vOTU-013536

Overview

No. of genomes 23

Genome length 16,457 bps

Completeness 99.90% (high-quality)

Host Staphylococcus hominis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-013536
Number of genomes	23
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes › Salasmaviridae
Taxonomy (UHGV)	vFAM-00015 › vSUBFAM-00176 › vGENUS-03656 › vSUBGEN-10219 › vOTU-013536
Host taxonomy	Bacteria › Firmicutes › Bacilli › Staphylococcales › Staphylococcaceae › Staphylococcus › Staphylococcus hominis
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1488242
BioSample	NA
Genome length	16,457 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	19
CDS density	85.14%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1488242_3	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1488242_3	UniRef90	UniRef90_Q37892	Proximal tail tube connector protein	NA
UHGV-1488242_3	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-1488242_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-1488242_4	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-1488242_4	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-1488242_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1488242_4	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1488242_5	PHROG	phrog_2248	tail protein	tail
UHGV-1488242_5	UniRef90	UniRef90_A0A843HKP3	Caud_tail_N domain-containing protein	NA
UHGV-1488242_5	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-1488242_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1488242_5	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1488242_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1488242_6	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1488242_6	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-1488242_6	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-1488242_6	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1488242_9	UniRef90	UniRef90_A0A843HN93	Amidase_5 domain-containing protein	NA
UHGV-1488242_9	eggNOG-mapper	632245.CLP_1284	NlpC/P60 family	NA
UHGV-1488242_9	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1488242_9	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1488242_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1488242_9	Structural annotation	PF18013	NA	NA
UHGV-1488242_10	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1488242_10	PHROG	phrog_435	endolysin	lysis
UHGV-1488242_10	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1488242_10	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1488242_10	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1488242_10	Pfam	PF05036	SPOR domain	SPOR
UHGV-1488242_10	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1488242_10	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1488242_11	PHROG	phrog_199	holin	lysis
UHGV-1488242_11	UniRef90	UniRef90_A0A843HKJ8	Phage holin family protein	NA
UHGV-1488242_11	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-1488242_11	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1488242_11	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1488242_11	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1488242_12	PHROG	phrog_2150	terminase	head and packaging
UHGV-1488242_12	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-1488242_12	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1488242_12	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1488242_12	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1488242_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1488242_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1488242_14	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-1488242_14	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-1488242_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1488242_14	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1488242_16	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-1488242_16	Structural annotation	PF17427	NA	NA
UHGV-1488242_17	Structural annotation	PF17548	NA	NA
UHGV-1488242_18	Structural annotation	PF07865	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1488242	Yes	16,457 bps	33.28%	99.90%	0.9722
UHGV-1501918	No	15,846 bps	33.50%	99.90%	0.9694
UHGV-1505498	No	15,989 bps	33.51%	81.12%	0.9716
UHGV-0042263	No	15,888 bps	33.74%	80.48%	0.9739
UHGV-1499906	No	15,888 bps	33.74%	80.48%	0.9727
UHGV-1503658	No	15,888 bps	33.74%	80.48%	0.9739
UHGV-1416909	No	15,680 bps	33.44%	79.56%	0.9752
UHGV-0211238	No	15,635 bps	33.74%	79.40%	0.9713
UHGV-1931206	No	15,640 bps	33.46%	79.36%	0.9695
UHGV-2240581	No	15,491 bps	33.51%	78.60%	0.9715
UHGV-1867372	No	15,375 bps	33.74%	78.01%	0.9766
UHGV-0120167	No	15,368 bps	33.68%	77.90%	0.9768
UHGV-1457331	No	15,282 bps	33.84%	77.55%	0.9735
UHGV-2040413	No	15,239 bps	34.02%	77.34%	0.9743
UHGV-1454957	No	15,234 bps	33.92%	77.30%	0.9746
UHGV-1919060	No	15,230 bps	33.93%	77.28%	0.9687
UHGV-2105094	No	14,931 bps	33.80%	76.38%	0.9757
UHGV-0873366	No	14,720 bps	33.91%	74.53%	0.9756
UHGV-2189162	No	14,509 bps	33.84%	73.46%	0.9770
UHGV-0785920	No	15,869 bps	33.55%	72.06%	0.9731
UHGV-2225363	No	12,372 bps	34.47%	62.70%	0.9759
UHGV-1410124	No	10,523 bps	35.25%	58.27%	0.9782
UHGV-0380892	No	10,257 bps	33.64%	52.29%	0.9774