vOTU-011570

Overview

vOTU representative UHGV-0205969

No. of genomes 5

Genome length 30,973 bps

Completeness 96.52% (high-quality)

Host Coriobacteriales

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-011570
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 › vSUBFAM-00148 › vGENUS-00251 › vSUBGEN-00191 › vOTU-011570
Host taxonomy	Bacteria › Actinobacteriota › Coriobacteriia › Coriobacteriales
Host range breadth	Order
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0205969
BioSample	NA
Genome length	30,973 bps
CheckV completeness	96.52% (high-quality)
CheckV contamination	0.00%
CDS count	46
CDS density	91.88%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0205969_1	PHROG	phrog_1066	NA	unknown function
UHGV-0205969_1	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0205969_1	Structural annotation	TIGR01558	NA	NA
UHGV-0205969_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0205969_2	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0205969_2	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0205969_3	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0205969_3	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0205969_3	UniRef90	UniRef90_R7DAX0	dUTP diphosphatase	NA
UHGV-0205969_3	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0205969_3	Pfam	PF00692	dUTPase	dUTPase
UHGV-0205969_3	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0205969_3	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0205969_3	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0205969_4	Structural annotation	MF_01326_A, TIGR01080	NA	NA
UHGV-0205969_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0205969_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0205969_5	UniRef90	UniRef90_A0A1Y4GBS3	Single-stranded DNA-binding protein	NA
UHGV-0205969_5	eggNOG-mapper	445975.COLSTE_02172	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0205969_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0205969_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0205969_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0205969_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0205969_5	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0205969_6	PHROG	phrog_21723	NA	unknown function
UHGV-0205969_6	UniRef90	UniRef90_A0A0C2JIH8	30S ribosomal protein S13	NA
UHGV-0205969_6	eggNOG-mapper	469371.Tbis_1359	integration host factor	NA
UHGV-0205969_6	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0205969_6	COG	COG0099	Ribosomal protein S13	NA
UHGV-0205969_6	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0205969_8	KOfam	K14059	int; integrase	NA
UHGV-0205969_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0205969_8	UniRef90	UniRef90_R7D9N8	Site-specific recombinase phage integrase family	NA
UHGV-0205969_8	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0205969_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0205969_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0205969_8	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0205969_11	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0205969_11	UniRef90	UniRef90_UPI000550874E	NA	NA
UHGV-0205969_11	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0205969_11	Pfam	PF11753	NA	DUF3310
UHGV-0205969_12	PHROG	phrog_24658	NA	unknown function
UHGV-0205969_12	UniRef90	UniRef90_R7D8J1	Gp50	NA
UHGV-0205969_13	PHROG	phrog_24189	NA	unknown function
UHGV-0205969_13	UniRef90	UniRef90_R7D7E6	NA	NA
UHGV-0205969_13	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0205969_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0205969_13	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-0205969_16	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-0205969_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0205969_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0205969_19	UniRef90	UniRef90_R7D821	Transcriptional regulator XRE family	NA
UHGV-0205969_19	eggNOG-mapper	411467.BACCAP_00776	Helix-turn-helix domain	NA
UHGV-0205969_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205969_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0205969_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0205969_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0205969_20	UniRef90	UniRef90_R7D7E3	Putative DNA-binding phage protein	NA
UHGV-0205969_20	eggNOG-mapper	1238184.CM001792_gene658	Transcriptional	NA
UHGV-0205969_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205969_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0205969_21	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0205969_21	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0205969_21	UniRef90	UniRef90_R7D9M3	Exonuclease domain-containing protein	NA
UHGV-0205969_21	eggNOG-mapper	428126.CLOSPI_00015	SWIM zinc finger	NA
UHGV-0205969_21	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0205969_21	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0205969_21	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0205969_22	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0205969_22	PHROG	phrog_95	integrase	integration and excision
UHGV-0205969_22	UniRef90	UniRef90_R7DAT4	Resolvase N-terminal domain protein	NA
UHGV-0205969_22	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-0205969_22	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0205969_22	Pfam	PF07508	Recombinase	Recombinase
UHGV-0205969_22	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0205969_22	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0205969_22	Structural annotation	PF00239, NF041201, COG2452	NA	NA
UHGV-0205969_23	KOfam	K07273	acm; lysozyme	NA
UHGV-0205969_23	PHROG	phrog_291	endolysin	lysis
UHGV-0205969_23	UniRef90	UniRef90_A0A1Y4GDT9	LysM domain-containing protein	NA
UHGV-0205969_23	eggNOG-mapper	445975.COLSTE_02142	CW_7 repeat	NA
UHGV-0205969_23	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0205969_23	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0205969_23	Pfam	PF01476	LysM domain	LysM
UHGV-0205969_23	COG	COG1388	LysM repeat	NA
UHGV-0205969_23	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0205969_24	UniRef90	UniRef90_A0A1Y4G4Q3	Peptidase_C39_2 domain-containing protein	NA
UHGV-0205969_24	eggNOG-mapper	1280698.AUJS01000108_gene579	Papain-like cysteine protease AvrRpt2	NA
UHGV-0205969_24	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0205969_24	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0205969_24	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-0205969_25	PHROG	phrog_10091	holin	lysis
UHGV-0205969_25	UniRef90	UniRef90_A0A1Y4G372	Phage holin	NA
UHGV-0205969_25	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-0205969_25	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0205969_25	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0205969_25	COG	COG5546	NA	NA
UHGV-0205969_25	Structural annotation	COG5546	NA	NA
UHGV-0205969_26	eggNOG-mapper	1437605.BACT_0481	NA	NA
UHGV-0205969_27	PHROG	phrog_18593	NA	unknown function
UHGV-0205969_27	UniRef90	UniRef90_B6GDG6	Carbohydrate binding domain protein	NA
UHGV-0205969_27	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0205969_27	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0205969_27	Structural annotation	PF14600	NA	NA
UHGV-0205969_28	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0205969_28	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0205969_28	UniRef90	UniRef90_A0A1Y4G3H0	Reverse transcriptase domain-containing protein	NA
UHGV-0205969_28	eggNOG-mapper	445975.COLSTE_02147	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0205969_28	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0205969_28	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0205969_28	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0205969_28	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0205969_29	eggNOG-mapper	445975.COLSTE_02149	NA	NA
UHGV-0205969_29	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0205969_30	UniRef90	UniRef90_UPI00189DCC7C	NA	NA
UHGV-0205969_30	eggNOG-mapper	445975.COLSTE_02150	NA	NA
UHGV-0205969_30	Pfam	PF19789	NA	DUF6273
UHGV-0205969_30	Structural annotation	PF19789	NA	NA
UHGV-0205969_31	PHROG	phrog_19280	NA	unknown function
UHGV-0205969_31	UniRef90	UniRef90_UPI00189E73EF	BppU family phage baseplate upper protein	NA
UHGV-0205969_31	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-0205969_31	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0205969_31	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0205969_32	eggNOG-mapper	445975.COLSTE_02152	NA	NA
UHGV-0205969_33	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0205969_33	UniRef90	UniRef90_B6GDH3	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0205969_33	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0205969_33	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0205969_33	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0205969_33	COG	COG4926	Phage-related protein	NA
UHGV-0205969_33	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0205969_34	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0205969_34	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-0205969_34	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-0205969_34	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0205969_34	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0205969_34	COG	COG4722	Phage-related protein YomH	NA
UHGV-0205969_34	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0205969_35	PHROG	phrog_23464	NA	unknown function
UHGV-0205969_35	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-0205969_35	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0205969_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0205969_37	Structural annotation	PF12363	NA	NA
UHGV-0205969_38	PHROG	phrog_88	major tail protein	tail
UHGV-0205969_38	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-0205969_38	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-0205969_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0205969_38	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0205969_39	eggNOG-mapper	411473.RUMCAL_01153	NA	NA
UHGV-0205969_39	Structural annotation	PF05657	NA	NA
UHGV-0205969_40	UniRef90	UniRef90_UPI00082989AC	HK97 gp10 family phage protein	NA
UHGV-0205969_40	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0205969_41	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0205969_41	UniRef90	UniRef90_B6GDI0	Putative phage head-tail adaptor	NA
UHGV-0205969_41	eggNOG-mapper	396034.A6XMK0_9CAUD	NA	NA
UHGV-0205969_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0205969_42	PHROG	phrog_5223	neck protein	connector
UHGV-0205969_42	UniRef90	UniRef90_B6GDI1	Putative phage DNA packaging protein	NA
UHGV-0205969_42	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-0205969_42	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0205969_42	Structural annotation	TIGR01560	NA	NA
UHGV-0205969_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0205969_43	UniRef90	UniRef90_A0A1Y4GBR5	Phage major capsid protein	NA
UHGV-0205969_43	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0205969_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0205969_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0205969_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0205969_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0205969_44	KOfam	K06904	NA	NA
UHGV-0205969_44	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0205969_44	UniRef90	UniRef90_UPI00189D4AF0	HK97 family phage prohead protease	NA
UHGV-0205969_44	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0205969_44	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0205969_44	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0205969_44	COG	COG3740	Phage head maturation protease	NA
UHGV-0205969_44	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0205969_45	PHROG	phrog_12	portal protein	head and packaging
UHGV-0205969_45	UniRef90	UniRef90_A0A4S2F4F4	Phage portal protein	NA
UHGV-0205969_45	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0205969_45	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0205969_45	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0205969_45	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0205969_46	PHROG	phrog_7331	terminase large subunit	head and packaging
UHGV-0205969_46	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0205969_46	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0205969_46	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0205969	Yes	30,973 bps	58.34%	96.52%	0.9772
UHGV-0261020	No	33,993 bps	58.16%	99.90%	0.9770
UHGV-1832523	No	15,833 bps	56.51%	49.17%	0.9653
UHGV-0050523	No	15,279 bps	56.57%	47.45%	0.9342
UHGV-0133779	No	10,369 bps	59.45%	32.22%	0.9825