vOTU-011345

Overview

vOTU representative UHGV-0193042

No. of genomes 3

Genome length 34,431 bps

Completeness 99.90% (high-quality)

Host Treponema D sp900541995

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-011345
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00156 › vSUBFAM-01319 › vGENUS-02736 › vSUBGEN-10621 › vOTU-011345
Host taxonomy	Bacteria › Spirochaetota › Spirochaetia › Treponematales › Treponemataceae › Treponema D › Treponema D sp900541995
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0193042
BioSample	NA
Genome length	34,431 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	52
CDS density	94.71%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0193042_3	UniRef90	UniRef90_UPI0011CAEDCA	VRR-NUC domain-containing protein	NA
UHGV-0193042_3	eggNOG-mapper	1125725.HMPREF1325_1302	NA	NA
UHGV-0193042_3	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-0193042_6	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0193042_6	UniRef90	UniRef90_UPI0011CB479F	NA	NA
UHGV-0193042_6	eggNOG-mapper	545694.TREPR_0892	NA	NA
UHGV-0193042_6	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0193042_6	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-0193042_7	PHROG	phrog_15098	NA	unknown function
UHGV-0193042_7	UniRef90	UniRef90_A8ATE5	Gp52	NA
UHGV-0193042_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0193042_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0193042_8	UniRef90	UniRef90_M2AXR1	Single-stranded DNA-binding protein	NA
UHGV-0193042_8	eggNOG-mapper	1124982.MSI_22640	Single-stranded DNA-binding protein	NA
UHGV-0193042_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0193042_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0193042_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0193042_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0193042_8	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0193042_9	PHROG	phrog_21649	NA	unknown function
UHGV-0193042_9	UniRef90	UniRef90_A0A5E4IAL9	ERF superfamily protein	NA
UHGV-0193042_9	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0193042_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-0193042_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0193042_9	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0193042_10	eggNOG-mapper	1539298.JO41_08365	NA	NA
UHGV-0193042_10	Structural annotation	PF16784	NA	NA
UHGV-0193042_11	UniRef90	UniRef90_A0A7W8LNA3	NA	NA
UHGV-0193042_11	Structural annotation	PF19789	NA	NA
UHGV-0193042_12	eggNOG-mapper	1125725.HMPREF1325_1313	NA	NA
UHGV-0193042_13	PHROG	phrog_15768	NA	unknown function
UHGV-0193042_13	UniRef90	UniRef90_A0A0E2E9N1	NA	NA
UHGV-0193042_13	eggNOG-mapper	1232428.CAVO010000067_gene439	NA	NA
UHGV-0193042_13	Pfam	PF19808	NA	DUF6291
UHGV-0193042_13	Structural annotation	PF19808	NA	NA
UHGV-0193042_14	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0193042_14	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0193042_14	UniRef90	UniRef90_M2BFI9	AAA domain-containing protein	NA
UHGV-0193042_14	eggNOG-mapper	641147.HMPREF9021_02339	IstB-like ATP binding protein	NA
UHGV-0193042_14	PADLOC	DrmD_00013	DrmD	DISARM
UHGV-0193042_14	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0193042_14	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0193042_14	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0193042_15	eggNOG-mapper	1539298.JO41_12705	NA	NA
UHGV-0193042_16	UniRef90	UniRef90_A0A843HS63	MazG domain-containing protein	NA
UHGV-0193042_16	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0193042_18	PHROG	phrog_5781	NA	unknown function
UHGV-0193042_18	UniRef90	UniRef90_UPI0003FCFFC2	NA	NA
UHGV-0193042_18	eggNOG-mapper	742767.HMPREF9456_03346	NA	NA
UHGV-0193042_18	Pfam	PF14359	NA	DUF4406
UHGV-0193042_18	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0193042_19	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0193042_19	UniRef90	UniRef90_UPI001CC0BF33	NAD(P)-dependent oxidoreductase	NA
UHGV-0193042_19	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-0193042_19	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0193042_19	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0193042_21	Structural annotation	PF12961, COG2028	NA	NA
UHGV-0193042_22	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0193042_22	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0193042_22	UniRef90	UniRef90_U1FPG3	DNA methylase family protein	NA
UHGV-0193042_22	eggNOG-mapper	1125725.HMPREF1325_1319	N-4 methylation of cytosine	NA
UHGV-0193042_22	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0193042_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0193042_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0193042_22	COG	COG0863	DNA modification methylase	NA
UHGV-0193042_22	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0193042_24	UniRef90	UniRef90_E8PPG9	Helix-turn-helix Fis-type	NA
UHGV-0193042_24	eggNOG-mapper	743525.TSC_c10130	NA	NA
UHGV-0193042_24	Structural annotation	PF13022	NA	NA
UHGV-0193042_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0193042_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0193042_25	UniRef90	UniRef90_M2BSU5	PBSX family phage terminase, large subunit	NA
UHGV-0193042_25	eggNOG-mapper	1125725.HMPREF1325_1321	PBSX family phage terminase, large subunit	NA
UHGV-0193042_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0193042_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0193042_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0193042_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0193042_27	UniRef90	UniRef90_U1FPF4	Portal protein, A118 family	NA
UHGV-0193042_27	eggNOG-mapper	1125725.HMPREF1325_1322	phage minor capsid protein	NA
UHGV-0193042_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0193042_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0193042_29	UniRef90	UniRef90_UPI0011C910CB	minor capsid protein	NA
UHGV-0193042_29	eggNOG-mapper	1539298.JO41_08260	Phage minor capsid protein 2	NA
UHGV-0193042_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0193042_29	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0193042_29	COG	COG2369	NA	NA
UHGV-0193042_29	Structural annotation	PF06152	NA	NA
UHGV-0193042_30	eggNOG-mapper	1125699.HMPREF9194_01056	NA	NA
UHGV-0193042_33	UniRef90	UniRef90_UPI0011C917A8	pyocin knob domain-containing protein	NA
UHGV-0193042_35	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0193042_35	PHROG	phrog_9611	endolysin	lysis
UHGV-0193042_35	UniRef90	UniRef90_M2AXT2	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0193042_35	eggNOG-mapper	1125725.HMPREF1325_1326	Ami_2	NA
UHGV-0193042_35	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0193042_35	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0193042_35	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0193042_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0193042_39	UniRef90	UniRef90_U1FQG8	Phage minor structural protein GP20	NA
UHGV-0193042_39	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-0193042_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0193042_39	Structural annotation	PF06810	NA	NA
UHGV-0193042_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0193042_40	UniRef90	UniRef90_R7FBE8	Phage major capsid protein	NA
UHGV-0193042_40	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0193042_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0193042_41	eggNOG-mapper	1539298.JO41_08170	NA	NA
UHGV-0193042_42	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0193042_42	eggNOG-mapper	1539298.JO41_08190	Minor capsid protein	NA
UHGV-0193042_42	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0193042_42	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0193042_42	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0193042_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0193042_43	UniRef90	UniRef90_A0A7T3V3Z0	Minor capsid protein	NA
UHGV-0193042_43	eggNOG-mapper	1539298.JO41_08160	Minor capsid protein	NA
UHGV-0193042_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0193042_43	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0193042_44	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0193042_44	UniRef90	UniRef90_UPI0011C89F23	minor capsid protein	NA
UHGV-0193042_44	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0193042_45	PHROG	phrog_3099	NA	unknown function
UHGV-0193042_45	eggNOG-mapper	1539298.JO41_08150	NA	NA
UHGV-0193042_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0193042_46	PHROG	phrog_706	NA	unknown function
UHGV-0193042_46	UniRef90	UniRef90_UPI0011C87A99	Gp15 family bacteriophage protein	NA
UHGV-0193042_46	eggNOG-mapper	1539298.JO41_08145	Bacteriophage Gp15 protein	NA
UHGV-0193042_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0193042_46	Structural annotation	PF06854	NA	NA
UHGV-0193042_47	UniRef90	UniRef90_A0A7W8GBU4	Chromosome segregation ATPase	NA
UHGV-0193042_47	eggNOG-mapper	1125725.HMPREF1325_1340	nuclear chromosome segregation	NA
UHGV-0193042_47	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0193042_47	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-0193042_48	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0193042_48	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0193042_49	eggNOG-mapper	1539298.JO41_08130	NA	NA
UHGV-0193042_49	Structural annotation	PF08875, MF_00833, TIGR01600, COG4672	NA	NA
UHGV-0193042_50	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0193042_50	PHROG	phrog_329	minor tail protein	tail
UHGV-0193042_50	UniRef90	UniRef90_A0A0A0X0T9	NlpC/P60 domain-containing protein	NA
UHGV-0193042_50	eggNOG-mapper	1539298.JO41_08125	NlpC/P60 family	NA
UHGV-0193042_50	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0193042_50	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0193042_51	eggNOG-mapper	1539298.JO41_00015	cellulase activity	NA
UHGV-0193042_51	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0193042_51	Structural annotation	PF13550, PF03658, PF14879, MF_00460, NF040662, NF005028, COG4733, COG2914	NA	NA
UHGV-0193042_52	eggNOG-mapper	313606.M23134_04174	NA	NA
UHGV-0193042_52	Pfam	PF16940	Chloroplast envelope transporter	Tic110

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0193042	Yes	34,431 bps	44.86%	99.90%	0.9797
UHGV-0133849	No	36,584 bps	44.60%	99.90%	0.9788
UHGV-0238110	No	14,178 bps	43.28%	41.51%	0.9750