vOTU-015955

Overview

No. of genomes 24

Genome length 15,919 bps

Completeness 74.03% (medium-quality)

Host Unclassified

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-015955
Number of genomes	24
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes › Salasmaviridae
Taxonomy (UHGV)	vFAM-00015 › vOTU-015955
Host taxonomy
Host range breadth
Host prediction method
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1501103
BioSample	NA
Genome length	15,919 bps
CheckV completeness	74.03% (medium-quality)
CheckV contamination	0.00%
CDS count	18
CDS density	91.04%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1501103_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1501103_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1501103_3	UniRef90	UniRef90_A0A1H7FVY1	Single-stranded DNA-binding protein	NA
UHGV-1501103_3	eggNOG-mapper	1410626.JHXB01000012_gene2710	Single-strand binding protein family	NA
UHGV-1501103_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1501103_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1501103_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1501103_6	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-1501103_6	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-1501103_6	UniRef90	UniRef90_A0A6N4TFX3	HD family phosphohydrolase	NA
UHGV-1501103_6	eggNOG-mapper	658659.HMPREF0983_01076	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-1501103_6	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-1501103_6	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-1501103_9	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1501103_9	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1501103_9	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1501103_9	Structural annotation	PF00136, MF_04055, NF004415, COG0417	NA	NA
UHGV-1501103_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-1501103_10	UniRef90	UniRef90_A0A843GWJ9	Phage DNA encapsidation protein	NA
UHGV-1501103_10	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1501103_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1501103_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1501103_12	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1501103_12	UniRef90	UniRef90_A6XAD8	Lower collar	NA
UHGV-1501103_12	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-1501103_13	PHROG	phrog_2038	upper collar connector	connector
UHGV-1501103_13	UniRef90	UniRef90_Q37891	Portal protein	NA
UHGV-1501103_13	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-1501103_13	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1501103_13	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1501103_14	PHROG	phrog_2248	tail protein	tail
UHGV-1501103_14	UniRef90	UniRef90_A0A843HJ60	Caud_tail_N domain-containing protein	NA
UHGV-1501103_14	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-1501103_14	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1501103_14	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1501103_14	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1501103_15	KOfam	K07273	acm; lysozyme	NA
UHGV-1501103_15	PHROG	phrog_291	endolysin	lysis
UHGV-1501103_15	UniRef90	UniRef90_UPI0008D97443	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1501103_15	eggNOG-mapper	411473.RUMCAL_02121	Glycosyl hydrolases family 25	NA
UHGV-1501103_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1501103_15	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-1501103_15	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1501103_15	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1501103_16	PHROG	phrog_199	holin	lysis
UHGV-1501103_16	UniRef90	UniRef90_UPI00164BD6C2	phage holin family protein	NA
UHGV-1501103_16	eggNOG-mapper	877411.JMMA01000002_gene949	Bacteriophage holin family	NA
UHGV-1501103_16	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1501103_16	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1501103_16	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1501103_16	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1501103_17	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1501103_17	UniRef90	UniRef90_A0A345BNP8	Major head protein	NA
UHGV-1501103_17	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-1501103_17	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1501103_18	Structural annotation	PF11418	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1501103	Yes	15,919 bps	38.59%	74.03%	0.9619
UHGV-0051819	No	15,838 bps	38.36%	74.01%	0.9660
UHGV-1500898	No	15,838 bps	38.36%	74.01%	0.9660
UHGV-1500900	No	15,838 bps	38.36%	74.01%	0.9756
UHGV-1500901	No	15,838 bps	38.36%	74.01%	0.9660
UHGV-1503954	No	15,894 bps	38.59%	73.91%	0.9704
UHGV-0057128	No	15,972 bps	38.45%	73.80%	0.9657
UHGV-1502441	No	15,972 bps	38.45%	73.80%	0.9657
UHGV-0351642	No	15,964 bps	38.46%	73.77%	0.9721
UHGV-0327893	No	15,962 bps	38.23%	73.77%	0.9731
UHGV-1499292	No	16,086 bps	38.60%	73.73%	0.9557
UHGV-0056895	No	15,854 bps	38.33%	73.66%	0.9715
UHGV-1501620	No	15,854 bps	38.33%	73.66%	0.9715
UHGV-1502052	No	15,946 bps	38.52%	73.62%	0.9594
UHGV-1504968	No	16,060 bps	38.64%	73.61%	0.9577
UHGV-1499265	No	15,816 bps	38.61%	73.55%	0.9652
UHGV-0185799	No	16,008 bps	38.67%	73.37%	0.9580
UHGV-1506546	No	15,849 bps	38.53%	73.16%	0.9743
UHGV-1503869	No	15,804 bps	38.57%	72.95%	0.9743
UHGV-1505253	No	15,800 bps	38.42%	72.90%	0.9705
UHGV-1505254	No	15,800 bps	38.41%	72.90%	0.9756
UHGV-0287062	No	13,380 bps	38.28%	44.98%	0.9733
UHGV-1586214	No	11,841 bps	38.92%	40.96%	0.9762
UHGV-1903956	No	11,836 bps	38.92%	40.94%	0.9761