vOTU-016936

Overview

vOTU representative UHGV-0209330

No. of genomes 7

Genome length 28,791 bps

Completeness 59.54% (medium-quality)

Host CAG-115 sp003531585

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-016936
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-00011 › vGENUS-00855 › vOTU-016936
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › CAG-115 › CAG-115 sp003531585
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0209330
BioSample	NA
Genome length	28,791 bps
CheckV completeness	59.54% (medium-quality)
CheckV contamination	0.00%
CDS count	39
CDS density	93.12%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209330_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0209330_1	UniRef90	UniRef90_R5GJ76	Putative phage terminase small subunit	NA
UHGV-0209330_1	eggNOG-mapper	764299.STRIC_2413	NA	NA
UHGV-0209330_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0209330_2	eggNOG-mapper	1235799.C818_01029	NA	NA
UHGV-0209330_2	AcrCatalog	cluster_9768	NA	NA
UHGV-0209330_3	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0209330_3	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0209330_3	UniRef90	UniRef90_R6SK58	Methyltransferase	NA
UHGV-0209330_3	eggNOG-mapper	1235799.C818_01028	DNA methylase	NA
UHGV-0209330_3	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0209330_3	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0209330_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0209330_3	COG	COG0863	DNA modification methylase	NA
UHGV-0209330_3	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0209330_4	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0209330_4	PHROG	phrog_38038	NA	unknown function
UHGV-0209330_4	UniRef90	UniRef90_R5GII4	Cytosine-specific methyltransferase	NA
UHGV-0209330_4	eggNOG-mapper	1235799.C818_01027	C-5 cytosine-specific DNA methylase	NA
UHGV-0209330_4	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0209330_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0209330_4	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0209330_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0209330_4	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0209330_5	UniRef90	UniRef90_R5CWD1	Arc domain-containing protein	NA
UHGV-0209330_5	eggNOG-mapper	663278.Ethha_1288	NA	NA
UHGV-0209330_5	COG	COG4877	NA	NA
UHGV-0209330_5	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0209330_6	PHROG	phrog_289	GTP-binding domain	other
UHGV-0209330_6	UniRef90	UniRef90_A0A7X6CWD5	NA	NA
UHGV-0209330_6	eggNOG-mapper	877414.ATWA01000045_gene1862	DNA mediated transformation	NA
UHGV-0209330_6	Pfam	PF10686	YspA, cpYpsA-related SLOG family	YAcAr
UHGV-0209330_6	COG	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	NA
UHGV-0209330_6	Structural annotation	PF18306, MF_01575, TIGR00732, COG0758	NA	NA
UHGV-0209330_7	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0209330_7	UniRef90	UniRef90_A0A1Y4ER49	Virulence protein	NA
UHGV-0209330_7	eggNOG-mapper	1111454.HMPREF1250_1743	NA	NA
UHGV-0209330_7	AcrCatalog	cluster_14489	NA	NA
UHGV-0209330_8	PHROG	phrog_3782	NA	unknown function
UHGV-0209330_8	UniRef90	UniRef90_R5GXE9	NA	NA
UHGV-0209330_8	eggNOG-mapper	665956.HMPREF1032_02275	NA	NA
UHGV-0209330_8	Pfam	PF14192	NA	DUF4314
UHGV-0209330_8	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0209330_8	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-0209330_9	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0209330_9	UniRef90	UniRef90_R6RDL0	Putative amidoligase enzyme	NA
UHGV-0209330_9	eggNOG-mapper	573061.Clocel_3982	amidoligase enzyme	NA
UHGV-0209330_9	AcrCatalog	cluster_58247	NA	NA
UHGV-0209330_9	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0209330_9	Structural annotation	PF12224	NA	NA
UHGV-0209330_10	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0209330_10	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0209330_10	UniRef90	UniRef90_R5GNG4	GGACT domain-containing protein	NA
UHGV-0209330_10	eggNOG-mapper	1384066.JAGT01000001_gene946	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0209330_10	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0209330_10	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0209330_10	Structural annotation	PF06094, COG2105	NA	NA
UHGV-0209330_11	PHROG	phrog_2945	NA	unknown function
UHGV-0209330_11	UniRef90	UniRef90_R6RDL5	(NiFe) hydrogenase maturation protein HypF	NA
UHGV-0209330_11	eggNOG-mapper	573061.Clocel_3980	NA	NA
UHGV-0209330_12	PHROG	phrog_4709	NA	unknown function
UHGV-0209330_12	eggNOG-mapper	1341157.RF007C_02660	NA	NA
UHGV-0209330_12	AcrCatalog	cluster_3300	NA	NA
UHGV-0209330_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0209330_13	UniRef90	UniRef90_A0A416R4G0	Terminase large subunit	NA
UHGV-0209330_13	eggNOG-mapper	1235800.C819_03966	Phage Terminase	NA
UHGV-0209330_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0209330_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0209330_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0209330_13	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0209330_14	UniRef90	UniRef90_A0A354WRR3	Type II toxin-antitoxin system Phd/YefM family antitoxin	NA
UHGV-0209330_14	eggNOG-mapper	1298920.KI911353_gene5321	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0209330_14	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0209330_14	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0209330_14	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0209330_14	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-0209330_15	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-0209330_15	PHROG	phrog_2455	NA	unknown function
UHGV-0209330_15	UniRef90	UniRef90_A0A1G4WWM4	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0209330_15	eggNOG-mapper	138119.DSY3673	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0209330_15	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0209330_15	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-0209330_15	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-0209330_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0209330_16	UniRef90	UniRef90_UPI0005598979	phage portal protein	NA
UHGV-0209330_16	eggNOG-mapper	665950.HMPREF1025_02651	Phage portal protein	NA
UHGV-0209330_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0209330_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0209330_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0209330_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0209330_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0209330_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0209330_17	UniRef90	UniRef90_R5GJ44	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0209330_17	eggNOG-mapper	1216932.CM240_0619	Belongs to the peptidase S14 family	NA
UHGV-0209330_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0209330_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0209330_17	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0209330_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0209330_18	UniRef90	UniRef90_R5GWX2	Phage major capsid protein HK97 family	NA
UHGV-0209330_18	eggNOG-mapper	1216932.CM240_0620	Phage major capsid protein, HK97 family	NA
UHGV-0209330_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0209330_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0209330_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0209330_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0209330_19	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0209330_19	UniRef90	UniRef90_A0A3D2CK45	Phage gp6-like head-tail connector protein	NA
UHGV-0209330_19	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-0209330_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0209330_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0209330_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0209330_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-0209330_20	UniRef90	UniRef90_R6RNX0	Putative phage head-tail adaptor	NA
UHGV-0209330_20	eggNOG-mapper	573061.Clocel_3973	head-tail	NA
UHGV-0209330_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0209330_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0209330_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0209330_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0209330_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0209330_21	UniRef90	UniRef90_R6RVJ8	HK97 gp10 family phage protein	NA
UHGV-0209330_21	eggNOG-mapper	693746.OBV_41500	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-0209330_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0209330_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0209330_21	Structural annotation	TIGR01725	NA	NA
UHGV-0209330_22	PHROG	phrog_78	tail terminator	connector
UHGV-0209330_22	eggNOG-mapper	498761.HM1_2876	NA	NA
UHGV-0209330_22	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0209330_23	PHROG	phrog_88	major tail protein	tail
UHGV-0209330_23	UniRef90	UniRef90_R5GWW6	Phi13 family phage major tail protein	NA
UHGV-0209330_23	eggNOG-mapper	1120978.KB894083_gene900	phage major tail protein, phi13 family	NA
UHGV-0209330_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0209330_23	COG	COG5492	NA	NA
UHGV-0209330_23	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0209330_24	PHROG	phrog_2115	tail protein	tail
UHGV-0209330_24	UniRef90	UniRef90_A0A223I0Y8	DNA-cytosine methyltransferase	NA
UHGV-0209330_24	eggNOG-mapper	1216932.CM240_1383	NA	NA
UHGV-0209330_24	Structural annotation	PF11836	NA	NA
UHGV-0209330_25	PHROG	phrog_10988	NA	unknown function
UHGV-0209330_25	eggNOG-mapper	720554.Clocl_3670	NA	NA
UHGV-0209330_28	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0209330_28	UniRef90	UniRef90_UPI001F2AF393	phage tail protein	NA
UHGV-0209330_28	eggNOG-mapper	1121334.KB911068_gene2299	Phage tail tape measure protein, TP901 family	NA
UHGV-0209330_28	COG	COG5283	Phage-related tail protein	NA
UHGV-0209330_28	Structural annotation	MF_04138, COG5280	NA	NA
UHGV-0209330_29	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0209330_29	eggNOG-mapper	1121289.JHVL01000007_gene2741	NA	NA
UHGV-0209330_29	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0209330_29	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0209330_29	COG	COG4926	Phage-related protein	NA
UHGV-0209330_29	Structural annotation	PF14594, PF00386, PF18435, TIGR01665, NF033147, COG4926	NA	NA
UHGV-0209330_30	PHROG	phrog_19291	NA	unknown function
UHGV-0209330_30	eggNOG-mapper	180332.JTGN01000004_gene2269	NA	NA
UHGV-0209330_31	PHROG	phrog_21233	NA	unknown function
UHGV-0209330_31	UniRef90	UniRef90_R5GYT0	Toxin secretion/phage lysis holin	NA
UHGV-0209330_31	eggNOG-mapper	411460.RUMTOR_00489	Bacteriophage holin family	NA
UHGV-0209330_31	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0209330_31	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0209330_31	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0209330_31	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0209330_32	KOfam	K07273	acm; lysozyme	NA
UHGV-0209330_32	PHROG	phrog_291	endolysin	lysis
UHGV-0209330_32	UniRef90	UniRef90_A0A3D4L173	Cpl-7 domain-containing protein	NA
UHGV-0209330_32	eggNOG-mapper	663278.Ethha_1853	hydrolase, family 25	NA
UHGV-0209330_32	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0209330_32	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0209330_32	COG	COG1388	LysM repeat	NA
UHGV-0209330_32	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0209330_33	KOfam	K13653	K13653; AraC family transcriptional regulator	NA
UHGV-0209330_33	UniRef90	UniRef90_A0A3D4L1S2	HTH araC/xylS-type domain-containing protein	NA
UHGV-0209330_33	eggNOG-mapper	1341157.RF007C_03535	Helix-turn-helix domain	NA
UHGV-0209330_33	COG	COG2207	AraC-type DNA-binding domain and AraC-containing proteins	NA
UHGV-0209330_35	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0209330_35	UniRef90	UniRef90_A0A292S751	DNA-binding protein	NA
UHGV-0209330_35	eggNOG-mapper	478749.BRYFOR_09807	Excisionase from transposon Tn916	NA
UHGV-0209330_35	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0209330_35	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0209330_35	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0209330_36	UniRef90	UniRef90_A0A3D4L1G9	DNA-binding protein	NA
UHGV-0209330_36	eggNOG-mapper	411474.COPEUT_02370	NA	NA
UHGV-0209330_36	Structural annotation	PF09035, TIGR01764, COG4707	NA	NA
UHGV-0209330_37	KOfam	K14059	int; integrase	NA
UHGV-0209330_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0209330_37	UniRef90	UniRef90_A0A1H3XEK6	Site-specific recombinase XerD	NA
UHGV-0209330_37	eggNOG-mapper	476272.RUMHYD_01496	NA	NA
UHGV-0209330_37	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0209330_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0209330_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0209330_37	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0209330_38	UniRef90	UniRef90_A0A173R7X5	Bacterial Ig-like domain (Group 2)	NA
UHGV-0209330_38	eggNOG-mapper	748224.HMPREF9436_01119	sirohydrochlorin cobaltochelatase activity	NA
UHGV-0209330_38	COG	COG2138	Sirohydrochlorin ferrochelatase	NA
UHGV-0209330_39	KOfam	K22605	baiA; 3alpha-hydroxycholanate dehydrogenase (NADP+) [EC:1.1.1.392]	NA
UHGV-0209330_39	PHROG	phrog_3142	FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0209330_39	UniRef90	UniRef90_A0A2V2F7C3	Short-chain dehydrogenase	NA
UHGV-0209330_39	eggNOG-mapper	411470.RUMGNA_02133	NA	NA
UHGV-0209330_39	Pfam	PF13561	Enoyl-(Acyl carrier protein) reductase	adh_short_C2
UHGV-0209330_39	COG	COG1028	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0209330	Yes	28,791 bps	48.83%	59.54%	0.9705
UHGV-1947615	No	22,291 bps	48.35%	48.43%	0.9717
UHGV-0164106	No	16,314 bps	49.87%	30.05%	0.9731
UHGV-2228000	No	14,362 bps	48.87%	27.14%	0.9791
UHGV-0333286	No	12,440 bps	49.59%	22.33%	0.9782
UHGV-0257712	No	13,391 bps	46.94%	17.10%	0.9656
UHGV-0169707	No	12,599 bps	46.82%	16.11%	0.9686