vOTU-011429

Overview

vOTU representative UHGV-0197737

No. of genomes 4

Genome length 35,075 bps

Completeness 99.27% (high-quality)

Host Streptococcus pneumoniae

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-011429
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00025 › vSUBFAM-04898 › vGENUS-09432 › vSUBGEN-11037 › vOTU-011429
Host taxonomy	Bacteria › Firmicutes › Bacilli › Lactobacillales › Streptococcaceae › Streptococcus › Streptococcus pneumoniae
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0197737
BioSample	NA
Genome length	35,075 bps
CheckV completeness	99.27% (high-quality)
CheckV contamination	0.00%
CDS count	60
CDS density	90.44%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0197737_1	eggNOG-mapper	1211813.CAPH01000018_gene943	MvaI/BcnI restriction endonuclease family	NA
UHGV-0197737_1	Pfam	PF15515	MvaI/BcnI restriction endonuclease family	MvaI_BcnI
UHGV-0197737_4	UniRef90	UniRef90_A0A372SGU9	CHAP domain-containing protein	NA
UHGV-0197737_4	eggNOG-mapper	1235796.C815_01769	hydrolase, family 25	NA
UHGV-0197737_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0197737_4	Structural annotation	PF05382, NF033742, COG3942	NA	NA
UHGV-0197737_5	PHROG	phrog_13256	NA	unknown function
UHGV-0197737_5	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0197737_8	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0197737_8	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0197737_9	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0197737_9	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0197737_9	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0197737_9	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0197737_14	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0197737_15	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0197737_16	Structural annotation	PF20747	NA	NA
UHGV-0197737_17	PHROG	phrog_7064	tail protein	tail
UHGV-0197737_17	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-0197737_18	PHROG	phrog_13564	minor tail protein	tail
UHGV-0197737_18	eggNOG-mapper	1123263.AUKY01000046_gene478	NA	NA
UHGV-0197737_18	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-0197737_18	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0197737_19	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0197737_19	UniRef90	UniRef90_R7FHV4	Phage tail tape measure protein family	NA
UHGV-0197737_19	eggNOG-mapper	1033743.CAES01000104_gene3490	Phage-related minor tail protein	NA
UHGV-0197737_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0197737_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0197737_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0197737_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0197737_20	PHROG	phrog_709	NA	unknown function
UHGV-0197737_20	Structural annotation	PF11836	NA	NA
UHGV-0197737_21	PHROG	phrog_88	major tail protein	tail
UHGV-0197737_21	UniRef90	UniRef90_A0A7V6Y5X1	Phage tail protein	NA
UHGV-0197737_21	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0197737_21	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0197737_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0197737_21	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0197737_23	eggNOG-mapper	742741.HMPREF9475_02370	NA	NA
UHGV-0197737_23	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0197737_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0197737_24	UniRef90	UniRef90_A0A098AU88	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0197737_24	eggNOG-mapper	1111134.HMPREF1253_0379	NA	NA
UHGV-0197737_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0197737_24	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0197737_25	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0197737_25	UniRef90	UniRef90_A0A419G239	Phage head-tail adapter protein	NA
UHGV-0197737_25	eggNOG-mapper	596315.HMPREF0634_0222	head-tail adaptor	NA
UHGV-0197737_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0197737_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0197737_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0197737_26	PHROG	phrog_5223	neck protein	connector
UHGV-0197737_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0197737_27	UniRef90	UniRef90_A0A356CXS9	Phage major capsid protein	NA
UHGV-0197737_27	eggNOG-mapper	1160721.RBI_I01582	Phage capsid family	NA
UHGV-0197737_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0197737_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0197737_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0197737_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0197737_28	KOfam	K06904	NA	NA
UHGV-0197737_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0197737_28	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-0197737_28	eggNOG-mapper	642492.Clole_1857	Phage prohead protease, HK97 family	NA
UHGV-0197737_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0197737_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0197737_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0197737_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0197737_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0197737_29	UniRef90	UniRef90_UPI000A35AB3D	phage portal protein	NA
UHGV-0197737_29	eggNOG-mapper	1408438.JADD01000004_gene1088	Phage portal protein	NA
UHGV-0197737_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0197737_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0197737_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0197737_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0197737_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0197737_30	UniRef90	UniRef90_A0A3S0Z9A1	Terminase large subunit	NA
UHGV-0197737_30	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0197737_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0197737_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0197737_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0197737_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0197737_31	PHROG	phrog_1066	NA	unknown function
UHGV-0197737_31	eggNOG-mapper	768704.Desmer_4467	NA	NA
UHGV-0197737_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0197737_32	UniRef90	UniRef90_A0A6N0I3U4	HNH endonuclease	NA
UHGV-0197737_32	eggNOG-mapper	1229783.C273_11291	HNH nucleases	NA
UHGV-0197737_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0197737_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0197737_34	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0197737_34	Structural annotation	PF04545, MF_00674, NF008895, COG1595	NA	NA
UHGV-0197737_49	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0197737_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0197737_49	UniRef90	UniRef90_A0A1M7NLW3	Site-specific recombinase XerD	NA
UHGV-0197737_49	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0197737_49	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0197737_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0197737_49	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0197737_49	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0197737_50	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0197737_50	UniRef90	UniRef90_UPI0004840B70	septation regulator SpoVG	NA
UHGV-0197737_50	eggNOG-mapper	1304284.L21TH_1639	Could be involved in septation	NA
UHGV-0197737_50	Pfam	PF04026	SpoVG	SpoVG
UHGV-0197737_50	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0197737_50	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0197737_51	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0197737_51	UniRef90	UniRef90_A0A7C6RRJ5	Septation regulator SpoVG	NA
UHGV-0197737_51	eggNOG-mapper	1541960.KQ78_02074	Could be involved in septation	NA
UHGV-0197737_51	Pfam	PF04026	SpoVG	SpoVG
UHGV-0197737_51	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0197737_51	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0197737_54	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0197737_54	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0197737_54	UniRef90	UniRef90_UPI0011599948	helix-turn-helix domain-containing protein	NA
UHGV-0197737_54	eggNOG-mapper	218284.CCDN010000001_gene839	Helix-turn-helix domain	NA
UHGV-0197737_54	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0197737_54	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0197737_54	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0197737_54	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0197737_54	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0197737_57	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0197737_57	UniRef90	UniRef90_A0A1B7JWU6	HTH cro/C1-type domain-containing protein	NA
UHGV-0197737_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197737_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0197737_57	Structural annotation	PF12844, NF041677, COG1396	NA	NA
UHGV-0197737_58	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0197737_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0197737_58	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0197737_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197737_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0197737_60	KOfam	K14059	int; integrase	NA
UHGV-0197737_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0197737_60	UniRef90	UniRef90_R5LPI4	Tyr recombinase domain-containing protein	NA
UHGV-0197737_60	eggNOG-mapper	1232449.BAHV02000008_gene609	Site-specific recombinase, phage integrase family	NA
UHGV-0197737_60	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0197737_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0197737_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0197737_60	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0197737	Yes	35,075 bps	29.45%	99.27%	0.9359
UHGV-0055592	No	33,529 bps	29.43%	94.93%	0.9448
UHGV-1499893	No	19,424 bps	31.01%	55.10%	0.9692
UHGV-1670074	No	10,013 bps	31.13%	26.62%	0.9719