vOTU-011428

Overview

vOTU representative UHGV-0197714

No. of genomes 3

Genome length 29,033 bps

Completeness 99.90% (high-quality)

Host Ruminococcus E bromii B

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-011428
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-00239 › vGENUS-00650 › vSUBGEN-01908 › vOTU-011428
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Acutalibacteraceae › Ruminococcus E › Ruminococcus E bromii B
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0197714
BioSample	NA
Genome length	29,033 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	44
CDS density	95.25%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0197714_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0197714_1	PHROG	phrog_20388	endolysin	lysis
UHGV-0197714_1	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0197714_1	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0197714_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0197714_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0197714_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0197714_1	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0197714_2	PHROG	phrog_18591	NA	unknown function
UHGV-0197714_2	eggNOG-mapper	1230343.CANP01000040_gene3044	NA	NA
UHGV-0197714_3	PHROG	phrog_443	holin	lysis
UHGV-0197714_3	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0197714_3	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0197714_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0197714_3	Structural annotation	PF16945	NA	NA
UHGV-0197714_4	PHROG	phrog_1863	NA	unknown function
UHGV-0197714_4	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0197714_4	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0197714_6	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0197714_6	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0197714_6	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0197714_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0197714_7	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0197714_7	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0197714_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0197714_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0197714_7	COG	COG4926	Phage-related protein	NA
UHGV-0197714_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0197714_8	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0197714_8	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0197714_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0197714_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0197714_9	PHROG	phrog_23464	NA	unknown function
UHGV-0197714_9	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-0197714_9	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0197714_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0197714_9	Structural annotation	COG3941	NA	NA
UHGV-0197714_11	PHROG	phrog_1021	NA	unknown function
UHGV-0197714_11	eggNOG-mapper	1321778.HMPREF1982_03556	NA	NA
UHGV-0197714_12	PHROG	phrog_885	major tail protein	tail
UHGV-0197714_12	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-0197714_12	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0197714_12	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0197714_13	Structural annotation	PF12691	NA	NA
UHGV-0197714_14	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0197714_14	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0197714_14	Structural annotation	TIGR01725	NA	NA
UHGV-0197714_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0197714_15	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0197714_15	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0197714_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0197714_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0197714_16	PHROG	phrog_5223	neck protein	connector
UHGV-0197714_16	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0197714_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0197714_16	Structural annotation	TIGR01560	NA	NA
UHGV-0197714_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0197714_17	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0197714_17	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0197714_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0197714_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0197714_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0197714_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0197714_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0197714_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0197714_18	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0197714_18	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0197714_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0197714_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0197714_18	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0197714_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0197714_19	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0197714_19	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0197714_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0197714_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0197714_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0197714_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0197714_20	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0197714_20	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0197714_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0197714_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0197714_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0197714_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0197714_21	PHROG	phrog_1066	NA	unknown function
UHGV-0197714_21	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0197714_21	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0197714_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0197714_22	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0197714_22	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0197714_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0197714_23	UniRef90	UniRef90_A0A374MXG7	XRE family transcriptional regulator	NA
UHGV-0197714_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197714_26	PHROG	phrog_8684	NA	unknown function
UHGV-0197714_26	UniRef90	UniRef90_A0A412ULY6	YopX domain-containing protein	NA
UHGV-0197714_26	eggNOG-mapper	563031.HMPREF0666_01127	YopX protein	NA
UHGV-0197714_26	Pfam	PF09643	YopX protein	YopX
UHGV-0197714_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0197714_29	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0197714_29	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0197714_29	UniRef90	UniRef90_A0A2N0ULU7	SF3 helicase domain-containing protein	NA
UHGV-0197714_29	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0197714_29	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0197714_29	Pfam	PF19263	NA	DUF5906
UHGV-0197714_29	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0197714_29	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0197714_29	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0197714_29	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0197714_30	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0197714_30	UniRef90	UniRef90_A0A374ND86	NA	NA
UHGV-0197714_30	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-0197714_30	Pfam	PF05037	NA	DUF669
UHGV-0197714_30	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0197714_31	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0197714_31	UniRef90	UniRef90_A0A374N329	VRR-NUC domain-containing protein	NA
UHGV-0197714_31	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0197714_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0197714_31	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0197714_32	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0197714_32	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0197714_32	UniRef90	UniRef90_A0A374N1T8	Helicase	NA
UHGV-0197714_32	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0197714_32	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0197714_32	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0197714_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0197714_32	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0197714_32	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0197714_33	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0197714_33	UniRef90	UniRef90_UPI001A9B3ECC	AAA family ATPase	NA
UHGV-0197714_33	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0197714_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-0197714_33	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0197714_34	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0197714_34	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-0197714_34	eggNOG-mapper	1027396.LMOSA_21290	Siphovirus Gp157	NA
UHGV-0197714_34	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0197714_34	Structural annotation	PF05565	NA	NA
UHGV-0197714_35	PHROG	phrog_15609	NA	unknown function
UHGV-0197714_35	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0197714_35	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0197714_35	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0197714_36	PHROG	phrog_8470	NA	unknown function
UHGV-0197714_36	UniRef90	UniRef90_UPI0018E45158	PcfJ domain-containing protein	NA
UHGV-0197714_36	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0197714_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0197714_36	Structural annotation	PF14284	NA	NA
UHGV-0197714_39	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0197714_39	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0197714_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0197714_39	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0197714_39	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0197714_39	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0197714_40	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-0197714_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0197714_40	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0197714_41	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0197714_41	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-0197714_41	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0197714_41	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0197714_42	PHROG	phrog_1914	NA	unknown function
UHGV-0197714_42	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0197714_42	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0197714_42	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0197714_42	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0197714_42	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0197714_43	UniRef90	UniRef90_A0A374DTF3	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0197714	Yes	29,033 bps	42.28%	99.90%	0.9801
UHGV-1393248	No	29,544 bps	42.13%	99.90%	0.9794
UHGV-1494201	No	25,776 bps	42.93%	86.69%	0.9798