vOTU-011285

Overview

vOTU representative UHGV-0190817

No. of genomes 3

Genome length 40,750 bps

Completeness 98.86% (high-quality)

Host Veillonella A seminalis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-011285
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 › vSUBFAM-03949 › vGENUS-06281 › vSUBGEN-04245 › vOTU-011285
Host taxonomy	Bacteria › Firmicutes C › Negativicutes › Veillonellales › Veillonellaceae › Veillonella A › Veillonella A seminalis
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0190817
BioSample	SAMEA2579944
Genome length	40,750 bps
CheckV completeness	98.86% (high-quality)
CheckV contamination	0.00%
CDS count	48
CDS density	92.43%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190817_1	KOfam	K18189	TACO1; translational activator of cytochrome c oxidase 1	NA
UHGV-0190817_1	PHROG	phrog_34724	NA	unknown function
UHGV-0190817_1	UniRef90	UniRef90_A0A380NGF7	Probable transcriptional regulatory protein NCTC12020_00187	NA
UHGV-0190817_1	eggNOG-mapper	883156.HMPREF9282_00011	transcriptional regulatory protein	NA
UHGV-0190817_1	Pfam	PF20772	TACO1/YebC protein N-terminal domain	TACO1_YebC_N
UHGV-0190817_1	Pfam	PF01709	TACO1/YebC second and third domain	Transcrip_reg
UHGV-0190817_1	NCBIFam	NF001030.0	YebC/PmpR family DNA-binding transcriptional regulator	NA
UHGV-0190817_1	COG	COG0217	Transcriptional and/or translational regulatory protein YebC/TACO1	NA
UHGV-0190817_1	HAMAP	MF_00693	Probable transcriptional regulatory protein YebC [yebC]	NA
UHGV-0190817_2	KOfam	K14059	int; integrase	NA
UHGV-0190817_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0190817_2	UniRef90	UniRef90_A0A0J6WPJ6	Tyr recombinase domain-containing protein	NA
UHGV-0190817_2	eggNOG-mapper	1401067.HMPREF0872_06920	Belongs to the 'phage' integrase family	NA
UHGV-0190817_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190817_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190817_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0190817_3	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0190817_3	UniRef90	UniRef90_UPI000F8C8A88	Abi family protein	NA
UHGV-0190817_3	eggNOG-mapper	1122173.AXVL01000037_gene1364	Abi-like protein	NA
UHGV-0190817_3	PADLOC	AbiD	AbiD	Abi
UHGV-0190817_3	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0190817_3	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0190817_3	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0190817_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0190817_6	PHROG	phrog_20936	NA	unknown function
UHGV-0190817_6	UniRef90	UniRef90_UPI0013E038FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0190817_6	eggNOG-mapper	1321782.HMPREF1986_02242	NA	NA
UHGV-0190817_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0190817_6	Structural annotation	PF06114	NA	NA
UHGV-0190817_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190817_7	UniRef90	UniRef90_UPI0019620C80	helix-turn-helix domain-containing protein	NA
UHGV-0190817_7	eggNOG-mapper	861450.HMPREF0080_02022	Helix-turn-helix XRE-family like proteins	NA
UHGV-0190817_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190817_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0190817_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0190817_8	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0190817_8	UniRef90	UniRef90_UPI001961971F	helix-turn-helix domain-containing protein	NA
UHGV-0190817_8	eggNOG-mapper	565664.EFXG_02685	Helix-turn-helix XRE-family like proteins	NA
UHGV-0190817_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0190817_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190817_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0190817_9	PHROG	phrog_6058	NA	unknown function
UHGV-0190817_9	UniRef90	UniRef90_A0A0J6ZJX1	HTH_17 domain-containing protein	NA
UHGV-0190817_9	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0190817_11	PHROG	phrog_14088	NA	unknown function
UHGV-0190817_11	eggNOG-mapper	642492.Clole_1841	NA	NA
UHGV-0190817_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190817_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0190817_14	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0190817_14	eggNOG-mapper	883156.HMPREF9282_01224	NA	NA
UHGV-0190817_14	Structural annotation	PF11726	NA	NA
UHGV-0190817_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0190817_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0190817_15	UniRef90	UniRef90_UPI00098A2438	single-stranded DNA-binding protein	NA
UHGV-0190817_15	eggNOG-mapper	1150600.ADIARSV_2092	Single-stranded DNA-binding protein	NA
UHGV-0190817_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190817_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0190817_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0190817_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0190817_15	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0190817_16	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0190817_16	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0190817_16	UniRef90	UniRef90_UPI000F8D3795	Lar family restriction alleviation protein	NA
UHGV-0190817_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0190817_16	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0190817_16	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0190817_16	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0190817_18	UniRef90	UniRef90_UPI000486B6FD	HNH endonuclease	NA
UHGV-0190817_18	eggNOG-mapper	1123489.AUAN01000010_gene369	endonuclease activity	NA
UHGV-0190817_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0190817_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0190817_18	Structural annotation	COG1403	NA	NA
UHGV-0190817_19	PHROG	phrog_29533	NA	unknown function
UHGV-0190817_20	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0190817_20	UniRef90	UniRef90_A0A2S7ZCM0	NA	NA
UHGV-0190817_20	eggNOG-mapper	883156.HMPREF9282_01229	NA	NA
UHGV-0190817_20	Pfam	PF14359	NA	DUF4406
UHGV-0190817_20	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0190817_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0190817_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0190817_21	UniRef90	UniRef90_A0A6N3AK63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0190817_21	eggNOG-mapper	864563.HMPREF9166_0583	C-5 cytosine-specific DNA methylase	NA
UHGV-0190817_21	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0190817_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0190817_21	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0190817_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0190817_21	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0190817_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0190817_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0190817_28	UniRef90	UniRef90_UPI000F8D1900	terminase small subunit	NA
UHGV-0190817_28	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-0190817_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0190817_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0190817_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190817_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0190817_29	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0190817_29	eggNOG-mapper	1401067.HMPREF0872_06820	Terminase-like family	NA
UHGV-0190817_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0190817_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0190817_29	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0190817_31	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0190817_31	UniRef90	UniRef90_UPI000F8DD2F0	portal protein	NA
UHGV-0190817_31	eggNOG-mapper	1401067.HMPREF0872_06810	Bacteriophage head to tail connecting protein	NA
UHGV-0190817_31	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0190817_31	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0190817_32	PHROG	phrog_528	NA	unknown function
UHGV-0190817_32	UniRef90	UniRef90_A0A8E8TUT9	Endopeptidase	NA
UHGV-0190817_32	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0190817_33	PHROG	phrog_458	protease	other
UHGV-0190817_33	eggNOG-mapper	1401067.HMPREF0872_06800	NA	NA
UHGV-0190817_34	PHROG	phrog_212	major head protein	head and packaging
UHGV-0190817_34	UniRef90	UniRef90_A0A239Z8I8	Phage capsid family	NA
UHGV-0190817_34	eggNOG-mapper	699218.HMPREF0889_0284	NA	NA
UHGV-0190817_34	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0190817_34	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0190817_35	Structural annotation	PF21190	NA	NA
UHGV-0190817_36	PHROG	phrog_394	tail protein	tail
UHGV-0190817_36	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-0190817_36	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-0190817_36	Structural annotation	PF17212	NA	NA
UHGV-0190817_37	PHROG	phrog_376	tail protein	tail
UHGV-0190817_37	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0190817_37	eggNOG-mapper	1401067.HMPREF0872_06775	NA	NA
UHGV-0190817_37	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0190817_38	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0190817_38	UniRef90	UniRef90_UPI0013DF7451	NA	NA
UHGV-0190817_38	eggNOG-mapper	1122963.AUHB01000020_gene2269	NA	NA
UHGV-0190817_38	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0190817_38	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0190817_39	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0190817_39	eggNOG-mapper	1401067.HMPREF0872_06765	NA	NA
UHGV-0190817_39	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-0190817_40	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0190817_40	PHROG	phrog_329	minor tail protein	tail
UHGV-0190817_40	UniRef90	UniRef90_A0A096AJQ8	NlpC/P60 domain-containing protein	NA
UHGV-0190817_40	eggNOG-mapper	1401067.HMPREF0872_06760	NA	NA
UHGV-0190817_40	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0190817_40	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0190817_41	PHROG	phrog_9880	NA	unknown function
UHGV-0190817_41	UniRef90	UniRef90_UPI000F8E604F	RapH N-terminal domain-containing protein	NA
UHGV-0190817_41	eggNOG-mapper	699218.HMPREF0889_0277	NA	NA
UHGV-0190817_41	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0190817_41	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0190817_42	eggNOG-mapper	1401067.HMPREF0872_07835	NA	NA
UHGV-0190817_42	Structural annotation	PF03906	NA	NA
UHGV-0190817_43	eggNOG-mapper	556269.ACDQ01000006_gene1645	NA	NA
UHGV-0190817_45	PHROG	phrog_27828	NA	unknown function
UHGV-0190817_45	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0190817_45	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0190817_46	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0190817_46	PHROG	phrog_435	endolysin	lysis
UHGV-0190817_46	UniRef90	UniRef90_C9LUA6	Cell wall hydrolase/autolysin	NA
UHGV-0190817_46	eggNOG-mapper	546271.Selsp_1309	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0190817_46	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0190817_46	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0190817_46	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0190817_48	UniRef90	UniRef90_D2RM95	Transcriptional regulator, SARP family	NA
UHGV-0190817_48	eggNOG-mapper	883156.HMPREF9282_00010	Transcriptional activator	NA
UHGV-0190817_48	Pfam	PF03704	Bacterial transcriptional activator domain	BTAD
UHGV-0190817_48	COG	COG0457	Tetratricopeptide (TPR) repeat	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0190817	Yes	40,750 bps	36.99%	98.86%	0.9716
UHGV-0077105	No	37,801 bps	36.92%	91.71%	0.9758
UHGV-1635136	No	15,715 bps	38.49%	37.23%	0.9642