vOTU-014346

Overview

vOTU representative UHGV-2019691

No. of genomes 7

Genome length 38,454 bps

Completeness 96.15% (high-quality)

Host Lacticaseibacillus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-014346
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00011 › vSUBFAM-00315 › vGENUS-16012 › vSUBGEN-28423 › vOTU-014346
Host taxonomy	Bacteria › Firmicutes › Bacilli › Lactobacillales › Lactobacillaceae › Lacticaseibacillus
Host range breadth	Genus
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2019691
BioSample	SAMEA2579938
Genome length	38,454 bps
CheckV completeness	96.15% (high-quality)
CheckV contamination	0.00%
CDS count	57
CDS density	91.29%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2019691_1	KOfam	K14059	int; integrase	NA
UHGV-2019691_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2019691_1	UniRef90	UniRef90_S2NLV6	Site-specific recombinase, phage integrase family	NA
UHGV-2019691_1	eggNOG-mapper	543734.LCABL_12880	Pfam:Integrase_AP2	NA
UHGV-2019691_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2019691_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2019691_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2019691_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2019691_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2019691_2	PHROG	phrog_10368	NA	unknown function
UHGV-2019691_2	eggNOG-mapper	543734.LCABL_12910	NA	NA
UHGV-2019691_3	PHROG	phrog_12237	NA	unknown function
UHGV-2019691_3	UniRef90	UniRef90_Q036Z1	Pyridoxamine 5'-phosphate oxidase	NA
UHGV-2019691_3	eggNOG-mapper	543734.LCABL_12920	Pyridoxamine 5'-phosphate oxidase	NA
UHGV-2019691_3	Pfam	PF01243	Pyridoxamine 5'-phosphate oxidase	Putative_PNPOx
UHGV-2019691_3	COG	COG3871	General stress protein 26 (function unknown)	NA
UHGV-2019691_5	PHROG	phrog_19381	NA	unknown function
UHGV-2019691_5	eggNOG-mapper	1121912.AUHD01000026_gene307	NA	NA
UHGV-2019691_6	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-2019691_6	UniRef90	UniRef90_A0A179YAS6	Phage superinfection immunity protein	NA
UHGV-2019691_6	eggNOG-mapper	568703.LGG_01093	NA	NA
UHGV-2019691_6	Pfam	PF12978	NA	DUF3862
UHGV-2019691_6	Structural annotation	PF12978	NA	NA
UHGV-2019691_7	PHROG	phrog_87	metallo-protease	other
UHGV-2019691_7	UniRef90	UniRef90_K0MUT7	Peptidase_M78 domain-containing protein	NA
UHGV-2019691_7	eggNOG-mapper	1423732.BALS01000070_gene2074	Zn peptidase	NA
UHGV-2019691_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2019691_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2019691_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2019691_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2019691_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2019691_8	UniRef90	UniRef90_A0A0P0IZG9	Repressor	NA
UHGV-2019691_8	eggNOG-mapper	568703.LGG_01095	Helix-turn-helix domain	NA
UHGV-2019691_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2019691_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2019691_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2019691_8	Structural annotation	PF12844, MF_00535, NF041575, COG1396	NA	NA
UHGV-2019691_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2019691_9	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2019691_9	UniRef90	UniRef90_K8Q929	HTH cro/C1-type domain-containing protein	NA
UHGV-2019691_9	eggNOG-mapper	568703.LGG_01096	Helix-turn-helix domain	NA
UHGV-2019691_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2019691_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2019691_12	PHROG	phrog_16424	NA	unknown function
UHGV-2019691_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2019691_13	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2019691_13	UniRef90	UniRef90_K8Q935	Phage anti-repressor protein	NA
UHGV-2019691_13	eggNOG-mapper	797515.HMPREF9103_02413	AntA/AntB antirepressor	NA
UHGV-2019691_13	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2019691_13	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2019691_13	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2019691_13	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-2019691_14	PHROG	phrog_1124	transcriptional regulator	transcription regulation
UHGV-2019691_14	UniRef90	UniRef90_UPI000F77BC88	helix-turn-helix domain-containing protein	NA
UHGV-2019691_14	eggNOG-mapper	543734.LCABL_13020	NA	NA
UHGV-2019691_14	Structural annotation	PF01381, TIGR02607, COG1476	NA	NA
UHGV-2019691_15	UniRef90	UniRef90_A0A5P5ZAS9	DNA-binding protein	NA
UHGV-2019691_16	PHROG	phrog_19165	NA	unknown function
UHGV-2019691_17	PHROG	phrog_18888	NA	unknown function
UHGV-2019691_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2019691_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2019691_18	UniRef90	UniRef90_A0A179YAX0	Recombinase RecT	NA
UHGV-2019691_18	eggNOG-mapper	568703.LGG_01104	RecT family	NA
UHGV-2019691_18	Pfam	PF03837	RecT family	RecT
UHGV-2019691_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2019691_18	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2019691_19	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2019691_19	UniRef90	UniRef90_A0A806LFQ5	NA	NA
UHGV-2019691_19	eggNOG-mapper	568703.LGG_01105	NA	NA
UHGV-2019691_19	Pfam	PF12684	NA	DUF3799
UHGV-2019691_19	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2019691_19	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-2019691_20	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2019691_20	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2019691_20	UniRef90	UniRef90_K6RYH5	DnaD domain-containing protein	NA
UHGV-2019691_20	eggNOG-mapper	543734.LCABL_13070	Replication initiation and membrane attachment	NA
UHGV-2019691_20	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2019691_20	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2019691_20	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2019691_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2019691_20	Structural annotation	PF14297	NA	NA
UHGV-2019691_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2019691_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2019691_21	UniRef90	UniRef90_K6RXY0	Helicase loader	NA
UHGV-2019691_21	eggNOG-mapper	1423816.BACQ01000027_gene964	IstB-like ATP binding protein	NA
UHGV-2019691_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2019691_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2019691_21	Structural annotation	PF01695, MF_01509, NF005304, COG1484	NA	NA
UHGV-2019691_22	PHROG	phrog_9623	NA	unknown function
UHGV-2019691_23	PHROG	phrog_4378	NA	unknown function
UHGV-2019691_23	UniRef90	UniRef90_A0A179YD18	NA	NA
UHGV-2019691_23	eggNOG-mapper	568703.LGG_01110	NA	NA
UHGV-2019691_23	Structural annotation	PF09953, PF19575	NA	NA
UHGV-2019691_24	PHROG	phrog_5418	NA	unknown function
UHGV-2019691_24	eggNOG-mapper	543734.LCABL_13130	NA	NA
UHGV-2019691_25	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2019691_25	UniRef90	UniRef90_C2FHC4	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-2019691_25	eggNOG-mapper	39103.U5U799_9CAUD	magnesium ion binding	NA
UHGV-2019691_25	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2019691_27	PHROG	phrog_5222	NA	unknown function
UHGV-2019691_27	UniRef90	UniRef90_K6RXX5	NA	NA
UHGV-2019691_28	PHROG	phrog_21125	NA	unknown function
UHGV-2019691_29	PHROG	phrog_26136	NA	unknown function
UHGV-2019691_30	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-2019691_30	UniRef90	UniRef90_A0A0E3D1B0	Transcriptional regulator	NA
UHGV-2019691_30	eggNOG-mapper	568703.LGG_01120	NA	NA
UHGV-2019691_31	PHROG	phrog_8187	NA	unknown function
UHGV-2019691_31	eggNOG-mapper	1423724.BAMM01000012_gene1372	NA	NA
UHGV-2019691_31	PADLOC	AbiN	AbiN	Abi
UHGV-2019691_33	PHROG	phrog_704	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2019691_33	UniRef90	UniRef90_Q037C7	NA	NA
UHGV-2019691_33	eggNOG-mapper	543734.LCABL_13210	GcrA cell cycle regulator	NA
UHGV-2019691_33	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-2019691_33	Structural annotation	PF12850, MF_00905, NF008359, COG2908	NA	NA
UHGV-2019691_34	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2019691_34	UniRef90	UniRef90_S2N582	Phage terminase, small subunit	NA
UHGV-2019691_34	eggNOG-mapper	1423775.BAMN01000025_gene2809	transposase activity	NA
UHGV-2019691_34	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2019691_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2019691_35	PHROG	phrog_10250	NA	unknown function
UHGV-2019691_35	UniRef90	UniRef90_A0A826HMQ6	Terminase_6C domain-containing protein	NA
UHGV-2019691_35	eggNOG-mapper	543734.LCABL_13240	Terminase-like family	NA
UHGV-2019691_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2019691_35	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2019691_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2019691_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-2019691_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2019691_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-2019691_36	UniRef90	UniRef90_A0A0C9PZ32	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2019691_36	eggNOG-mapper	543734.LCABL_13250	Phage portal protein	NA
UHGV-2019691_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2019691_36	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2019691_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2019691_37	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2019691_37	UniRef90	UniRef90_A0A0P0I7N0	Phage_Mu_F domain-containing protein	NA
UHGV-2019691_37	eggNOG-mapper	543734.LCABL_13260	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2019691_37	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2019691_37	COG	COG2369	NA	NA
UHGV-2019691_37	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-2019691_38	PHROG	phrog_1374	NA	unknown function
UHGV-2019691_38	eggNOG-mapper	1519439.JPJG01000059_gene1913	NA	NA
UHGV-2019691_39	PHROG	phrog_1233	NA	unknown function
UHGV-2019691_39	UniRef90	UniRef90_Q037D3	NA	NA
UHGV-2019691_39	eggNOG-mapper	588581.Cpap_1518	NA	NA
UHGV-2019691_39	Structural annotation	PF06114	NA	NA
UHGV-2019691_40	PHROG	phrog_12216	NA	unknown function
UHGV-2019691_41	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2019691_41	UniRef90	UniRef90_A0A180B1V7	NA	NA
UHGV-2019691_41	eggNOG-mapper	568703.LGG_01128	NA	NA
UHGV-2019691_41	Pfam	PF14265	NA	DUF4355
UHGV-2019691_41	Structural annotation	PF14265	NA	NA
UHGV-2019691_42	PHROG	phrog_909	major head protein	head and packaging
UHGV-2019691_42	UniRef90	UniRef90_Q037D6	NA	NA
UHGV-2019691_42	eggNOG-mapper	543734.LCABL_13280	NA	NA
UHGV-2019691_42	Structural annotation	PF02924	NA	NA
UHGV-2019691_43	PHROG	phrog_29	major head protein	head and packaging
UHGV-2019691_43	UniRef90	UniRef90_UPI001E3947D5	major capsid protein	NA
UHGV-2019691_43	eggNOG-mapper	543734.LCABL_13300	Phage major capsid protein E	NA
UHGV-2019691_43	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2019691_43	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-2019691_44	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2019691_44	UniRef90	UniRef90_Q037E0	NA	NA
UHGV-2019691_44	eggNOG-mapper	543734.LCABL_13330	Phage gp6-like head-tail connector protein	NA
UHGV-2019691_44	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2019691_44	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2019691_45	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2019691_45	UniRef90	UniRef90_A0A179Y7E7	NA	NA
UHGV-2019691_45	eggNOG-mapper	568703.LGG_01131	NA	NA
UHGV-2019691_45	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2019691_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2019691_46	UniRef90	UniRef90_UPI001F389DB7	phage tail protein	NA
UHGV-2019691_46	eggNOG-mapper	543734.LCABL_13350	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2019691_46	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2019691_47	PHROG	phrog_176	tail terminator	connector
UHGV-2019691_47	UniRef90	UniRef90_Q037E3	Phage major structural protein	NA
UHGV-2019691_47	eggNOG-mapper	543734.LCABL_13360	NA	NA
UHGV-2019691_47	Structural annotation	PF11367	NA	NA
UHGV-2019691_48	PHROG	phrog_238	major tail protein	tail
UHGV-2019691_48	UniRef90	UniRef90_S2N589	Major tail protein	NA
UHGV-2019691_48	eggNOG-mapper	543734.LCABL_13370	Phage tail tube protein	NA
UHGV-2019691_48	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2019691_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2019691_49	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2019691_49	UniRef90	UniRef90_A0A179YBW8	NA	NA
UHGV-2019691_49	eggNOG-mapper	568703.LGG_01135	Phage tail assembly chaperone protein, TAC	NA
UHGV-2019691_49	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2019691_49	Structural annotation	PF12363	NA	NA
UHGV-2019691_50	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2019691_50	UniRef90	UniRef90_A0A179YA89	NA	NA
UHGV-2019691_50	eggNOG-mapper	568703.LGG_01136	NA	NA
UHGV-2019691_51	PHROG	phrog_1204	tail protein	tail
UHGV-2019691_51	UniRef90	UniRef90_S2NM47	TMP_3 domain-containing protein	NA
UHGV-2019691_51	eggNOG-mapper	568703.LGG_01137	phage tail tape measure protein	NA
UHGV-2019691_51	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2019691_51	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2019691_51	COG	COG5412	Phage-related protein	NA
UHGV-2019691_51	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2019691_52	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2019691_52	UniRef90	UniRef90_UPI00034370E7	phage tail family protein	NA
UHGV-2019691_52	eggNOG-mapper	1423816.BACQ01000026_gene932	Phage tail protein	NA
UHGV-2019691_52	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2019691_52	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2019691_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-2019691_52	Structural annotation	PF05709, PF03388, TIGR01633, NF041449, NF033675, COG4722, COG3506	NA	NA
UHGV-2019691_53	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2019691_53	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-2019691_53	UniRef90	UniRef90_UPI00076058A9	phage tail protein	NA
UHGV-2019691_53	eggNOG-mapper	1423816.BACQ01000026_gene931	cellulase activity	NA
UHGV-2019691_53	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2019691_53	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-2019691_53	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2019691_53	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2019691_53	Structural annotation	PF14594, TIGR01665, COG3500	NA	NA
UHGV-2019691_54	PHROG	phrog_4573	NA	unknown function
UHGV-2019691_54	UniRef90	UniRef90_A0A0E2BLW9	Putative phage protein	NA
UHGV-2019691_54	eggNOG-mapper	146269.A8YQK2_9CAUD	NA	NA
UHGV-2019691_54	Structural annotation	PF11192	NA	NA
UHGV-2019691_55	PHROG	phrog_4105	NA	unknown function
UHGV-2019691_55	eggNOG-mapper	543734.LCABL_13450	NA	NA
UHGV-2019691_56	PHROG	phrog_10091	holin	lysis
UHGV-2019691_56	UniRef90	UniRef90_A0A0E2BMM9	Phage holin	NA
UHGV-2019691_56	eggNOG-mapper	568703.LGG_01142	Bacteriophage holin	NA
UHGV-2019691_56	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2019691_56	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2019691_56	COG	COG5546	NA	NA
UHGV-2019691_57	PHROG	phrog_291	endolysin	lysis
UHGV-2019691_57	UniRef90	UniRef90_A0A853KG25	1,4-beta-N-acetylmuramidase (Fragment)	NA
UHGV-2019691_57	eggNOG-mapper	543734.LCABL_13470	Glycosyl hydrolases family 25	NA
UHGV-2019691_57	COG	COG1388	LysM repeat	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2019691	Yes	38,454 bps	45.17%	96.15%	0.9743
UHGV-0076548	No	41,632 bps	45.08%	99.90%	0.9735
UHGV-1698684	No	18,755 bps	45.74%	47.32%	0.9825
UHGV-1956506	No	16,435 bps	46.13%	41.60%	0.9815
UHGV-1802341	No	15,795 bps	46.18%	39.97%	0.9816
UHGV-1650941	No	14,141 bps	46.15%	35.62%	0.9822
UHGV-1588522	No	11,774 bps	46.34%	29.64%	0.9826