vOTU-011337

Overview

vOTU representative UHGV-0192737

No. of genomes 5

Genome length 36,461 bps

Completeness 97.56% (high-quality)

Host Ruminiclostridium E siraeum

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-011337
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00307 › vGENUS-01261 › vSUBGEN-18499 › vOTU-011337
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminiclostridium E › Ruminiclostridium E siraeum
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0192737
BioSample	SAMN06164742
Genome length	36,461 bps
CheckV completeness	97.56% (high-quality)
CheckV contamination	0.00%
CDS count	49
CDS density	94.62%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0192737_1	KOfam	K14059	int; integrase	NA
UHGV-0192737_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0192737_1	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0192737_1	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0192737_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0192737_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0192737_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0192737_2	eggNOG-mapper	755731.Clo1100_1139	NA	NA
UHGV-0192737_3	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0192737_3	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0192737_3	UniRef90	UniRef90_D4JVL7	Exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0192737_3	eggNOG-mapper	877424.ATWC01000001_gene2107	EXOIII	NA
UHGV-0192737_3	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0192737_3	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0192737_3	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0192737_3	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0192737_3	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0192737_3	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847, COG5275	NA	NA
UHGV-0192737_4	PHROG	phrog_87	metallo-protease	other
UHGV-0192737_4	UniRef90	UniRef90_A0A3D1HDV6	Peptidase_M78 domain-containing protein	NA
UHGV-0192737_4	eggNOG-mapper	742733.HMPREF9469_01856	NA	NA
UHGV-0192737_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0192737_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0192737_5	UniRef90	UniRef90_A0A355JC33	XRE family transcriptional regulator	NA
UHGV-0192737_5	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0192737_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0192737_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0192737_5	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0192737_6	UniRef90	UniRef90_A0A356CZJ3	HTH cro/C1-type domain-containing protein	NA
UHGV-0192737_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0192737_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0192737_7	UniRef90	UniRef90_D4JVL5	Prophage antirepressor	NA
UHGV-0192737_7	eggNOG-mapper	883077.HMPREF9241_01671	BRO family, N-terminal domain	NA
UHGV-0192737_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0192737_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0192737_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0192737_7	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0192737_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0192737_9	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0192737_9	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0192737_13	Structural annotation	MF_01549, TIGR02228	NA	NA
UHGV-0192737_14	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0192737_14	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0192737_14	UniRef90	UniRef90_UPI001D091C0C	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0192737_14	eggNOG-mapper	1291050.JAGE01000002_gene3264	sulfate reduction	NA
UHGV-0192737_14	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0192737_14	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0192737_14	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0192737_14	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0192737_16	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0192737_16	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0192737_16	UniRef90	UniRef90_U2KY37	Helicase protein	NA
UHGV-0192737_16	eggNOG-mapper	411473.RUMCAL_00274	DEAD-like helicases superfamily	NA
UHGV-0192737_16	Pfam	PF00270	DEAD/DEAH box helicase	DEAD
UHGV-0192737_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0192737_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0192737_16	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-0192737_17	KOfam	K24451	zim; modification methylase	NA
UHGV-0192737_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0192737_17	UniRef90	UniRef90_A0A3R6Q0Y1	Methyltransferase	NA
UHGV-0192737_17	eggNOG-mapper	411473.RUMCAL_00273	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0192737_17	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0192737_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0192737_17	COG	COG0863	DNA modification methylase	NA
UHGV-0192737_17	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0192737_19	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0192737_19	PHROG	phrog_1499	NA	unknown function
UHGV-0192737_19	UniRef90	UniRef90_D4JVK7	AAA_23 domain-containing protein	NA
UHGV-0192737_19	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0192737_19	Pfam	PF13476	AAA domain	AAA_23
UHGV-0192737_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0192737_19	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0192737_20	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0192737_20	UniRef90	UniRef90_UPI001896F7FA	AAA family ATPase	NA
UHGV-0192737_20	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0192737_20	Pfam	PF13479	AAA domain	AAA_24
UHGV-0192737_20	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0192737_21	PHROG	phrog_2698	NA	unknown function
UHGV-0192737_21	UniRef90	UniRef90_A0A3D1HDU6	NA	NA
UHGV-0192737_21	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-0192737_21	Structural annotation	PF05037	NA	NA
UHGV-0192737_22	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0192737_22	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0192737_22	UniRef90	UniRef90_D4JVK4	DNA or RNA helicases of superfamily II	NA
UHGV-0192737_22	eggNOG-mapper	394503.Ccel_3307	helicase	NA
UHGV-0192737_22	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0192737_22	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0192737_22	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0192737_22	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0192737_22	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0192737_23	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0192737_23	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0192737_23	UniRef90	UniRef90_A0A174ZV32	Regulatory protein repA	NA
UHGV-0192737_23	eggNOG-mapper	610130.Closa_1370	Primase C terminal 2 (PriCT-2)	NA
UHGV-0192737_23	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0192737_23	Pfam	PF13481	AAA domain	AAA_25
UHGV-0192737_23	COG	COG3598	RecA-family ATPase	NA
UHGV-0192737_23	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0192737_25	PHROG	phrog_16687	NA	unknown function
UHGV-0192737_25	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-0192737_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0192737_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0192737_26	UniRef90	UniRef90_B0MKW2	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0192737_26	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0192737_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0192737_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0192737_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0192737_27	PHROG	phrog_22040	NA	unknown function
UHGV-0192737_27	Structural annotation	PF02559, NF008636, COG4568	NA	NA
UHGV-0192737_28	PHROG	phrog_22543	NA	unknown function
UHGV-0192737_29	UniRef90	UniRef90_B0MKX7	NA	NA
UHGV-0192737_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0192737_30	UniRef90	UniRef90_A0A7I8D1K2	Sigma70_r4 domain-containing protein	NA
UHGV-0192737_30	eggNOG-mapper	1392487.JIAD01000001_gene536	sigma factor activity	NA
UHGV-0192737_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0192737_30	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0192737_31	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0192737_31	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0192737_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0192737_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0192737_32	UniRef90	UniRef90_B0MKW5	Phage portal protein, HK97 family	NA
UHGV-0192737_32	eggNOG-mapper	1304866.K413DRAFT_1223	Phage portal protein, HK97 family	NA
UHGV-0192737_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0192737_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0192737_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0192737_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0192737_34	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0192737_34	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0192737_34	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0192737_35	KOfam	K06904	NA	NA
UHGV-0192737_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0192737_35	UniRef90	UniRef90_D4JVJ3	Phage head maturation protease	NA
UHGV-0192737_35	eggNOG-mapper	1196031.ALEG01000039_gene1815	Phage prohead protease, HK97 family	NA
UHGV-0192737_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0192737_35	COG	COG3740	Phage head maturation protease	NA
UHGV-0192737_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0192737_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0192737_36	UniRef90	UniRef90_D4JVJ2	Phage major capsid protein, HK97 family	NA
UHGV-0192737_36	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-0192737_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0192737_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0192737_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0192737_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0192737_37	PHROG	phrog_6865	NA	unknown function
UHGV-0192737_37	Structural annotation	PF01281	NA	NA
UHGV-0192737_38	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0192737_38	UniRef90	UniRef90_A0A352DNU5	Phage gp6-like head-tail connector protein	NA
UHGV-0192737_38	eggNOG-mapper	632245.CLP_2693	Phage gp6-like head-tail connector protein	NA
UHGV-0192737_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0192737_38	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0192737_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0192737_39	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0192737_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0192737_40	Structural annotation	PF05657	NA	NA
UHGV-0192737_41	PHROG	phrog_88	major tail protein	tail
UHGV-0192737_41	UniRef90	UniRef90_D4JVI8	Phage major tail protein, phi13 family	NA
UHGV-0192737_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0192737_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0192737_42	Structural annotation	PF11836	NA	NA
UHGV-0192737_43	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0192737_43	UniRef90	UniRef90_D4JVI5	Phage terminase-like protein, large subunit	NA
UHGV-0192737_43	eggNOG-mapper	903814.ELI_1296	Phage Terminase	NA
UHGV-0192737_43	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0192737_43	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0192737_43	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0192737_43	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0192737_45	Structural annotation	NF041921	NA	NA
UHGV-0192737_46	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0192737_47	KOfam	K16461	CEP135, CEP4; centrosomal protein CEP135	NA
UHGV-0192737_47	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0192737_47	UniRef90	UniRef90_D4JVI1	Tape measure domain	NA
UHGV-0192737_47	eggNOG-mapper	755731.Clo1100_1173	tape measure	NA
UHGV-0192737_47	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0192737_47	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0192737_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0192737_47	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0192737_48	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0192737_49	PHROG	phrog_25468	NA	unknown function
UHGV-0192737_49	UniRef90	UniRef90_B0MKT5	Hep/Hag repeat protein	NA
UHGV-0192737_49	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0192737	Yes	36,461 bps	44.43%	97.56%	0.9779
UHGV-0074766	No	39,844 bps	44.24%	99.90%	0.9699
UHGV-1434948	No	19,991 bps	45.67%	50.31%	0.9801
UHGV-1575783	No	16,321 bps	45.84%	43.67%	0.9781
UHGV-1711435	No	10,495 bps	45.54%	28.08%	0.9781