vOTU-015638

Overview

No. of genomes 13

Genome length 26,526 bps

Completeness 62.13% (medium-quality)

Host Actinomyces graevenitzii

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-015638
Number of genomes	13
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00096 › vOTU-015638
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Actinomycetaceae › Actinomyces › Actinomyces graevenitzii
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1483421
BioSample	SAMEA2738158
Genome length	26,526 bps
CheckV completeness	62.13% (medium-quality)
CheckV contamination	0.00%
CDS count	36
CDS density	95.16%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1483421_1	KOfam	K14059	int; integrase	NA
UHGV-1483421_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1483421_1	UniRef90	UniRef90_A0A507ZZ56	Tyrosine-type recombinase/integrase	NA
UHGV-1483421_1	eggNOG-mapper	525246.HMPREF0058_0039	DNA integration	NA
UHGV-1483421_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1483421_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1483421_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1483421_1	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA
UHGV-1483421_2	PHROG	phrog_87	metallo-protease	other
UHGV-1483421_2	UniRef90	UniRef90_A0A8D4FWI8	Peptidase_M78 domain-containing protein	NA
UHGV-1483421_2	eggNOG-mapper	1284679.HMPREF1626_08645	Zn peptidase	NA
UHGV-1483421_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1483421_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1483421_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1483421_3	UniRef90	UniRef90_UPI001E36E015	helix-turn-helix domain-containing protein	NA
UHGV-1483421_4	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-1483421_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1483421_9	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-1483421_9	Pfam	PF00462	Glutaredoxin	Glutaredoxin
UHGV-1483421_9	COG	COG0695	Glutaredoxin	NA
UHGV-1483421_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1483421_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1483421_10	UniRef90	UniRef90_G9PGJ7	Single-stranded DNA-binding protein	NA
UHGV-1483421_10	eggNOG-mapper	435830.HMPREF0045_01371	Single-stranded DNA-binding protein	NA
UHGV-1483421_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1483421_10	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-1483421_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1483421_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1483421_10	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-1483421_11	PHROG	phrog_15463	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1483421_11	UniRef90	UniRef90_A0A4Q8AC36	HNH endonuclease	NA
UHGV-1483421_11	eggNOG-mapper	1429046.RR21198_3140	endonuclease activity	NA
UHGV-1483421_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1483421_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1483421_12	PHROG	phrog_1467	NA	unknown function
UHGV-1483421_12	eggNOG-mapper	596328.HMPREF0578_0252	NA	NA
UHGV-1483421_13	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1483421_14	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1483421_14	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1483421_14	UniRef90	UniRef90_C0W4E5	HNH endonuclease domain protein	NA
UHGV-1483421_14	eggNOG-mapper	525246.HMPREF0058_0739	HNH nucleases	NA
UHGV-1483421_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1483421_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1483421_16	PHROG	phrog_226	minor tail protein	tail
UHGV-1483421_16	UniRef90	UniRef90_A0A5J6TJA8	Terminase small subunit	NA
UHGV-1483421_16	eggNOG-mapper	525246.HMPREF0058_0740	NA	NA
UHGV-1483421_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1483421_17	UniRef90	UniRef90_C0W4E7	Putative phage terminase, large subunit	NA
UHGV-1483421_17	eggNOG-mapper	525246.HMPREF0058_0741	Terminase	NA
UHGV-1483421_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1483421_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1483421_18	PHROG	phrog_104	portal protein	head and packaging
UHGV-1483421_18	UniRef90	UniRef90_W1VBN6	Gp14 family protein	NA
UHGV-1483421_18	eggNOG-mapper	525246.HMPREF0058_0742	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1483421_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1483421_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1483421_19	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1483421_19	UniRef90	UniRef90_UPI001F44EF07	YhcN/YlaJ family sporulation lipoprotein	NA
UHGV-1483421_19	eggNOG-mapper	1284679.HMPREF1626_03570	NA	NA
UHGV-1483421_20	eggNOG-mapper	525246.HMPREF0058_0745	NA	NA
UHGV-1483421_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1483421_21	UniRef90	UniRef90_A0A7Y0Y403	Phage major capsid protein	NA
UHGV-1483421_21	eggNOG-mapper	525246.HMPREF0058_0746	Phage capsid family	NA
UHGV-1483421_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1483421_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1483421_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1483421_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1483421_22	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1483421_22	UniRef90	UniRef90_UPI001E5890DE	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-1483421_22	eggNOG-mapper	1120934.KB894445_gene3660	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1483421_22	Structural annotation	PF09355	NA	NA
UHGV-1483421_23	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1483421_24	UniRef90	UniRef90_UPI001555A7D5	NA	NA
UHGV-1483421_24	eggNOG-mapper	525246.HMPREF0058_0749	NA	NA
UHGV-1483421_24	Pfam	PF17395	NA	DUF5403
UHGV-1483421_24	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1483421_26	PHROG	phrog_117	major tail protein	tail
UHGV-1483421_26	UniRef90	UniRef90_A0A2E9N8C2	Phage tail protein	NA
UHGV-1483421_26	eggNOG-mapper	1445613.JALM01000017_gene5875	NA	NA
UHGV-1483421_26	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1483421_29	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1483421_29	UniRef90	UniRef90_C0W4G0	TMP repeat protein	NA
UHGV-1483421_29	eggNOG-mapper	525246.HMPREF0058_0754	tape measure	NA
UHGV-1483421_29	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1483421_30	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1483421_30	UniRef90	UniRef90_A0A8F2VU82	Fibronectin type III domain-containing protein	NA
UHGV-1483421_30	eggNOG-mapper	883077.HMPREF9241_01707	Fibronectin type 3 domain	NA
UHGV-1483421_30	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1483421_30	Structural annotation	PF00041, PF02010, PF05939, MF_04116, NF010681, COG3401, COG2372, COG5437	NA	NA
UHGV-1483421_31	PHROG	phrog_1887	tail protein	tail
UHGV-1483421_31	eggNOG-mapper	883077.HMPREF9241_01708	NA	NA
UHGV-1483421_31	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1483421_32	COG	COG4675	Phage tail collar domain	NA
UHGV-1483421_33	PHROG	phrog_21825	endolysin	lysis
UHGV-1483421_33	UniRef90	UniRef90_UPI00069174E5	peptidoglycan-binding protein	NA
UHGV-1483421_33	eggNOG-mapper	1294142.CINTURNW_3789	COG COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains)	NA
UHGV-1483421_33	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1483421_33	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1483421_35	PHROG	phrog_404	minor tail protein	tail

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1483421	Yes	26,526 bps	53.74%	62.13%	0.9540
UHGV-1450103	No	28,301 bps	53.97%	66.29%	0.9474
UHGV-1488062	No	26,538 bps	53.85%	58.59%	0.9554
UHGV-1488061	No	26,538 bps	53.74%	58.28%	0.9524
UHGV-1484133	No	26,574 bps	53.86%	58.20%	0.9499
UHGV-1489135	No	26,532 bps	53.75%	58.10%	0.9489
UHGV-1489175	No	26,430 bps	53.79%	56.70%	0.9536
UHGV-0324819	No	26,465 bps	53.90%	53.23%	0.9489
UHGV-0159215	No	26,216 bps	53.89%	52.54%	0.9611
UHGV-1845201	No	22,494 bps	54.11%	49.46%	0.9641
UHGV-1691032	No	19,972 bps	54.07%	46.57%	0.9670
UHGV-1682560	No	21,068 bps	53.74%	45.55%	0.9480
UHGV-1783927	No	12,353 bps	53.66%	26.38%	0.9584