vOTU-014404

Overview

vOTU representative UHGV-2041905

No. of genomes 3

Genome length 39,068 bps

Completeness 99.90% (high-quality)

Host Ruminococcus E bromii B

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-014404
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-00134 › vGENUS-05271 › vSUBGEN-03282 › vOTU-014404
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Acutalibacteraceae › Ruminococcus E › Ruminococcus E bromii B
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2041905
BioSample	SAMN05971455
Genome length	39,068 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	48
CDS density	91.06%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2041905_1	KOfam	K14059	int; integrase	NA
UHGV-2041905_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2041905_1	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-2041905_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-2041905_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2041905_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2041905_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2041905_2	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-2041905_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2041905_2	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-2041905_3	PHROG	phrog_1914	NA	unknown function
UHGV-2041905_3	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2041905_3	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2041905_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2041905_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2041905_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2041905_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2041905_4	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-2041905_4	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-2041905_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2041905_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2041905_4	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-2041905_5	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-2041905_5	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-2041905_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2041905_5	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-2041905_7	PHROG	phrog_585	NA	unknown function
UHGV-2041905_7	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-2041905_7	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-2041905_7	Pfam	PF10711	NA	DUF2513
UHGV-2041905_7	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-2041905_8	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2041905_8	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2041905_8	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2041905_8	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2041905_8	PADLOC	BrxP_00001	BrxP	BREX
UHGV-2041905_8	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2041905_8	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2041905_8	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-2041905_9	PHROG	phrog_8684	NA	unknown function
UHGV-2041905_9	UniRef90	UniRef90_A0A3D3D7E3	YopX domain-containing protein	NA
UHGV-2041905_9	eggNOG-mapper	1122605.KB893643_gene656	YopX protein	NA
UHGV-2041905_9	Pfam	PF09643	YopX protein	YopX
UHGV-2041905_9	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2041905_9	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2041905_10	PHROG	phrog_6058	NA	unknown function
UHGV-2041905_10	Structural annotation	NF033787	NA	NA
UHGV-2041905_11	Structural annotation	COG1862	NA	NA
UHGV-2041905_14	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2041905_14	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2041905_14	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-2041905_14	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-2041905_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2041905_14	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2041905_14	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-2041905_14	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2041905_15	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2041905_15	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-2041905_15	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-2041905_15	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-2041905_15	PADLOC	MTase_I_00010	Type I methyltransferase	RM
UHGV-2041905_15	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2041905_15	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2041905_15	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-2041905_16	PHROG	phrog_824	NA	unknown function
UHGV-2041905_16	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-2041905_16	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-2041905_16	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2041905_16	Structural annotation	PF08774	NA	NA
UHGV-2041905_18	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2041905_18	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-2041905_18	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-2041905_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2041905_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2041905_18	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-2041905_19	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-2041905_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2041905_22	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-2041905_22	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2041905_23	PHROG	phrog_31049	NA	unknown function
UHGV-2041905_23	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-2041905_23	Structural annotation	TIGR01636	NA	NA
UHGV-2041905_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2041905_24	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-2041905_24	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-2041905_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2041905_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2041905_25	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2041905_25	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-2041905_25	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-2041905_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2041905_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2041905_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2041905_26	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-2041905_26	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-2041905_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2041905_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2041905_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2041905_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2041905_27	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2041905_27	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-2041905_27	UniRef90	UniRef90_A0A356CYE0	N-6 DNA methylase	NA
UHGV-2041905_27	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-2041905_27	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-2041905_27	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2041905_27	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2041905_27	Structural annotation	PF02384, PF01420, MF_01872, TIGR00497, COG0286, COG0732	NA	NA
UHGV-2041905_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-2041905_28	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-2041905_28	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-2041905_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2041905_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2041905_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2041905_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2041905_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2041905_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2041905_29	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2041905_29	eggNOG-mapper	1211817.CCAT010000053_gene2131	Belongs to the peptidase S14 family	NA
UHGV-2041905_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2041905_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2041905_29	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2041905_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-2041905_30	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-2041905_30	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-2041905_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2041905_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2041905_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2041905_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2041905_31	PHROG	phrog_749	NA	unknown function
UHGV-2041905_31	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-2041905_31	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-2041905_32	PHROG	phrog_19734	NA	unknown function
UHGV-2041905_32	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-2041905_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2041905_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2041905_33	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-2041905_34	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-2041905_34	eggNOG-mapper	1469948.JPNB01000001_gene696	NA	NA
UHGV-2041905_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2041905_34	Structural annotation	TIGR01725	NA	NA
UHGV-2041905_35	PHROG	phrog_88	major tail protein	tail
UHGV-2041905_35	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-2041905_35	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-2041905_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2041905_35	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2041905_36	Structural annotation	PF11836	NA	NA
UHGV-2041905_37	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2041905_37	UniRef90	UniRef90_A0A1Y4S8C9	PhageMin_Tail domain-containing protein	NA
UHGV-2041905_37	eggNOG-mapper	86416.Clopa_0349	Phage-related minor tail protein	NA
UHGV-2041905_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2041905_37	COG	COG1340	NA	NA
UHGV-2041905_38	PHROG	phrog_5218	NA	unknown function
UHGV-2041905_38	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-2041905_38	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-2041905_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2041905_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2041905_39	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-2041905_39	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-2041905_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-2041905_39	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2041905_40	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2041905_40	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-2041905_40	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-2041905_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2041905_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2041905_40	COG	COG1511	NA	NA
UHGV-2041905_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2041905_41	eggNOG-mapper	1122931.AUAE01000019_gene984	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-2041905_41	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2041905_42	PHROG	phrog_4105	NA	unknown function
UHGV-2041905_42	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-2041905_43	PHROG	phrog_443	holin	lysis
UHGV-2041905_43	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-2041905_43	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-2041905_43	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2041905_43	Structural annotation	PF16945	NA	NA
UHGV-2041905_44	PHROG	phrog_774	NA	unknown function
UHGV-2041905_44	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2041905_45	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2041905_45	PHROG	phrog_20388	endolysin	lysis
UHGV-2041905_45	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2041905_45	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2041905_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2041905_45	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2041905_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2041905_45	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-2041905_46	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2041905_46	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2041905_46	UniRef90	UniRef90_A0A412UM21	Methyltransferase	NA
UHGV-2041905_46	eggNOG-mapper	1226322.HMPREF1545_02860	NA	NA
UHGV-2041905_46	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2041905_46	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2041905_46	COG	COG0863	DNA modification methylase	NA
UHGV-2041905_46	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2041905_47	KOfam	K09384	NA	NA
UHGV-2041905_47	UniRef90	UniRef90_A0A412DTL3	NA	NA
UHGV-2041905_47	eggNOG-mapper	386415.NT01CX_2411	NA	NA
UHGV-2041905_47	Pfam	PF09848	Schlafen group 3, DNA/RNA helicase domain	SLFN-g3_helicase
UHGV-2041905_47	COG	COG3410	NA	NA
UHGV-2041905_48	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2041905_48	UniRef90	UniRef90_A0A3D0XVN5	Capsid protein (Fragment)	NA
UHGV-2041905_48	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-2041905_48	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2041905_48	COG	COG2369	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2041905	Yes	39,068 bps	38.68%	99.90%	0.9605
UHGV-2092227	No	31,978 bps	39.41%	90.89%	0.9742
UHGV-0147778	No	31,104 bps	39.29%	88.41%	0.9727