vOTU-016603

Overview

vOTU representative UHGV-0193294

No. of genomes 11

Genome length 41,621 bps

Completeness 79.46% (medium-quality)

Host Enterococcus A avium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-016603
Number of genomes	11
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00052 › vSUBFAM-02265 › vGENUS-06815 › vSUBGEN-73541 › vOTU-016603
Host taxonomy	Bacteria › Firmicutes › Bacilli › Lactobacillales › Enterococcaceae › Enterococcus A › Enterococcus A avium
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0193294
BioSample	SAMN05826864
Genome length	41,621 bps
CheckV completeness	79.46% (medium-quality)
CheckV contamination	0.00%
CDS count	56
CDS density	87.44%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0193294_1	PHROG	phrog_10054	NA	unknown function
UHGV-0193294_1	UniRef90	UniRef90_UPI001CECE649	phage baseplate upper protein	NA
UHGV-0193294_1	eggNOG-mapper	1158602.I590_03008	NA	NA
UHGV-0193294_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0193294_1	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0193294_2	PHROG	phrog_1536	NA	unknown function
UHGV-0193294_2	eggNOG-mapper	1140002.I570_03997	NA	NA
UHGV-0193294_3	PHROG	phrog_1382	NA	unknown function
UHGV-0193294_3	eggNOG-mapper	1140002.I570_03995	NA	NA
UHGV-0193294_3	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0193294_3	Structural annotation	NF040910	NA	NA
UHGV-0193294_4	PHROG	phrog_689	holin	lysis
UHGV-0193294_4	UniRef90	UniRef90_A0A7H4KVV3	Hemolysin XhlA	NA
UHGV-0193294_4	eggNOG-mapper	1234679.BN424_3275	Haemolysin XhlA	NA
UHGV-0193294_4	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0193294_5	PHROG	phrog_881	holin	lysis
UHGV-0193294_5	UniRef90	UniRef90_A0A7H4KVV4	Putative holin	NA
UHGV-0193294_5	eggNOG-mapper	1158614.I592_02317	Putative phage holin Dp-1	NA
UHGV-0193294_5	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0193294_5	Structural annotation	PF16938	NA	NA
UHGV-0193294_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0193294_6	PHROG	phrog_291	endolysin	lysis
UHGV-0193294_6	UniRef90	UniRef90_A0A7H4KVV5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0193294_6	eggNOG-mapper	1158614.I592_02316	and GP 10880731	NA
UHGV-0193294_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0193294_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0193294_7	KOfam	K14059	int; integrase	NA
UHGV-0193294_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0193294_7	UniRef90	UniRef90_A0A7H4KVP6	Site-specific tyrosine recombinase XerC-family protein	NA
UHGV-0193294_7	eggNOG-mapper	1158614.I592_00576	Phage integrase family	NA
UHGV-0193294_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0193294_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0193294_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0193294_8	PHROG	phrog_3727	NA	unknown function
UHGV-0193294_8	UniRef90	UniRef90_R2XFS1	NA	NA
UHGV-0193294_8	Pfam	PF11611	NA	DUF4352
UHGV-0193294_9	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0193294_9	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0193294_9	UniRef90	UniRef90_R2XTX4	HTH cro/C1-type domain-containing protein	NA
UHGV-0193294_9	eggNOG-mapper	1158614.I592_00578	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0193294_9	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0193294_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0193294_9	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0193294_10	PHROG	phrog_904	excisionase	integration and excision
UHGV-0193294_10	UniRef90	UniRef90_A0A376H781	Excisionase	NA
UHGV-0193294_10	eggNOG-mapper	226185.EF_0309	NA	NA
UHGV-0193294_11	eggNOG-mapper	1158614.I592_02357	NA	NA
UHGV-0193294_12	UniRef90	UniRef90_UPI0002A1CD2D	primase-like DNA-binding domain-containing protein	NA
UHGV-0193294_13	Pfam	PF09466	Hypothetical protein Yqai	Yqai
UHGV-0193294_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0193294_14	UniRef90	UniRef90_UPI001D05FB74	siphovirus Gp157 family protein	NA
UHGV-0193294_14	eggNOG-mapper	1140001.I571_01131	Siphovirus Gp157	NA
UHGV-0193294_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0193294_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0193294_15	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0193294_15	UniRef90	UniRef90_A0A7U6L474	DNA-binding protein	NA
UHGV-0193294_15	eggNOG-mapper	1140001.I571_01132	AAA domain	NA
UHGV-0193294_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0193294_15	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0193294_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0193294_16	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0193294_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0193294_16	UniRef90	UniRef90_A0A7U6QW10	DEAD/DEAH box helicase	NA
UHGV-0193294_16	eggNOG-mapper	1140001.I571_01133	helicase superfamily c-terminal domain	NA
UHGV-0193294_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0193294_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0193294_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0193294_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0193294_17	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0193294_17	UniRef90	UniRef90_UPI00137507B0	NA	NA
UHGV-0193294_17	eggNOG-mapper	1140001.I571_01134	NA	NA
UHGV-0193294_17	Pfam	PF05037	NA	DUF669
UHGV-0193294_17	Structural annotation	PF05037, MF_00720, NF004948, COG2965	NA	NA
UHGV-0193294_18	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0193294_18	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0193294_18	UniRef90	UniRef90_A0A7U6L457	SF3 helicase domain-containing protein	NA
UHGV-0193294_18	eggNOG-mapper	1140001.I571_01135	Phage plasmid primase, P4	NA
UHGV-0193294_18	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0193294_18	Pfam	PF19263	NA	DUF5906
UHGV-0193294_18	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0193294_18	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0193294_18	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0193294_18	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0193294_19	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0193294_19	UniRef90	UniRef90_A0A7U6L454	VRR-NUC domain-containing protein	NA
UHGV-0193294_19	eggNOG-mapper	1140001.I571_01136	VRR-NUC domain	NA
UHGV-0193294_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0193294_19	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0193294_22	PHROG	phrog_16527	NA	unknown function
UHGV-0193294_24	PHROG	phrog_2955	NA	unknown function
UHGV-0193294_26	PHROG	phrog_121	NA	unknown function
UHGV-0193294_26	UniRef90	UniRef90_UPI000C9C3F7C	NA	NA
UHGV-0193294_26	eggNOG-mapper	1140002.I570_04029	NA	NA
UHGV-0193294_26	Pfam	PF07852	NA	DUF1642
UHGV-0193294_26	Structural annotation	PF07852	NA	NA
UHGV-0193294_27	PHROG	phrog_34095	NA	unknown function
UHGV-0193294_27	eggNOG-mapper	1140002.I570_01452	NA	NA
UHGV-0193294_28	Structural annotation	PF09032	NA	NA
UHGV-0193294_32	PHROG	phrog_98	NA	unknown function
UHGV-0193294_32	UniRef90	UniRef90_UPI000DEA51D2	YopX family protein	NA
UHGV-0193294_32	eggNOG-mapper	1158614.I592_00610	YopX protein	NA
UHGV-0193294_32	Pfam	PF09643	YopX protein	YopX
UHGV-0193294_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0193294_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0193294_33	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0193294_33	UniRef90	UniRef90_A0A7G8ZYV2	NA	NA
UHGV-0193294_33	eggNOG-mapper	1140001.I571_01723	NA	NA
UHGV-0193294_33	Structural annotation	PF17399	NA	NA
UHGV-0193294_35	PHROG	phrog_11760	NA	unknown function
UHGV-0193294_35	UniRef90	UniRef90_A0A0E0UWB8	Phenylalanyl-tRNA synthetase, beta subunit	NA
UHGV-0193294_35	eggNOG-mapper	1140002.I570_04023	NA	NA
UHGV-0193294_36	PHROG	phrog_17548	NA	unknown function
UHGV-0193294_36	eggNOG-mapper	1140002.I570_04022	NA	NA
UHGV-0193294_37	PHROG	phrog_31463	NA	unknown function
UHGV-0193294_37	UniRef90	UniRef90_UPI001160B515	LemA family protein	NA
UHGV-0193294_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0193294_38	UniRef90	UniRef90_A0A418IPP1	Transcriptional regulator	NA
UHGV-0193294_38	eggNOG-mapper	1231377.C426_2205	Transcriptional regulator, RinA family	NA
UHGV-0193294_38	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0193294_38	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0193294_39	PHROG	phrog_9904	NA	unknown function
UHGV-0193294_39	UniRef90	UniRef90_A0A377KPL7	Thymidylate synthase	NA
UHGV-0193294_40	PHROG	phrog_22957	NA	unknown function
UHGV-0193294_40	UniRef90	UniRef90_C9B4K2	Predicted protein	NA
UHGV-0193294_41	PHROG	phrog_1066	NA	unknown function
UHGV-0193294_41	eggNOG-mapper	1140001.I571_01742	NA	NA
UHGV-0193294_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0193294_42	UniRef90	UniRef90_A0A5P3FX70	Terminase	NA
UHGV-0193294_42	eggNOG-mapper	1140001.I571_01743	Phage Terminase	NA
UHGV-0193294_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0193294_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0193294_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0193294_42	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0193294_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-0193294_43	UniRef90	UniRef90_A0A377L6J0	Phage portal protein	NA
UHGV-0193294_43	eggNOG-mapper	1140001.I571_01744	Phage portal protein	NA
UHGV-0193294_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0193294_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0193294_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0193294_43	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0193294_44	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0193294_44	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0193294_44	UniRef90	UniRef90_A0A377KNA0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0193294_44	eggNOG-mapper	1140001.I571_01745	Clp protease	NA
UHGV-0193294_44	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0193294_44	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0193294_44	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0193294_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-0193294_45	UniRef90	UniRef90_UPI0004975DC5	phage major capsid protein	NA
UHGV-0193294_45	eggNOG-mapper	1140001.I571_01746	Phage capsid family	NA
UHGV-0193294_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0193294_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0193294_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0193294_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0193294_46	PHROG	phrog_933	NA	unknown function
UHGV-0193294_46	UniRef90	UniRef90_C9B4L1	Predicted protein	NA
UHGV-0193294_47	PHROG	phrog_749	NA	unknown function
UHGV-0193294_47	UniRef90	UniRef90_UPI000B852D33	phage gp6-like head-tail connector protein	NA
UHGV-0193294_47	eggNOG-mapper	1140001.I571_01747	NA	NA
UHGV-0193294_47	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0193294_47	Structural annotation	TIGR01560	NA	NA
UHGV-0193294_48	PHROG	phrog_25	head closure Hc1	connector
UHGV-0193294_48	UniRef90	UniRef90_A0A430AK20	Phage head-tail adapter protein	NA
UHGV-0193294_48	eggNOG-mapper	1140001.I571_01748	NA	NA
UHGV-0193294_48	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0193294_49	UniRef90	UniRef90_A0A0M2B3I2	Phage protein, HK97 gp10 family	NA
UHGV-0193294_49	eggNOG-mapper	1140001.I571_01749	NA	NA
UHGV-0193294_49	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0193294_50	PHROG	phrog_78	tail terminator	connector
UHGV-0193294_50	UniRef90	UniRef90_A0A377L6L1	Gp10 family protein	NA
UHGV-0193294_50	eggNOG-mapper	1140001.I571_01750	NA	NA
UHGV-0193294_50	Structural annotation	PF05657	NA	NA
UHGV-0193294_51	PHROG	phrog_88	major tail protein	tail
UHGV-0193294_51	UniRef90	UniRef90_A0A4P8KEK6	Phage tail protein	NA
UHGV-0193294_51	eggNOG-mapper	1158614.I592_00627	Phage tail tube protein	NA
UHGV-0193294_51	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0193294_51	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0193294_51	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0193294_52	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0193294_53	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0193294_53	UniRef90	UniRef90_A0A510C9C3	Phage tail tape measure protein	NA
UHGV-0193294_53	eggNOG-mapper	1158614.I592_00631	Phage-related minor tail protein	NA
UHGV-0193294_53	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0193294_53	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0193294_53	COG	COG3953	SLT domain protein	NA
UHGV-0193294_54	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0193294_54	UniRef90	UniRef90_A0A4P8KEL5	Phage tail family protein	NA
UHGV-0193294_54	eggNOG-mapper	1158614.I592_00632	Phage tail protein	NA
UHGV-0193294_54	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0193294_54	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0193294_55	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0193294_55	UniRef90	UniRef90_UPI001C0FC0B4	phage tail protein	NA
UHGV-0193294_55	eggNOG-mapper	1158614.I592_00633	Prophage endopeptidase tail	NA
UHGV-0193294_55	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0193294_55	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0193294_55	COG	COG4926	Phage-related protein	NA
UHGV-0193294_55	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0193294_56	PHROG	phrog_4577	tail protein	tail
UHGV-0193294_56	eggNOG-mapper	1158601.I585_00683	NA	NA
UHGV-0193294_56	Structural annotation	NF041901	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0193294	Yes	41,621 bps	38.28%	79.46%	0.9764
UHGV-1462775	No	41,342 bps	38.30%	86.29%	0.9770
UHGV-1490963	No	36,720 bps	38.18%	85.73%	0.9756
UHGV-1378951	No	41,043 bps	38.30%	78.73%	0.9779
UHGV-1760689	No	17,261 bps	38.43%	41.21%	0.9788
UHGV-1571388	No	12,154 bps	38.58%	29.22%	0.9811
UHGV-1617257	No	11,413 bps	37.61%	27.07%	0.9759
UHGV-1613626	No	11,403 bps	37.60%	27.04%	0.9775
UHGV-1694597	No	10,785 bps	37.47%	25.58%	0.9773
UHGV-1683470	No	10,677 bps	37.39%	25.32%	0.9739
UHGV-1649366	No	10,206 bps	37.20%	24.93%	0.9698