHGV-2095440_39	UniRef90	UniRef90_A0A414EU89	NA	NA
UHGV-2095440_39	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-2095440_39	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2095440_39	Structural annotation	PF10651	NA	NA
UHGV-2095440_40	PHROG	phrog_17147	NA	unknown function
UHGV-2095440_40	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-2095440_40	eggNOG-mapper	1680.BADO_1222	NA	NA
UHGV-2095440_40	Structural annotation	PF21430	NA	NA
UHGV-2095440_41	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2095440_41	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2095440_41	UniRef90	UniRef90_A0A414ETW4	Reverse transcriptase domain-containing protein	NA
UHGV-2095440_41	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2095440_41	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2095440_41	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2095440_41	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2095440_41	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-2095440_43	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2095440_43	Structural annotation	NF040910	NA	NA
UHGV-2095440_44	PHROG	phrog_199	holin	lysis
UHGV-2095440_44	UniRef90	UniRef90_UPI0011067090	phage holin family protein	NA
UHGV-2095440_44	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-2095440_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2095440_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2095440_44	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2095440_45	UniRef90	UniRef90_A0A414EUJ7	Peptidase_C39_2 domain-containing protein	NA
UHGV-2095440_45	eggNOG-mapper	1232447.BAHW02000027_gene1859	Papain-like cysteine protease AvrRpt2	NA
UHGV-2095440_45	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-2095440_45	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-2095440_45	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-2095440_46	KOfam	K07273	acm; lysozyme	NA
UHGV-2095440_46	PHROG	phrog_291	endolysin	lysis
UHGV-2095440_46	UniRef90	UniRef90_A0A1Y4GDT9	LysM domain-containing protein	NA
UHGV-2095440_46	eggNOG-mapper	445975.COLSTE_02142	CW_7 repeat	NA
UHGV-2095440_46	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2095440_46	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2095440_46	COG	COG1388	LysM repeat	NA
UHGV-2095440_46	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2095440_48	eggNOG-mapper	742742.HMPREF9452_01675	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2095440	Yes	34,124 bps	56.68%	99.90%	0.9734
UHGV-0148231	No	34,251 bps	56.63%	99.90%	0.9707
UHGV-2087703	No	34,124 bps	56.68%	99.90%	0.9734