vOTU-016493

Overview

No. of genomes 9

Genome length 37,448 bps

Completeness 60.76% (medium-quality)

Host CAG-313 sp000433035

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-016493
Number of genomes	9
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00074 › vOTU-016493
Host taxonomy	Bacteria › Firmicutes › Bacilli › ML615J-28 › CAG-313 › CAG-313 › CAG-313 sp000433035
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0244418
BioSample	SAMN06165537
Genome length	37,448 bps
CheckV completeness	60.76% (medium-quality)
CheckV contamination	0.00%
CDS count	58
CDS density	93.31%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0244418_1	PHROG	phrog_422	major head protein	head and packaging
UHGV-0244418_1	UniRef90	UniRef90_A0A345BNV6	Putative major head protein	NA
UHGV-0244418_1	eggNOG-mapper	1243664.CAVL020000019_gene3763	NA	NA
UHGV-0244418_4	Structural annotation	TIGR01725	NA	NA
UHGV-0244418_11	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0244418_14	PHROG	phrog_16490	NA	unknown function
UHGV-0244418_14	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0244418_15	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0244418_15	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0244418_17	PHROG	phrog_3754	NA	unknown function
UHGV-0244418_17	eggNOG-mapper	1278311.AUAL01000001_gene36	NA	NA
UHGV-0244418_22	UniRef90	UniRef90_A0A345BNV9	HTH_XRE protein	NA
UHGV-0244418_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0244418_23	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0244418_23	PHROG	phrog_95	integrase	integration and excision
UHGV-0244418_23	UniRef90	UniRef90_A0A345BNV8	Resolvase	NA
UHGV-0244418_23	eggNOG-mapper	665959.HMPREF1013_00877	Recombinase	NA
UHGV-0244418_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0244418_23	Pfam	PF07508	Recombinase	Recombinase
UHGV-0244418_23	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0244418_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0244418_23	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0244418_25	UniRef90	UniRef90_A0A419VV00	Tetratricopeptide repeat protein	NA
UHGV-0244418_25	eggNOG-mapper	1114856.C496_14291	COG0457 FOG TPR repeat	NA
UHGV-0244418_26	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0244418_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0244418_26	UniRef90	UniRef90_A0A345BNV7	HTH_XRE protein	NA
UHGV-0244418_26	eggNOG-mapper	580331.Thit_1413	Helix-turn-helix XRE-family like proteins	NA
UHGV-0244418_26	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0244418_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0244418_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0244418_26	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0244418_28	UniRef90	UniRef90_A0A7C6H206	Helix-turn-helix transcriptional regulator	NA
UHGV-0244418_28	eggNOG-mapper	1582156.A0A0A8WIG0_9CAUD	BetR domain	NA
UHGV-0244418_28	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0244418_28	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0244418_30	KOfam	K06416	spoVS; stage V sporulation protein S	NA
UHGV-0244418_30	UniRef90	UniRef90_A0A345BNW0	Stage V sporulation protein S	NA
UHGV-0244418_30	Pfam	PF04232	Stage V sporulation protein S (SpoVS)	SpoVS
UHGV-0244418_30	COG	COG2359	Stage V sporulation protein SpoVS, predicted DNA-binding, AlbA superfamily	NA
UHGV-0244418_31	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0244418_31	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0244418_31	UniRef90	UniRef90_A0A345BNW1	ATPase	NA
UHGV-0244418_31	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-0244418_31	Pfam	PF13476	AAA domain	AAA_23
UHGV-0244418_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0244418_31	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0244418_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0244418_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0244418_32	UniRef90	UniRef90_A0A345BNW2	RecT family protein	NA
UHGV-0244418_32	eggNOG-mapper	443254.Marpi_0301	RecT family	NA
UHGV-0244418_32	Pfam	PF03837	RecT family	RecT
UHGV-0244418_32	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0244418_32	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0244418_33	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0244418_33	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0244418_33	UniRef90	UniRef90_A0A345BNW3	YycJ-like protein	NA
UHGV-0244418_33	eggNOG-mapper	330397.A8ATK9_9CAUD	hydrolase activity	NA
UHGV-0244418_33	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0244418_33	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0244418_34	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0244418_34	UniRef90	UniRef90_A0A345BNV2	DnaD domain-containing protein	NA
UHGV-0244418_34	eggNOG-mapper	441768.ACL_0587	NA	NA
UHGV-0244418_34	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0244418_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0244418_34	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0244418_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0244418_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0244418_35	UniRef90	UniRef90_A0A380K591	DNA-binding phage protein	NA
UHGV-0244418_35	eggNOG-mapper	869209.Tresu_0643	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0244418_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0244418_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0244418_35	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0244418_35	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0244418_37	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0244418_37	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0244418_37	UniRef90	UniRef90_A0A3E3DUV0	Adenine methyltransferase	NA
UHGV-0244418_37	eggNOG-mapper	1226322.HMPREF1545_00633	MT-A70	NA
UHGV-0244418_37	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0244418_37	Pfam	PF05063	MT-A70	MT-A70
UHGV-0244418_37	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0244418_37	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0244418_39	UniRef90	UniRef90_A0A843GVY1	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0244418_39	eggNOG-mapper	1410650.JHWL01000037_gene595	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0244418_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0244418_40	PHROG	phrog_17284	NA	unknown function
UHGV-0244418_40	UniRef90	UniRef90_A0A7C6U4G9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0244418_40	eggNOG-mapper	1033733.CAEK01000007_gene1648	Cytosine-specific methyltransferase	NA
UHGV-0244418_40	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0244418_40	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0244418_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0244418_42	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0244418_42	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0244418_43	UniRef90	UniRef90_A0A844U3V8	Leucine-rich repeat protein	NA
UHGV-0244418_43	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0244418_45	PHROG	phrog_3136	NA	unknown function
UHGV-0244418_45	UniRef90	UniRef90_A0A345BNV4	RNA-binding domain containing protein	NA
UHGV-0244418_45	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0244418_51	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0244418_51	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0244418_51	UniRef90	UniRef90_A0A0J1FUR4	Methyltransferase	NA
UHGV-0244418_51	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0244418_51	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0244418_51	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0244418_51	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0244418_51	COG	COG0863	DNA modification methylase	NA
UHGV-0244418_51	Structural annotation	PF01555, PF02195, NF010253, TIGR00180, COG0863, COG5119	NA	NA
UHGV-0244418_52	PHROG	phrog_2412	NA	unknown function
UHGV-0244418_52	UniRef90	UniRef90_A0A345BNT6	Terminase large subunit	NA
UHGV-0244418_52	eggNOG-mapper	1122981.AUME01000026_gene531	NA	NA
UHGV-0244418_53	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0244418_53	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0244418_53	UniRef90	UniRef90_A0A345BNW5	Terminase large subunit	NA
UHGV-0244418_53	eggNOG-mapper	1007096.BAGW01000022_gene2657	Terminase-like family	NA
UHGV-0244418_53	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0244418_53	COG	COG1783	Phage terminase large subunit	NA
UHGV-0244418_53	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0244418_54	PHROG	phrog_533	portal protein	head and packaging
UHGV-0244418_54	UniRef90	UniRef90_A0A345BNV5	Putative portal protein	NA
UHGV-0244418_54	eggNOG-mapper	552396.HMPREF0863_01629	NA	NA
UHGV-0244418_54	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0244418_55	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0244418_55	UniRef90	UniRef90_A0A345BNW6	Minor capsid protein 2	NA
UHGV-0244418_55	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0244418_55	COG	COG2369	NA	NA
UHGV-0244418_57	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0244418_57	UniRef90	UniRef90_A0A345BNW7	Minor structural protein	NA
UHGV-0244418_57	eggNOG-mapper	665959.HMPREF1013_00201	Phage minor structural protein GP20	NA
UHGV-0244418_57	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0244418_57	Structural annotation	PF06810	NA	NA
UHGV-0244418_58	PHROG	phrog_422	major head protein	head and packaging
UHGV-0244418_58	eggNOG-mapper	645991.Sgly_0340	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0244418	Yes	37,448 bps	27.17%	60.76%	0.9601
UHGV-0060499	No	22,761 bps	27.71%	65.27%	0.9569
UHGV-2183937	No	36,580 bps	27.74%	59.13%	0.9509
UHGV-0090555	No	35,672 bps	27.81%	57.66%	0.9504
UHGV-0090219	No	18,058 bps	27.48%	28.83%	0.9505
UHGV-2137840	No	17,265 bps	27.37%	28.35%	0.9479
UHGV-0151323	No	14,384 bps	27.77%	23.21%	0.9648
UHGV-0063320	No	10,170 bps	28.22%	17.75%	0.9711
UHGV-0067170	No	11,965 bps	26.34%	14.09%	0.9482