vOTU-011524

Overview

vOTU representative UHGV-0203029

No. of genomes 5

Genome length 34,042 bps

Completeness 94.34% (high-quality)

Host Ruminococcus D bicirculans

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-011524
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-00347 › vGENUS-00233 › vSUBGEN-09175 › vOTU-011524
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminococcus D › Ruminococcus D bicirculans
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0203029
BioSample	SAMN10290222
Genome length	34,042 bps
CheckV completeness	94.34% (high-quality)
CheckV contamination	0.00%
CDS count	49
CDS density	92.40%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0203029_3	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0203029_3	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0203029_3	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0203029_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0203029_3	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0203029_6	PHROG	phrog_824	NA	unknown function
UHGV-0203029_6	UniRef90	UniRef90_A0A373V639	VRR-NUC domain-containing protein	NA
UHGV-0203029_6	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0203029_6	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0203029_6	Structural annotation	PF08774	NA	NA
UHGV-0203029_7	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0203029_7	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0203029_7	UniRef90	UniRef90_A0A373V5W0	ATP-dependent helicase	NA
UHGV-0203029_7	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0203029_7	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0203029_7	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0203029_7	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0203029_7	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0203029_7	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0203029_8	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0203029_8	UniRef90	UniRef90_A0A1C6FHQ3	Superfamily II helicase and inactivated derivatives	NA
UHGV-0203029_8	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0203029_8	Pfam	PF06048	NA	DUF927
UHGV-0203029_8	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0203029_8	COG	COG5519	NA	NA
UHGV-0203029_8	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0203029_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0203029_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0203029_9	UniRef90	UniRef90_A0A1C6FIL5	Helix-destabilizing protein	NA
UHGV-0203029_9	eggNOG-mapper	1121370.AQUY01000001_gene1006	Single-strand binding protein family	NA
UHGV-0203029_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0203029_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0203029_9	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0203029_10	PHROG	phrog_3657	NA	unknown function
UHGV-0203029_10	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-0203029_11	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0203029_11	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0203029_11	UniRef90	UniRef90_A0A1C6FHM2	Exodeoxyribonuclease 8	NA
UHGV-0203029_11	eggNOG-mapper	1454004.AW11_02382	NA	NA
UHGV-0203029_11	Pfam	PF12684	NA	DUF3799
UHGV-0203029_11	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0203029_11	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0203029_15	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0203029_15	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0203029_18	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0203029_18	UniRef90	UniRef90_R6T0I0	MerR family transcriptional regulator	NA
UHGV-0203029_18	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0203029_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0203029_18	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0203029_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0203029_19	UniRef90	UniRef90_R6TCY9	Transcriptional regulator	NA
UHGV-0203029_19	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0203029_19	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0203029_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0203029_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0203029_20	UniRef90	UniRef90_R6U4I7	DNA-binding helix-turn-helix protein	NA
UHGV-0203029_20	eggNOG-mapper	945021.TEH_08310	Helix-turn-helix XRE-family like proteins	NA
UHGV-0203029_20	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0203029_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203029_20	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0203029_20	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0203029_22	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0203029_22	UniRef90	UniRef90_A0A373XZS2	XRE family transcriptional regulator	NA
UHGV-0203029_22	eggNOG-mapper	269799.Gmet_3438	Cupin 2, conserved barrel domain protein	NA
UHGV-0203029_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203029_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0203029_22	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0203029_23	PHROG	phrog_7974	NA	unknown function
UHGV-0203029_23	UniRef90	UniRef90_R6T7M7	NA	NA
UHGV-0203029_23	eggNOG-mapper	1347369.CCAD010000035_gene1055	NA	NA
UHGV-0203029_23	Pfam	PF14020	NA	DUF4236
UHGV-0203029_23	Structural annotation	PF14020	NA	NA
UHGV-0203029_24	KOfam	K14059	int; integrase	NA
UHGV-0203029_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0203029_24	UniRef90	UniRef90_R6T0I6	Prophage LambdaCh01 site-specific recombinase phage integrase family	NA
UHGV-0203029_24	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0203029_24	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0203029_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0203029_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0203029_24	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0203029_26	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0203029_26	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0203029_26	UniRef90	UniRef90_A0A373PZX2	XRE family transcriptional regulator	NA
UHGV-0203029_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0203029_26	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0203029_26	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0203029_27	PHROG	phrog_6160	NA	unknown function
UHGV-0203029_28	PHROG	phrog_8781	endolysin	lysis
UHGV-0203029_28	UniRef90	UniRef90_A0A374HXC4	CHAP domain-containing protein	NA
UHGV-0203029_28	eggNOG-mapper	1405498.SSIM_04755	Ami_2	NA
UHGV-0203029_28	Pfam	PF05257	CHAP domain	CHAP
UHGV-0203029_28	COG	COG1388	LysM repeat	NA
UHGV-0203029_28	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0203029_29	UniRef90	UniRef90_UPI0009FBEB5A	phage holin family protein	NA
UHGV-0203029_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0203029_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0203029_30	PHROG	phrog_134	NA	unknown function
UHGV-0203029_30	UniRef90	UniRef90_UPI00189C704B	XkdX family protein	NA
UHGV-0203029_30	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0203029_30	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0203029_30	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0203029_30	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0203029_32	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0203029_32	Structural annotation	PF10651	NA	NA
UHGV-0203029_33	Structural annotation	PF21295, NF012201	NA	NA
UHGV-0203029_34	PHROG	phrog_3558	tail protein	tail
UHGV-0203029_34	UniRef90	UniRef90_A0A373Y1Z4	Prophage_tail domain-containing protein	NA
UHGV-0203029_34	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-0203029_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0203029_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0203029_34	COG	COG4926	Phage-related protein	NA
UHGV-0203029_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0203029_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0203029_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0203029_35	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0203029_36	PHROG	phrog_23464	NA	unknown function
UHGV-0203029_36	UniRef90	UniRef90_A0A1I6EGT7	Phage-related minor tail protein	NA
UHGV-0203029_36	eggNOG-mapper	1211814.CAPG01000074_gene3445	Phage tail tape measure protein TP901	NA
UHGV-0203029_36	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0203029_36	Structural annotation	COG5280	NA	NA
UHGV-0203029_37	eggNOG-mapper	411902.CLOBOL_03872	NA	NA
UHGV-0203029_38	Structural annotation	PF17388	NA	NA
UHGV-0203029_39	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0203029_39	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0203029_39	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0203029_40	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0203029_40	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0203029_40	UniRef90	UniRef90_A0A373VQE6	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0203029_40	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0203029_40	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0203029_40	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-0203029_41	Structural annotation	PF20765	NA	NA
UHGV-0203029_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0203029_42	UniRef90	UniRef90_A0A373Y1Z1	HK97 gp10 family phage protein	NA
UHGV-0203029_42	eggNOG-mapper	411468.CLOSCI_00545	COG NOG18351 non supervised orthologous group	NA
UHGV-0203029_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0203029_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0203029_43	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0203029_43	UniRef90	UniRef90_A0A373XZI9	Phage head-tail adapter protein	NA
UHGV-0203029_43	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0203029_43	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0203029_43	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0203029_43	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0203029_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0203029_44	PHROG	phrog_5223	neck protein	connector
UHGV-0203029_44	UniRef90	UniRef90_A0A174XSK5	NA	NA
UHGV-0203029_44	eggNOG-mapper	1033738.CAEP01000018_gene3674	NA	NA
UHGV-0203029_44	Structural annotation	TIGR01560	NA	NA
UHGV-0203029_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-0203029_45	UniRef90	UniRef90_A0A373Y235	Phage major capsid protein	NA
UHGV-0203029_45	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0203029_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0203029_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0203029_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0203029_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0203029_46	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0203029_46	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0203029_46	UniRef90	UniRef90_A0A1C5SFD0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0203029_46	eggNOG-mapper	626523.GCWU000342_01026	Belongs to the peptidase S14 family	NA
UHGV-0203029_46	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0203029_46	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0203029_46	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0203029_47	PHROG	phrog_12	portal protein	head and packaging
UHGV-0203029_47	UniRef90	UniRef90_A0A373XZJ2	Phage portal protein	NA
UHGV-0203029_47	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-0203029_47	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0203029_47	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0203029_47	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0203029_48	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0203029_48	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0203029_48	UniRef90	UniRef90_A0A356CYE0	N-6 DNA methylase	NA
UHGV-0203029_48	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0203029_48	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0203029_48	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0203029_48	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0203029_48	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0203029_48	Structural annotation	PF02384, PF01420, MF_01872, TIGR00497, COG0286, COG0732	NA	NA
UHGV-0203029_49	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-0203029_49	UniRef90	UniRef90_A0A355S027	Terminase large subunit (Fragment)	NA
UHGV-0203029_49	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0203029_49	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0203029_49	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0203029_49	Structural annotation	PF20441, MF_04145, TIGR01547, COG1783	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0203029	Yes	34,042 bps	44.75%	94.34%	0.9795
UHGV-1542006	No	43,198 bps	44.31%	99.90%	0.9771
UHGV-2165152	No	43,198 bps	44.31%	99.90%	0.9668
UHGV-1529031	No	31,819 bps	44.83%	88.16%	0.9803
UHGV-1188538	No	11,852 bps	44.86%	32.84%	0.9824