vOTU-014401

Overview

vOTU representative UHGV-2039471

No. of genomes 3

Genome length 32,393 bps

Completeness 91.65% (high-quality)

Host Gemmiger qucibialis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-014401
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 › vSUBFAM-00313 › vGENUS-20186 › vSUBGEN-39585 › vOTU-014401
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Gemmiger › Gemmiger qucibialis
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2039471
BioSample	NA
Genome length	32,393 bps
CheckV completeness	91.65% (high-quality)
CheckV contamination	0.00%
CDS count	43
CDS density	91.66%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2039471_1	UniRef90	UniRef90_A0A356AYT2	Peptidase_M56 domain-containing protein (Fragment)	NA
UHGV-2039471_1	eggNOG-mapper	622312.ROSEINA2194_02935	NA	NA
UHGV-2039471_2	PHROG	phrog_11138	NA	unknown function
UHGV-2039471_2	UniRef90	UniRef90_A0A417S3Z9	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2039471_2	eggNOG-mapper	693746.OBV_32240	NA	NA
UHGV-2039471_2	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2039471_2	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2039471_2	Structural annotation	PF08281, MF_00962, TIGR02479, COG1595	NA	NA
UHGV-2039471_3	eggNOG-mapper	397288.C806_02294	NA	NA
UHGV-2039471_4	eggNOG-mapper	397288.C806_02295	NA	NA
UHGV-2039471_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2039471_5	PHROG	phrog_95	integrase	integration and excision
UHGV-2039471_5	UniRef90	UniRef90_A0A1C5TA75	DNA-invertase hin	NA
UHGV-2039471_5	eggNOG-mapper	397288.C806_02296	Recombinase zinc beta ribbon domain	NA
UHGV-2039471_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2039471_5	Pfam	PF07508	Recombinase	Recombinase
UHGV-2039471_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2039471_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2039471_5	Structural annotation	PF07508, NF041201	NA	NA
UHGV-2039471_6	PHROG	phrog_5783	NA	unknown function
UHGV-2039471_6	UniRef90	UniRef90_A0A6N8H308	NYN domain-containing protein	NA
UHGV-2039471_6	eggNOG-mapper	665956.HMPREF1032_03590	NYN domain	NA
UHGV-2039471_6	Pfam	PF01936	NYN domain	NYN
UHGV-2039471_6	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2039471_6	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-2039471_7	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2039471_7	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2039471_7	UniRef90	UniRef90_A0A1Y3SB26	Exonuclease domain-containing protein	NA
UHGV-2039471_7	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-2039471_7	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2039471_7	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2039471_7	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2039471_7	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-2039471_8	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2039471_8	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2039471_8	UniRef90	UniRef90_A0A1Q6T3E1	HTH cro/C1-type domain-containing protein	NA
UHGV-2039471_8	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-2039471_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2039471_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2039471_8	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2039471_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2039471_8	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2039471_9	UniRef90	UniRef90_A0A1Y3WR65	Transcriptional regulator	NA
UHGV-2039471_9	eggNOG-mapper	1111454.HMPREF1250_1029	Helix-turn-helix XRE-family like proteins	NA
UHGV-2039471_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2039471_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2039471_11	Structural annotation	COG2005	NA	NA
UHGV-2039471_13	PHROG	phrog_10280	NA	unknown function
UHGV-2039471_13	eggNOG-mapper	742738.HMPREF9460_02068	NA	NA
UHGV-2039471_14	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2039471_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2039471_15	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-2039471_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2039471_16	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-2039471_16	Structural annotation	PF04606, NF007241	NA	NA
UHGV-2039471_17	PHROG	phrog_7566	NA	unknown function
UHGV-2039471_17	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-2039471_18	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2039471_18	UniRef90	UniRef90_UPI0015C5B39D	replication terminator protein	NA
UHGV-2039471_18	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-2039471_19	PHROG	phrog_1029	NA	unknown function
UHGV-2039471_19	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-2039471_19	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2039471_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2039471_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2039471_20	UniRef90	UniRef90_A0A6N8H0I4	Single-stranded DNA-binding protein	NA
UHGV-2039471_20	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-2039471_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2039471_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2039471_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2039471_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2039471_20	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2039471_21	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2039471_21	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-2039471_21	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-2039471_21	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2039471_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2039471_21	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-2039471_22	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2039471_22	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2039471_22	UniRef90	UniRef90_A0A6N8GZX5	DNA helicase	NA
UHGV-2039471_22	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-2039471_22	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2039471_22	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2039471_22	COG	COG0305	Replicative DNA helicase	NA
UHGV-2039471_22	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2039471_23	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2039471_23	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2039471_23	UniRef90	UniRef90_A0A6N8H6J9	ParA family protein	NA
UHGV-2039471_23	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-2039471_23	Pfam	PF13614	AAA domain	AAA_31
UHGV-2039471_23	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2039471_23	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2039471_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2039471_24	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2039471_24	UniRef90	UniRef90_A0A6N8H6R0	ParB domain-containing protein	NA
UHGV-2039471_24	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-2039471_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2039471_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2039471_24	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2039471_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2039471_26	UniRef90	UniRef90_A0A6N8H4L3	Sigma70_r4 domain-containing protein	NA
UHGV-2039471_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2039471_26	Structural annotation	PF04545, TIGR02984	NA	NA
UHGV-2039471_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2039471_27	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-2039471_27	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-2039471_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2039471_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2039471_28	PHROG	phrog_1066	NA	unknown function
UHGV-2039471_28	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-2039471_28	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2039471_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2039471_29	UniRef90	UniRef90_A0A3B8TYP9	Terminase large subunit	NA
UHGV-2039471_29	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-2039471_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2039471_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2039471_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2039471_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2039471_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-2039471_30	UniRef90	UniRef90_A0A3B8U1I5	Phage portal protein	NA
UHGV-2039471_30	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-2039471_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2039471_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2039471_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2039471_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2039471_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2039471_31	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-2039471_31	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-2039471_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2039471_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2039471_31	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2039471_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-2039471_32	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-2039471_32	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-2039471_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2039471_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2039471_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2039471_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2039471_33	PHROG	phrog_5223	neck protein	connector
UHGV-2039471_33	UniRef90	UniRef90_A0A3B8U278	DNA-packaging protein	NA
UHGV-2039471_33	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-2039471_33	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2039471_33	Structural annotation	TIGR01560	NA	NA
UHGV-2039471_34	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2039471_34	UniRef90	UniRef90_D1PND3	Putative phage head-tail adaptor	NA
UHGV-2039471_34	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-2039471_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2039471_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2039471_35	UniRef90	UniRef90_UPI0019581735	HK97 gp10 family phage protein	NA
UHGV-2039471_35	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-2039471_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2039471_35	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2039471_36	PHROG	phrog_78	tail terminator	connector
UHGV-2039471_36	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-2039471_36	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-2039471_36	Structural annotation	PF20765	NA	NA
UHGV-2039471_37	PHROG	phrog_88	major tail protein	tail
UHGV-2039471_37	UniRef90	UniRef90_UPI00195648EE	phage tail protein	NA
UHGV-2039471_37	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-2039471_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2039471_37	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2039471_38	PHROG	phrog_709	NA	unknown function
UHGV-2039471_38	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-2039471_38	Structural annotation	PF11836	NA	NA
UHGV-2039471_39	PHROG	phrog_3033	NA	unknown function
UHGV-2039471_39	eggNOG-mapper	1280671.AUJH01000012_gene3142	NA	NA
UHGV-2039471_40	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2039471_40	UniRef90	UniRef90_A0A7W4LCW0	Phage tail tape measure protein	NA
UHGV-2039471_40	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-2039471_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2039471_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2039471_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2039471_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2039471_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2039471_41	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-2039471_41	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-2039471_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-2039471_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2039471_42	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2039471_42	UniRef90	UniRef90_UPI00195D4DA4	phage tail protein	NA
UHGV-2039471_42	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-2039471_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2039471_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2039471_42	COG	COG4926	Phage-related protein	NA
UHGV-2039471_42	Structural annotation	PF14594, PF00629, PF03424, TIGR01665, NF033675, COG4926	NA	NA
UHGV-2039471_43	PHROG	phrog_18444	NA	unknown function
UHGV-2039471_43	UniRef90	UniRef90_UPI0011788049	peptide chain release factor 2	NA
UHGV-2039471_43	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2039471	Yes	32,393 bps	53.01%	91.65%	0.9601
UHGV-2132540	No	40,332 bps	52.56%	99.90%	0.9725
UHGV-2075084	No	40,060 bps	52.57%	99.90%	0.9724