vOTU-011411

Overview

vOTU representative UHGV-0196779

No. of genomes 9

Genome length 58,495 bps

Completeness 93.60% (high-quality)

Host Megasphaera sp000417505

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-011411
Number of genomes	9
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 › vSUBFAM-00668 › vGENUS-01454 › vSUBGEN-07947 › vOTU-011411
Host taxonomy	Bacteria › Firmicutes C › Negativicutes › Veillonellales › Megasphaeraceae › Megasphaera › Megasphaera sp000417505
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0196779
BioSample	NA
Genome length	58,495 bps
CheckV completeness	93.60% (high-quality)
CheckV contamination	0.00%
CDS count	66
CDS density	91.30%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0196779_1	KOfam	K07496	K07496; putative transposase	NA
UHGV-0196779_1	PHROG	phrog_506	transposase	integration and excision
UHGV-0196779_1	UniRef90	UniRef90_UPI0015F74F67	RNA-guided endonuclease TnpB family protein	NA
UHGV-0196779_1	eggNOG-mapper	1064535.MELS_1274	TIGRFAM transposase, IS605 OrfB family	NA
UHGV-0196779_1	PADLOC	Type_V_V_U3	Cas12	CRISPR-CAS
UHGV-0196779_1	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0196779_1	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0196779_1	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0196779_1	COG	COG0675	Transposase	NA
UHGV-0196779_2	PHROG	phrog_10691	NA	unknown function
UHGV-0196779_2	UniRef90	UniRef90_UPI0014728F49	transglycosylase SLT domain-containing protein	NA
UHGV-0196779_2	eggNOG-mapper	1232428.CAVO010000067_gene414	Type III restriction enzyme, res subunit	NA
UHGV-0196779_2	PADLOC	PbeA_00005	PbeA	PBE
UHGV-0196779_2	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0196779_2	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0196779_2	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0196779_2	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0196779_2	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0196779_2	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0196779_4	UniRef90	UniRef90_UPI00047F33D6	Hint domain-containing protein	NA
UHGV-0196779_4	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0196779_4	Pfam	PF07591	Pretoxin HINT domain	PT-HINT
UHGV-0196779_4	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0196779_4	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0196779_5	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0196779_6	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0196779_6	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0196779_7	UniRef90	UniRef90_S7HTA2	TarH domain-containing protein	NA
UHGV-0196779_8	PHROG	phrog_34863	NA	unknown function
UHGV-0196779_8	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0196779_8	eggNOG-mapper	1273103.NM10_00929	LysM domain	NA
UHGV-0196779_8	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0196779_8	COG	COG1388	LysM repeat	NA
UHGV-0196779_8	Structural annotation	PF21277	NA	NA
UHGV-0196779_9	PHROG	phrog_28789	NA	unknown function
UHGV-0196779_9	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0196779_9	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0196779_11	KOfam	K14059	int; integrase	NA
UHGV-0196779_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0196779_11	UniRef90	UniRef90_UPI0004143D65	tyrosine-type recombinase/integrase	NA
UHGV-0196779_11	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0196779_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0196779_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0196779_11	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0196779_12	PHROG	phrog_24267	NA	unknown function
UHGV-0196779_12	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0196779_12	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-0196779_12	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0196779_13	eggNOG-mapper	1232428.CAVO010000067_gene418	NA	NA
UHGV-0196779_14	PHROG	phrog_5717	tail protein	tail
UHGV-0196779_14	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0196779_14	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0196779_14	COG	COG4675	Phage tail collar domain	NA
UHGV-0196779_14	Structural annotation	COG4675	NA	NA
UHGV-0196779_15	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-0196779_15	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0196779_16	PHROG	phrog_5417	NA	unknown function
UHGV-0196779_16	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-0196779_16	eggNOG-mapper	1459636.NTE_01434	NA	NA
UHGV-0196779_16	Structural annotation	PF12571	NA	NA
UHGV-0196779_17	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-0196779_17	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0196779_17	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-0196779_18	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0196779_18	Structural annotation	PF20387	NA	NA
UHGV-0196779_19	Structural annotation	PF20387	NA	NA
UHGV-0196779_21	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0196779_21	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0196779_21	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0196779_21	Pfam	PF17236	NA	DUF5309
UHGV-0196779_21	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0196779_22	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0196779_24	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0196779_24	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0196779_24	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-0196779_24	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0196779_24	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0196779_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0196779_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0196779_25	UniRef90	UniRef90_A0A1F8V9T6	Terminase_3 domain-containing protein	NA
UHGV-0196779_25	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-0196779_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0196779_25	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0196779_26	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0196779_26	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-0196779_26	eggNOG-mapper	374526.A5GYP7_9CAUD	endonuclease activity	NA
UHGV-0196779_26	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0196779_26	Structural annotation	PF07141	NA	NA
UHGV-0196779_27	Structural annotation	PF07867	NA	NA
UHGV-0196779_29	Structural annotation	PF20075, TIGR02612	NA	NA
UHGV-0196779_31	UniRef90	UniRef90_A0A1M6HJL8	DarA_C domain-containing protein	NA
UHGV-0196779_31	eggNOG-mapper	558169.AGAV01000004_gene3357	NA	NA
UHGV-0196779_31	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-0196779_31	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0196779_32	PHROG	phrog_16123	NA	unknown function
UHGV-0196779_32	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0196779_33	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0196779_33	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0196779_34	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0196779_34	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0196779_34	UniRef90	UniRef90_UPI00197DB886	dCMP deaminase family protein	NA
UHGV-0196779_34	eggNOG-mapper	1007096.BAGW01000013_gene2399	MafB19-like deaminase	NA
UHGV-0196779_34	PADLOC	dCTPase	NA	NA
UHGV-0196779_34	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0196779_34	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0196779_34	Structural annotation	PF00383, TIGR02571, COG2131	NA	NA
UHGV-0196779_38	PHROG	phrog_918	NA	unknown function
UHGV-0196779_38	UniRef90	UniRef90_UPI001D017B4D	NA	NA
UHGV-0196779_38	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0196779_38	Pfam	PF19791	NA	DUF6275
UHGV-0196779_38	Structural annotation	PF19791	NA	NA
UHGV-0196779_41	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0196779_41	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0196779_41	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0196779_41	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-0196779_41	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0196779_41	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0196779_43	PHROG	phrog_236	nucleotide kinase	other
UHGV-0196779_43	UniRef90	UniRef90_A0A2S0MAB1	NA	NA
UHGV-0196779_43	eggNOG-mapper	706434.HMPREF9429_00388	NA	NA
UHGV-0196779_43	Pfam	PF11753	NA	DUF3310
UHGV-0196779_44	UniRef90	UniRef90_S7HSH7	NA	NA
UHGV-0196779_44	eggNOG-mapper	1273103.NM10_02357	Protein conserved in bacteria	NA
UHGV-0196779_44	Pfam	PF07866	NA	DUF1653
UHGV-0196779_44	COG	COG4728	NA	NA
UHGV-0196779_44	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0196779_45	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0196779_45	eggNOG-mapper	158190.SpiGrapes_2456	radical SAM domain protein	NA
UHGV-0196779_45	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0196779_45	Structural annotation	MF_01865, NF038361, COG0621	NA	NA
UHGV-0196779_46	Structural annotation	PF02482, TIGR00741, COG1544	NA	NA
UHGV-0196779_47	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0196779_47	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0196779_47	UniRef90	UniRef90_A0A2S0MAB6	dUTP diphosphatase	NA
UHGV-0196779_47	eggNOG-mapper	706434.HMPREF9429_00398	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0196779_47	Pfam	PF00692	dUTPase	dUTPase
UHGV-0196779_47	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0196779_47	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0196779_48	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0196779_48	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0196779_48	UniRef90	UniRef90_A0A2S0M9B9	HU family DNA-binding protein	NA
UHGV-0196779_48	eggNOG-mapper	1173029.JH980292_gene2745	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0196779_48	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0196779_48	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0196779_48	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0196779_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0196779_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0196779_49	UniRef90	UniRef90_A0A2S0M9E2	Single-stranded DNA-binding protein	NA
UHGV-0196779_49	eggNOG-mapper	1232428.CAVO010000067_gene437	single-stranded DNA binding	NA
UHGV-0196779_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0196779_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0196779_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0196779_49	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0196779_50	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0196779_50	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0196779_51	PHROG	phrog_37395	NA	unknown function
UHGV-0196779_52	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0196779_53	Structural annotation	PF11417	NA	NA
UHGV-0196779_54	PHROG	phrog_15768	NA	unknown function
UHGV-0196779_54	UniRef90	UniRef90_A0A2S0M9A1	Helix-turn-helix domain-containing protein	NA
UHGV-0196779_54	eggNOG-mapper	1232428.CAVO010000067_gene439	NA	NA
UHGV-0196779_54	Structural annotation	PF13730, MF_01819, NF038251, COG1846	NA	NA
UHGV-0196779_55	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0196779_55	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0196779_55	UniRef90	UniRef90_UPI001980A387	HNH endonuclease	NA
UHGV-0196779_55	eggNOG-mapper	547559.Nmag_0239	HNH endonuclease	NA
UHGV-0196779_55	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0196779_55	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0196779_55	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0196779_56	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0196779_56	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0196779_56	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0196779_57	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0196779_57	UniRef90	UniRef90_A0A2S0MAE8	ERF superfamily protein	NA
UHGV-0196779_57	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0196779_57	Pfam	PF04404	ERF superfamily	ERF
UHGV-0196779_57	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0196779_58	PHROG	phrog_674	NA	unknown function
UHGV-0196779_58	UniRef90	UniRef90_A0A2S0M9A8	NA	NA
UHGV-0196779_58	eggNOG-mapper	1280689.AUJC01000003_gene937	NA	NA
UHGV-0196779_58	Pfam	PF07083	NA	DUF1351
UHGV-0196779_58	Structural annotation	PF07083	NA	NA
UHGV-0196779_60	PHROG	phrog_25045	NA	unknown function
UHGV-0196779_60	UniRef90	UniRef90_A0A2S0M9C6	LysM domain-containing protein	NA
UHGV-0196779_60	eggNOG-mapper	1380354.JIAN01000007_gene84	PFAM Peptidoglycan-binding lysin domain	NA
UHGV-0196779_60	Pfam	PF01476	LysM domain	LysM
UHGV-0196779_60	COG	COG1388	LysM repeat	NA
UHGV-0196779_60	Structural annotation	PF01476, MF_02014, NF010723	NA	NA
UHGV-0196779_61	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0196779_61	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0196779_62	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0196779_62	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0196779_62	UniRef90	UniRef90_A0A2S0M989	Phage antirepressor protein	NA
UHGV-0196779_62	eggNOG-mapper	293826.Amet_0841	Phage antirepressor protein	NA
UHGV-0196779_62	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0196779_62	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0196779_62	COG	COG3617	Prophage antirepressor	NA
UHGV-0196779_62	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0196779_63	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0196779_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0196779_63	UniRef90	UniRef90_UPI001474792D	helix-turn-helix domain-containing protein	NA
UHGV-0196779_63	eggNOG-mapper	1232428.CAVO010000067_gene444	Helix-turn-helix XRE-family like proteins	NA
UHGV-0196779_63	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0196779_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0196779_63	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0196779_63	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0196779_64	PHROG	phrog_87	metallo-protease	other
UHGV-0196779_64	UniRef90	UniRef90_A0A1M6P4K0	Peptidase_M78 domain-containing protein	NA
UHGV-0196779_64	eggNOG-mapper	1123489.AUAN01000010_gene379	IrrE N-terminal-like domain	NA
UHGV-0196779_64	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0196779_64	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0196779_64	Structural annotation	PF06114, COG2856	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0196779	Yes	58,495 bps	50.09%	93.60%	0.9739
UHGV-0123008	No	56,271 bps	50.50%	90.04%	0.9786
UHGV-1334629	No	37,777 bps	48.78%	60.45%	0.9800
UHGV-2015246	No	24,817 bps	51.26%	41.19%	0.9720
UHGV-1790485	No	16,734 bps	51.23%	26.26%	0.9798
UHGV-1701386	No	14,446 bps	48.03%	23.11%	0.9765
UHGV-0121748	No	14,444 bps	48.02%	23.11%	0.9814
UHGV-1637458	No	14,557 bps	52.10%	22.84%	0.9749
UHGV-1813502	No	13,713 bps	52.00%	21.52%	0.9768