vOTU-013548

Overview

vOTU representative UHGV-1925432

No. of genomes 3

Genome length 42,689 bps

Completeness 99.25% (high-quality)

Host CAG-239

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-013548
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00178 › vSUBFAM-02478 › vGENUS-03031 › vSUBGEN-04007 › vOTU-013548
Host taxonomy	Bacteria › Proteobacteria › Alphaproteobacteria › RF32 › CAG-239
Host range breadth	Family
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1925432
BioSample	NA
Genome length	42,689 bps
CheckV completeness	99.25% (high-quality)
CheckV contamination	0.00%
CDS count	67
CDS density	90.84%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1925432_3	KOfam	K19613	SHOC2, SUR8; leucine-rich repeat protein SHOC2	NA
UHGV-1925432_3	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-1925432_5	KOfam	K02313	dnaA; chromosomal replication initiator protein	NA
UHGV-1925432_5	eggNOG-mapper	1380346.JNIH01000032_gene1154	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids	NA
UHGV-1925432_5	Pfam	PF08299	Bacterial dnaA protein helix-turn-helix	Bac_DnaA_C
UHGV-1925432_5	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1925432_5	COG	COG0593	Chromosomal replication initiation ATPase DnaA	NA
UHGV-1925432_6	PHROG	phrog_5558	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1925432_8	Structural annotation	PF14282	NA	NA
UHGV-1925432_9	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1925432_9	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1925432_9	UniRef90	UniRef90_A0A7C6P2G6	Recombinase	NA
UHGV-1925432_9	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-1925432_9	Pfam	PF03837	RecT family	RecT
UHGV-1925432_9	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1925432_9	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1925432_9	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1925432_11	PHROG	phrog_824	NA	unknown function
UHGV-1925432_11	UniRef90	UniRef90_A5ZE96	VRR-NUC domain protein	NA
UHGV-1925432_11	eggNOG-mapper	411901.BACCAC_01208	NA	NA
UHGV-1925432_11	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1925432_12	PHROG	phrog_16122	virion structural protein	head and packaging
UHGV-1925432_12	eggNOG-mapper	913865.DOT_2883	exo-alpha-(2->6)-sialidase activity	NA
UHGV-1925432_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1925432_13	PHROG	phrog_587	structural protein	head and packaging
UHGV-1925432_13	Pfam	PF11041	NA	DUF2612
UHGV-1925432_13	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-1925432_14	PHROG	phrog_6	baseplate protein	tail
UHGV-1925432_14	UniRef90	UniRef90_A0A353T659	Baseplate_J domain-containing protein	NA
UHGV-1925432_14	eggNOG-mapper	712898.Pvag_1689	homolog of phage Mu protein gp47	NA
UHGV-1925432_14	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1925432_14	COG	COG3299	NA	NA
UHGV-1925432_14	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1925432_15	PHROG	phrog_120	baseplate protein	tail
UHGV-1925432_15	UniRef90	UniRef90_A0A0H3FH61	Putative bacteriophage protein	NA
UHGV-1925432_15	eggNOG-mapper	741091.Rahaq_5012	NA	NA
UHGV-1925432_16	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1925432_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1925432_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1925432_17	UniRef90	UniRef90_A0A3B9YW78	Replicative DNA helicase	NA
UHGV-1925432_17	eggNOG-mapper	1353537.TP2_02695	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-1925432_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1925432_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-1925432_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1925432_18	UniRef90	UniRef90_A0A7C9G7N0	Gp138_N domain-containing protein	NA
UHGV-1925432_18	eggNOG-mapper	563192.HMPREF0179_00191	Baseplate assembly protein	NA
UHGV-1925432_18	Pfam	PF18352	NA	Gp138_N
UHGV-1925432_18	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-1925432_18	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-1925432_19	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-1925432_19	eggNOG-mapper	1220714.L7TK18_9CAUD	NA	NA
UHGV-1925432_19	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1925432_21	PHROG	phrog_817	tail fiber protein	tail
UHGV-1925432_21	eggNOG-mapper	395019.Bmul_1813	NA	NA
UHGV-1925432_21	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-1925432_21	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-1925432_22	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-1925432_22	UniRef90	UniRef90_A0A3D1C5V6	PhageMin_Tail domain-containing protein	NA
UHGV-1925432_22	eggNOG-mapper	640511.BC1002_6556	phage tail tape measure protein	NA
UHGV-1925432_22	COG	COG5412	Phage-related protein	NA
UHGV-1925432_23	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-1925432_24	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-1925432_24	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-1925432_25	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-1925432_25	UniRef90	UniRef90_UPI001642065D	NA	NA
UHGV-1925432_25	eggNOG-mapper	563192.HMPREF0179_00180	NA	NA
UHGV-1925432_25	Pfam	PF11863	NA	DUF3383
UHGV-1925432_25	Structural annotation	PF11863, COG4386	NA	NA
UHGV-1925432_26	Structural annotation	PF05657	NA	NA
UHGV-1925432_28	PHROG	phrog_222	tail protein	tail
UHGV-1925432_28	eggNOG-mapper	1392838.AWNM01000071_gene627	NA	NA
UHGV-1925432_29	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-1925432_29	Pfam	PF13262	NA	DUF4054
UHGV-1925432_29	Structural annotation	PF13262	NA	NA
UHGV-1925432_31	PHROG	phrog_264	major head protein	head and packaging
UHGV-1925432_31	UniRef90	UniRef90_A0A7C9G8W4	NA	NA
UHGV-1925432_31	eggNOG-mapper	563192.HMPREF0179_00174	NA	NA
UHGV-1925432_31	Pfam	PF09950	NA	DUF2184
UHGV-1925432_31	COG	COG4834	NA	NA
UHGV-1925432_31	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-1925432_32	PHROG	phrog_28344	NA	unknown function
UHGV-1925432_33	KOfam	K09960	NA	NA
UHGV-1925432_33	PHROG	phrog_530	head maturation protease	head and packaging
UHGV-1925432_33	eggNOG-mapper	1509403.GW12_00750	NA	NA
UHGV-1925432_33	Pfam	PF09979	NA	DUF2213
UHGV-1925432_33	COG	COG3566	NA	NA
UHGV-1925432_33	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-1925432_35	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-1925432_35	UniRef90	UniRef90_A0A843HS31	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1925432_35	eggNOG-mapper	395019.Bmul_1850	NA	NA
UHGV-1925432_35	Pfam	PF12684	NA	DUF3799
UHGV-1925432_41	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1925432_41	PHROG	phrog_7	endolysin	lysis
UHGV-1925432_41	UniRef90	UniRef90_A0A1J0LP19	Lysozyme	NA
UHGV-1925432_41	eggNOG-mapper	880070.Cycma_0230	Phage lysozyme	NA
UHGV-1925432_41	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1925432_41	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1925432_41	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-1925432_42	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1925432_42	Pfam	PF00075	RNase H	RNase_H
UHGV-1925432_49	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-1925432_49	UniRef90	UniRef90_E5Y1W2	SPP1 gp7 family phage head morphogenesis protein	NA
UHGV-1925432_49	eggNOG-mapper	563192.HMPREF0179_00171	Portal protein	NA
UHGV-1925432_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1925432_49	COG	COG2369	NA	NA
UHGV-1925432_50	KOfam	K09961	NA	NA
UHGV-1925432_50	PHROG	phrog_146	portal protein	head and packaging
UHGV-1925432_50	UniRef90	UniRef90_E5Y1W1	HI1409 family phage-associated protein	NA
UHGV-1925432_50	eggNOG-mapper	563192.HMPREF0179_00170	Phage-associated protein, HI1409 family	NA
UHGV-1925432_50	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-1925432_50	COG	COG3567	NA	NA
UHGV-1925432_50	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-1925432_51	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1925432_51	UniRef90	UniRef90_A0A843HLI4	Phage terminase large subunit	NA
UHGV-1925432_51	eggNOG-mapper	563192.HMPREF0179_00169	Terminase RNaseH-like domain	NA
UHGV-1925432_51	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1925432_51	COG	COG5362	Phage terminase large subunit	NA
UHGV-1925432_51	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1925432_52	PHROG	phrog_2412	NA	unknown function
UHGV-1925432_52	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-1925432_52	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-1925432_53	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1925432_53	UniRef90	UniRef90_E4KQJ1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1925432_53	eggNOG-mapper	1688.BCUN_0619	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1925432_53	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-1925432_53	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1925432_53	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-1925432_54	Structural annotation	PF04447, COG1694	NA	NA
UHGV-1925432_55	KOfam	K24217	mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]	NA
UHGV-1925432_55	PHROG	phrog_3810	acetyltransferase	other
UHGV-1925432_55	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1925432_55	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1925432_56	Structural annotation	PF00210, MF_01441, NF006975, COG0783	NA	NA
UHGV-1925432_57	Structural annotation	PF15731, NF041951, COG2944	NA	NA
UHGV-1925432_58	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1925432_58	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1925432_58	UniRef90	UniRef90_A0A1H4YUP8	Cytosine-specific methyltransferase	NA
UHGV-1925432_58	eggNOG-mapper	620914.JH621248_gene3074	C-5 cytosine-specific DNA methylase	NA
UHGV-1925432_58	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1925432_58	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1925432_58	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1925432_58	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1925432_58	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1925432_61	NCBIFam	TIGR02098.1	MJ0042-type zinc finger domain-containing protein	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1925432	Yes	42,689 bps	43.25%	99.25%	0.9639
UHGV-1489885	No	39,157 bps	43.35%	91.04%	0.9636
UHGV-0208634	No	32,321 bps	43.47%	75.15%	0.9683