vOTU-015563

Overview

No. of genomes 18

Genome length 33,106 bps

Completeness 81.79% (medium-quality)

Host CAG-41 sp900066215

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-015563
Number of genomes	18
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00837 › vGENUS-19771 › vOTU-015563
Host taxonomy	Bacteria › Firmicutes A › Clostridia › UBA1381 › UBA1381 › CAG-41 › CAG-41 sp900066215
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1515395
BioSample	SAMEA4378231
Genome length	33,106 bps
CheckV completeness	81.79% (medium-quality)
CheckV contamination	0.00%
CDS count	40
CDS density	93.34%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1515395_2	KOfam	K14059	int; integrase	NA
UHGV-1515395_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1515395_2	UniRef90	UniRef90_A0A416D611	Site-specific integrase	NA
UHGV-1515395_2	eggNOG-mapper	469616.FMAG_00575	Belongs to the 'phage' integrase family	NA
UHGV-1515395_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1515395_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1515395_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1515395_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1515395_3	eggNOG-mapper	537013.CLOSTMETH_00284	NA	NA
UHGV-1515395_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1515395_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1515395_4	UniRef90	UniRef90_UPI0013795F20	helix-turn-helix domain-containing protein	NA
UHGV-1515395_4	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1515395_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1515395_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1515395_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1515395_4	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1515395_5	UniRef90	UniRef90_A0A373VPI4	HTH cro/C1-type domain-containing protein	NA
UHGV-1515395_5	Pfam	PF05339	NA	DUF739
UHGV-1515395_5	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1515395_8	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1515395_8	UniRef90	UniRef90_A0A3D1FJL3	NA	NA
UHGV-1515395_8	eggNOG-mapper	626523.GCWU000342_01044	NA	NA
UHGV-1515395_8	Pfam	PF13643	NA	DUF4145
UHGV-1515395_8	Structural annotation	COG2250	NA	NA
UHGV-1515395_9	PHROG	phrog_34107	NA	unknown function
UHGV-1515395_9	eggNOG-mapper	397290.C810_00389	NA	NA
UHGV-1515395_14	PHROG	phrog_28990	NA	unknown function
UHGV-1515395_15	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1515395_15	PHROG	phrog_1499	NA	unknown function
UHGV-1515395_15	UniRef90	UniRef90_A0A1C6CT75	Chromosome segregation protein	NA
UHGV-1515395_15	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-1515395_15	Pfam	PF13476	AAA domain	AAA_23
UHGV-1515395_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1515395_15	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-1515395_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1515395_16	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-1515395_16	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-1515395_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-1515395_16	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1515395_17	PHROG	phrog_2698	NA	unknown function
UHGV-1515395_17	UniRef90	UniRef90_UPI001106D01D	NA	NA
UHGV-1515395_17	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-1515395_17	Structural annotation	PF05037	NA	NA
UHGV-1515395_18	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1515395_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1515395_18	UniRef90	UniRef90_A0A1C6CSB9	Excinuclease ABC subunit B	NA
UHGV-1515395_18	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-1515395_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1515395_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1515395_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1515395_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1515395_18	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1515395_19	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1515395_19	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1515395_19	UniRef90	UniRef90_A0A1C6CSE0	Regulatory protein repA	NA
UHGV-1515395_19	eggNOG-mapper	1232449.BAHV02000008_gene621	Primase C terminal 2 (PriCT-2)	NA
UHGV-1515395_19	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1515395_19	Pfam	PF13481	AAA domain	AAA_25
UHGV-1515395_19	COG	COG3598	RecA-family ATPase	NA
UHGV-1515395_19	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1515395_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1515395_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1515395_20	UniRef90	UniRef90_A0A1C6CSJ7	Holliday junction resolvase	NA
UHGV-1515395_20	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-1515395_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1515395_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1515395_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1515395_21	Structural annotation	PF08141, MF_00667, TIGR02861, COG0231	NA	NA
UHGV-1515395_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1515395_23	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-1515395_23	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-1515395_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1515395_23	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1515395_24	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1515395_24	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-1515395_24	UniRef90	UniRef90_A0A1C6E4Y4	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase	NA
UHGV-1515395_24	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-1515395_24	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-1515395_24	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1515395_24	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1515395_24	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-1515395_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1515395_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1515395_25	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-1515395_25	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-1515395_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1515395_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1515395_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1515395_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1515395_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1515395_26	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-1515395_26	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-1515395_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1515395_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1515395_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1515395_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-1515395_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1515395_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-1515395_27	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-1515395_27	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1515395_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1515395_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1515395_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1515395_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1515395_28	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-1515395_28	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-1515395_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1515395_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1515395_28	COG	COG2369	NA	NA
UHGV-1515395_28	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-1515395_29	Structural annotation	PF00677, NF009627, COG3277	NA	NA
UHGV-1515395_30	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1515395_30	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-1515395_30	Pfam	PF14265	NA	DUF4355
UHGV-1515395_30	Structural annotation	PF14265	NA	NA
UHGV-1515395_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-1515395_31	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1515395_31	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-1515395_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1515395_31	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1515395_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1515395_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1515395_31	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1515395_32	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1515395_32	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-1515395_32	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-1515395_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1515395_32	Structural annotation	PF05135	NA	NA
UHGV-1515395_33	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-1515395_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1515395_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1515395_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1515395_34	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-1515395_34	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-1515395_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1515395_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1515395_34	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1515395_35	PHROG	phrog_78	tail terminator	connector
UHGV-1515395_35	Structural annotation	PF05657	NA	NA
UHGV-1515395_36	PHROG	phrog_88	major tail protein	tail
UHGV-1515395_36	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-1515395_36	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-1515395_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1515395_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1515395_38	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1515395_38	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-1515395_38	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-1515395_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1515395_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1515395_38	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1515395_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1515395_39	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-1515395_39	eggNOG-mapper	86416.Clopa_3365	PFAM Phage tail protein	NA
UHGV-1515395_39	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1515395_39	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1515395_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-1515395_39	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-1515395_40	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1515395_40	UniRef90	UniRef90_A0A1C6E329	Phage-related protein	NA
UHGV-1515395_40	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-1515395_40	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1515395_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1515395_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1515395_40	COG	COG4926	Phage-related protein	NA
UHGV-1515395_40	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1515395	Yes	33,106 bps	39.67%	81.79%	0.9758
UHGV-1539530	No	33,799 bps	40.22%	83.76%	0.9787
UHGV-0117872	No	33,534 bps	39.62%	83.06%	0.9748
UHGV-1519778	No	32,047 bps	41.15%	79.41%	0.9792
UHGV-0130425	No	31,545 bps	41.35%	78.16%	0.9778
UHGV-0167264	No	26,506 bps	39.74%	65.67%	0.9787
UHGV-1486048	No	26,506 bps	39.74%	65.67%	0.9787
UHGV-0080456	No	25,453 bps	40.40%	63.07%	0.9806
UHGV-0085772	No	24,207 bps	40.13%	59.98%	0.9808
UHGV-1426573	No	24,207 bps	40.13%	59.98%	0.9808
UHGV-2040528	No	23,702 bps	40.14%	58.73%	0.9806
UHGV-1523517	No	20,293 bps	40.86%	50.27%	0.9791
UHGV-1695355	No	19,919 bps	40.98%	49.35%	0.9809
UHGV-1967852	No	17,676 bps	41.54%	43.80%	0.9800
UHGV-1825022	No	15,941 bps	40.93%	39.48%	0.9793
UHGV-1563158	No	11,937 bps	42.03%	29.56%	0.9809
UHGV-1821719	No	11,291 bps	41.86%	27.96%	0.9821
UHGV-1690781	No	10,970 bps	39.70%	27.13%	0.9805