vOTU-011382

Overview

vOTU representative UHGV-0195254

No. of genomes 4

Genome length 37,223 bps

Completeness 99.90% (high-quality)

Host CAG-269 sp001916035

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-011382
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-05810 › vGENUS-13416 › vSUBGEN-21528 › vOTU-011382
Host taxonomy	Bacteria › Firmicutes A › Clostridia › TANB77 › CAG-508 › CAG-269 › CAG-269 sp001916035
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0195254
BioSample	NA
Genome length	37,223 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	67
CDS density	92.36%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0195254_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0195254_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0195254_1	UniRef90	UniRef90_UPI001AA14D0F	recombinase family protein	NA
UHGV-0195254_1	eggNOG-mapper	1157490.EL26_02935	Recombinase	NA
UHGV-0195254_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0195254_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0195254_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0195254_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0195254_2	PHROG	phrog_22655	NA	unknown function
UHGV-0195254_2	eggNOG-mapper	1347392.CCEZ01000017_gene1162	DNA topoisomerase type I activity	NA
UHGV-0195254_2	Pfam	PF18780	Homing endonuclease associated repeat	HNH_repeat
UHGV-0195254_2	COG	COG0551	DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains	NA
UHGV-0195254_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0195254_4	PHROG	phrog_6775	NA	unknown function
UHGV-0195254_4	AcrCatalog	cluster_37489	NA	NA
UHGV-0195254_5	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0195254_5	UniRef90	UniRef90_A0A1C8E9A5	Antirepressor	NA
UHGV-0195254_5	eggNOG-mapper	190478.Q8SBM8_9CAUD	DNA binding	NA
UHGV-0195254_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0195254_6	PHROG	phrog_435	endolysin	lysis
UHGV-0195254_6	UniRef90	UniRef90_K0B0H0	Cell wall hydrolase/autolysin	NA
UHGV-0195254_6	eggNOG-mapper	1128398.Curi_c25430	Sporulation related domain	NA
UHGV-0195254_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0195254_6	Pfam	PF05036	SPOR domain	SPOR
UHGV-0195254_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0195254_7	PHROG	phrog_199	holin	lysis
UHGV-0195254_7	UniRef90	UniRef90_UPI001C0EF504	phage holin family protein	NA
UHGV-0195254_7	eggNOG-mapper	1211817.CCAT010000039_gene115	Bacteriophage holin family	NA
UHGV-0195254_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0195254_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0195254_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0195254_8	PHROG	phrog_18444	NA	unknown function
UHGV-0195254_8	eggNOG-mapper	545243.BAEV01000153_gene380	NA	NA
UHGV-0195254_9	PHROG	phrog_6616	tail protein	tail
UHGV-0195254_9	eggNOG-mapper	1347392.CCEZ01000017_gene1155	NA	NA
UHGV-0195254_10	PHROG	phrog_1194	NA	unknown function
UHGV-0195254_10	UniRef90	UniRef90_A0A0V8EA29	NA	NA
UHGV-0195254_10	eggNOG-mapper	1305708.M9Q2F8_9CAUD	NA	NA
UHGV-0195254_10	Pfam	PF20458	NA	DUF6711
UHGV-0195254_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0195254_11	eggNOG-mapper	717606.PaecuDRAFT_3132	Phage-related minor tail protein	NA
UHGV-0195254_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0195254_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0195254_13	eggNOG-mapper	1414720.CBYM010000001_gene706	NA	NA
UHGV-0195254_14	PHROG	phrog_2115	tail protein	tail
UHGV-0195254_14	UniRef90	UniRef90_A0A533S6D3	Gene transfer agent family protein	NA
UHGV-0195254_14	eggNOG-mapper	1414720.CBYM010000002_gene564	NA	NA
UHGV-0195254_14	Structural annotation	PF16478	NA	NA
UHGV-0195254_16	PHROG	phrog_158	major tail protein	tail
UHGV-0195254_16	UniRef90	UniRef90_A0A3D2X3E0	Histidine kinase (Fragment)	NA
UHGV-0195254_16	eggNOG-mapper	1536773.R70331_25690	Phage tail tube protein	NA
UHGV-0195254_16	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0195254_16	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-0195254_17	PHROG	phrog_347	tail terminator	connector
UHGV-0195254_17	UniRef90	UniRef90_A0A844FEQ3	NA	NA
UHGV-0195254_17	eggNOG-mapper	1414720.CBYM010000002_gene567	NA	NA
UHGV-0195254_17	Pfam	PF11367	NA	DUF3168
UHGV-0195254_17	Structural annotation	PF11367	NA	NA
UHGV-0195254_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0195254_19	UniRef90	UniRef90_A0A844FEP2	HK97 gp10 family phage protein	NA
UHGV-0195254_19	eggNOG-mapper	1414720.CBYM010000002_gene568	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0195254_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0195254_19	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0195254_20	PHROG	phrog_20526	NA	unknown function
UHGV-0195254_22	PHROG	phrog_25	head closure Hc1	connector
UHGV-0195254_22	UniRef90	UniRef90_A0A844FER4	Phage head closure protein	NA
UHGV-0195254_22	eggNOG-mapper	1121342.AUCO01000004_gene642	head-tail adaptor	NA
UHGV-0195254_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0195254_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0195254_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0195254_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0195254_23	PHROG	phrog_5223	neck protein	connector
UHGV-0195254_23	UniRef90	UniRef90_A0A844FEQ1	DNA-packaging protein	NA
UHGV-0195254_23	eggNOG-mapper	1382358.JHVN01000024_gene1709	NA	NA
UHGV-0195254_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0195254_23	Structural annotation	TIGR01560	NA	NA
UHGV-0195254_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0195254_25	UniRef90	UniRef90_A0A844FEP6	Phage major capsid protein	NA
UHGV-0195254_25	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0195254_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0195254_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0195254_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0195254_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0195254_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0195254_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0195254_26	UniRef90	UniRef90_A0A844FEN3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0195254_26	eggNOG-mapper	1567010.A0A0A7S0Y0_9VIRU	serine-type endopeptidase activity	NA
UHGV-0195254_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0195254_26	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0195254_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0195254_27	UniRef90	UniRef90_A0A844FEU9	Phage portal protein	NA
UHGV-0195254_27	eggNOG-mapper	1382358.JHVN01000024_gene1705	Phage portal protein	NA
UHGV-0195254_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0195254_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0195254_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0195254_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0195254_29	UniRef90	UniRef90_A0A844FEP1	Terminase large subunit	NA
UHGV-0195254_29	eggNOG-mapper	318464.IO99_13765	Terminase	NA
UHGV-0195254_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0195254_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0195254_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0195254_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0195254_30	PHROG	phrog_1066	NA	unknown function
UHGV-0195254_30	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0195254_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0195254_30	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0195254_32	PHROG	phrog_17021	NA	unknown function
UHGV-0195254_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0195254_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0195254_33	UniRef90	UniRef90_A0A844FER8	HNH endonuclease	NA
UHGV-0195254_33	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0195254_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0195254_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0195254_34	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0195254_34	UniRef90	UniRef90_UPI000DCA5D33	GIY-YIG nuclease family protein	NA
UHGV-0195254_34	eggNOG-mapper	1121931.AUHG01000010_gene164	Intron encoded nuclease repeat motif	NA
UHGV-0195254_34	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0195254_34	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0195254_34	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0195254_34	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0195254_34	Structural annotation	PF19835, PF07453, MF_01029, TIGR01453, COG2827	NA	NA
UHGV-0195254_35	UniRef90	UniRef90_A0A0B4WEI3	Putative membrane protein	NA
UHGV-0195254_37	PHROG	phrog_9211	NA	unknown function
UHGV-0195254_37	UniRef90	UniRef90_A0A2B2GB72	NA	NA
UHGV-0195254_37	eggNOG-mapper	290402.Cbei_2113	NA	NA
UHGV-0195254_37	Pfam	PF08980	NA	DUF1883
UHGV-0195254_37	Structural annotation	PF08980	NA	NA
UHGV-0195254_39	PHROG	phrog_10157	NA	unknown function
UHGV-0195254_39	UniRef90	UniRef90_A0A1H3F2X8	Sigma-70, region 4	NA
UHGV-0195254_39	eggNOG-mapper	997346.HMPREF9374_1126	NA	NA
UHGV-0195254_40	PHROG	phrog_398	NA	unknown function
UHGV-0195254_40	UniRef90	UniRef90_UPI001F16EB49	putative HNHc nuclease	NA
UHGV-0195254_40	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0195254_40	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0195254_40	Structural annotation	PF16784, NF007281	NA	NA
UHGV-0195254_41	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0195254_41	UniRef90	UniRef90_UPI001C0EEBDF	dUTP diphosphatase	NA
UHGV-0195254_41	eggNOG-mapper	1347392.CCEZ01000060_gene3273	Protein conserved in bacteria	NA
UHGV-0195254_41	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0195254_41	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0195254_41	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0195254_44	PHROG	phrog_19490	NA	unknown function
UHGV-0195254_44	UniRef90	UniRef90_A0A373PRN0	Glutathione peroxidase	NA
UHGV-0195254_46	eggNOG-mapper	1391647.AVSV01000022_gene2528	NA	NA
UHGV-0195254_47	PHROG	phrog_1029	NA	unknown function
UHGV-0195254_47	eggNOG-mapper	1443125.Z962_p0034	NA	NA
UHGV-0195254_47	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0195254_48	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0195254_48	UniRef90	UniRef90_UPI001030371A	replication terminator protein	NA
UHGV-0195254_48	eggNOG-mapper	1415775.U729_2590	replication terminator protein, phage associated	NA
UHGV-0195254_49	KOfam	K03700	recU; recombination protein U	NA
UHGV-0195254_49	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0195254_49	UniRef90	UniRef90_UPI001C9C6F8A	Holliday junction resolvase RecU	NA
UHGV-0195254_49	eggNOG-mapper	1128398.Curi_c22060	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0195254_49	Pfam	PF03838	Recombination protein U	RecU
UHGV-0195254_49	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0195254_49	HAMAP	MF_00130	Holliday junction resolvase RecU [recU]	NA
UHGV-0195254_49	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0195254_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0195254_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0195254_51	UniRef90	UniRef90_UPI0005B2900E	single-stranded DNA-binding protein	NA
UHGV-0195254_51	eggNOG-mapper	1347392.CCEZ01000060_gene3285	Single-strand binding protein family	NA
UHGV-0195254_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0195254_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0195254_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0195254_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0195254_51	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0195254_52	eggNOG-mapper	1304866.K413DRAFT_4636	NA	NA
UHGV-0195254_52	Structural annotation	PF17457	NA	NA
UHGV-0195254_53	KOfam	K00942	gmk, GUK1; guanylate kinase [EC:2.7.4.8]	NA
UHGV-0195254_53	PHROG	phrog_1815	guanylate kinase	other
UHGV-0195254_53	UniRef90	UniRef90_K0AXC4	Putative guanylate kinase	NA
UHGV-0195254_53	eggNOG-mapper	1128398.Curi_c14480	Guanylate kinase	NA
UHGV-0195254_53	Pfam	PF13671	AAA domain	AAA_33
UHGV-0195254_53	Pfam	PF00625	Guanylate kinase	Guanylate_kin
UHGV-0195254_53	COG	COG0194	Guanylate kinase	NA
UHGV-0195254_53	Structural annotation	PF00625, MF_00328, TIGR03263, COG0194	NA	NA
UHGV-0195254_54	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0195254_55	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0195254_55	UniRef90	UniRef90_A0A5M9N0S8	DnaD domain protein (Fragment)	NA
UHGV-0195254_55	eggNOG-mapper	632292.Calhy_0752	Loader and inhibitor of phage G40P	NA
UHGV-0195254_55	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0195254_56	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0195254_56	UniRef90	UniRef90_UPI000B8A7816	helix-turn-helix domain-containing protein	NA
UHGV-0195254_56	eggNOG-mapper	1408823.AXUS01000025_gene2662	DNA-binding transcription factor activity	NA
UHGV-0195254_56	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0195254_56	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0195254_56	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0195254_57	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0195254_57	UniRef90	UniRef90_UPI000985D1CB	ERF family protein	NA
UHGV-0195254_57	eggNOG-mapper	262071.A3QSF3_9CAUD	ERF superfamily	NA
UHGV-0195254_57	Pfam	PF04404	ERF superfamily	ERF
UHGV-0195254_57	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0195254_58	PHROG	phrog_10757	NA	unknown function
UHGV-0195254_65	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0195254_65	UniRef90	UniRef90_A0A7X8HZC6	Histidine kinase	NA
UHGV-0195254_65	eggNOG-mapper	1443125.Z962_05785	NA	NA
UHGV-0195254_65	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0195254_65	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0195254_66	PHROG	phrog_6329	NA	unknown function
UHGV-0195254_66	UniRef90	UniRef90_A0A3Q9BAR3	Phage infection protein	NA
UHGV-0195254_66	eggNOG-mapper	521460.Athe_1020	NA	NA
UHGV-0195254_67	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0195254_67	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0195254_67	UniRef90	UniRef90_S6AVX3	Prophage antirepressor	NA
UHGV-0195254_67	eggNOG-mapper	1352230.S6AVX3_9CAUD	DNA binding	NA
UHGV-0195254_67	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0195254_67	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0195254_67	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0195254	Yes	37,223 bps	31.92%	99.90%	0.9717
UHGV-0142539	No	35,414 bps	32.27%	95.43%	0.9793
UHGV-1421331	No	32,969 bps	31.81%	88.80%	0.9763
UHGV-1532272	No	32,503 bps	32.48%	85.83%	0.9799