vOTU-017138

Overview

vOTU representative UHGV-0020069

No. of genomes 11

Genome length 76,526 bps

Completeness 73.46% (medium-quality)

Host Treponema D sp900541995

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-017138
Number of genomes	11
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00559 › vOTU-017138
Host taxonomy	Bacteria › Spirochaetota › Spirochaetia › Treponematales › Treponemataceae › Treponema D › Treponema D sp900541995
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0020069
BioSample	SAMEA4765845
Genome length	76,526 bps
CheckV completeness	73.46% (medium-quality)
CheckV contamination	0.00%
CDS count	110
CDS density	90.88%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020069_1	eggNOG-mapper	1219626.HMPREF1639_07265	sequence-specific DNA binding	NA
UHGV-0020069_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020069_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0020069_3	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0020069_3	UniRef90	UniRef90_A0A0R1MQE6	Methyltransferase	NA
UHGV-0020069_3	eggNOG-mapper	148814.JI66_07095	DNA methylase	NA
UHGV-0020069_3	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0020069_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0020069_3	COG	COG0863	DNA modification methylase	NA
UHGV-0020069_3	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0020069_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0020069_4	UniRef90	UniRef90_UPI00165238BB	helix-turn-helix domain-containing protein	NA
UHGV-0020069_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020069_6	UniRef90	UniRef90_A0A6P1XZN7	Helix-turn-helix transcriptional regulator	NA
UHGV-0020069_6	eggNOG-mapper	573413.Spirs_2166	helix-turn-helix domain protein	NA
UHGV-0020069_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0020069_9	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0020069_9	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0020069_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0020069_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0020069_10	UniRef90	UniRef90_A0A1V5WC33	DNA helicase	NA
UHGV-0020069_10	eggNOG-mapper	1480694.DC28_00840	Participates in initiation and elongation during chromosome replication	NA
UHGV-0020069_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0020069_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0020069_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0020069_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0020069_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0020069_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0020069_14	UniRef90	UniRef90_S3JZY3	Single-stranded DNA-binding protein	NA
UHGV-0020069_14	eggNOG-mapper	1125699.HMPREF9194_01139	Single-stranded DNA-binding protein	NA
UHGV-0020069_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0020069_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0020069_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0020069_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0020069_14	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0020069_15	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0020069_15	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0020069_15	UniRef90	UniRef90_A0A843H600	dUTP diphosphatase	NA
UHGV-0020069_15	eggNOG-mapper	1284708.HMPREF1634_05545	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0020069_15	Pfam	PF00692	dUTPase	dUTPase
UHGV-0020069_15	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0020069_15	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0020069_15	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0020069_20	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0020069_20	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020069_20	UniRef90	UniRef90_A0A843HAQ1	Metallophosphoesterase family protein	NA
UHGV-0020069_20	eggNOG-mapper	251221.35213432	SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity	NA
UHGV-0020069_20	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0020069_22	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0020069_22	UniRef90	UniRef90_UPI00037C5E3A	NA	NA
UHGV-0020069_22	eggNOG-mapper	449673.BACSTE_03041	NA	NA
UHGV-0020069_22	Pfam	PF14359	NA	DUF4406
UHGV-0020069_22	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0020069_22	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0020069_23	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0020069_23	UniRef90	UniRef90_UPI001A9BF0E5	NA	NA
UHGV-0020069_23	eggNOG-mapper	1111134.HMPREF1253_1197	NA	NA
UHGV-0020069_23	Pfam	PF06356	NA	DUF1064
UHGV-0020069_23	Structural annotation	PF06356	NA	NA
UHGV-0020069_38	PHROG	phrog_4973	NA	unknown function
UHGV-0020069_38	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0020069_39	KOfam	K03547	sbcD, mre11; DNA repair protein SbcD/Mre11	NA
UHGV-0020069_39	PHROG	phrog_100	SbcD-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020069_39	UniRef90	UniRef90_A0A1F9CXA5	Metallophos domain-containing protein	NA
UHGV-0020069_39	eggNOG-mapper	1217714.F975_02432	SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity	NA
UHGV-0020069_39	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0020069_39	COG	COG0420	DNA repair exonuclease SbcCD nuclease subunit	NA
UHGV-0020069_40	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0020069_40	UniRef90	UniRef90_UPI00083C9B96	ERF family protein	NA
UHGV-0020069_40	eggNOG-mapper	764291.STRUR_0809	ERF superfamily	NA
UHGV-0020069_40	Pfam	PF04404	ERF superfamily	ERF
UHGV-0020069_46	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0020069_46	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0020069_46	UniRef90	UniRef90_UPI0015D870CA	DNA cytosine methyltransferase	NA
UHGV-0020069_46	eggNOG-mapper	1217652.F954_01152	C-5 cytosine-specific DNA methylase	NA
UHGV-0020069_46	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0020069_46	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0020069_46	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0020069_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0020069_46	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0020069_49	eggNOG-mapper	1410625.JHWK01000005_gene1354	NA	NA
UHGV-0020069_51	PHROG	phrog_6721	NA	unknown function
UHGV-0020069_51	eggNOG-mapper	1235802.C823_04642	NA	NA
UHGV-0020069_51	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0020069_55	KOfam	K07391	comM; magnesium chelatase family protein	NA
UHGV-0020069_55	UniRef90	UniRef90_A0A3N0ZM53	ATP-binding protein	NA
UHGV-0020069_55	eggNOG-mapper	1124982.MSI_9840	magnesium chelatase	NA
UHGV-0020069_55	Pfam	PF01078	Magnesium chelatase, subunit ChlI	Mg_chelatase
UHGV-0020069_55	Pfam	PF13335	Magnesium chelatase, subunit ChlI C-terminal	Mg_chelatase_C
UHGV-0020069_55	COG	COG0606	Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family	NA
UHGV-0020069_60	UniRef90	UniRef90_A0A7J4XME3	Ubiquitin carboxyl-hydrolase	NA
UHGV-0020069_60	eggNOG-mapper	742727.HMPREF9447_00657	NA	NA
UHGV-0020069_60	PADLOC	drt-cluster337	DRT	DRT
UHGV-0020069_60	NCBIFam	TIGR02098.1	MJ0042-type zinc finger domain-containing protein	NA
UHGV-0020069_61	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0020069_61	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0020069_61	UniRef90	UniRef90_A0A2L2WVN7	Retron-type RNA-directed DNA polymerase	NA
UHGV-0020069_61	eggNOG-mapper	445970.ALIPUT_02574	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0020069_61	PADLOC	drt-UG27	DRT	DRT
UHGV-0020069_61	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0020069_61	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0020069_62	PHROG	phrog_1987	NA	unknown function
UHGV-0020069_62	eggNOG-mapper	1283340.Q6WHS5_BPKVM	NA	NA
UHGV-0020069_67	UniRef90	UniRef90_A0A355U048	NA	NA
UHGV-0020069_67	Structural annotation	PF14192, NF007106	NA	NA
UHGV-0020069_70	eggNOG-mapper	1384065.JAGS01000005_gene3323	NA	NA
UHGV-0020069_72	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0020069_72	UniRef90	UniRef90_A0A1N7IH19	Antirestriction protein	NA
UHGV-0020069_72	eggNOG-mapper	421531.IX38_07255	Antirestriction protein (ArdA)	NA
UHGV-0020069_72	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0020069_72	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0020069_72	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0020069_72	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0020069_78	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0020069_80	PHROG	phrog_774	NA	unknown function
UHGV-0020069_80	eggNOG-mapper	469604.HMPREF0946_01068	NA	NA
UHGV-0020069_80	Structural annotation	PF10458	NA	NA
UHGV-0020069_83	Pfam	PF03196	NA	DUF261
UHGV-0020069_83	Structural annotation	PF03196	NA	NA
UHGV-0020069_87	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0020069_87	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0020069_87	UniRef90	UniRef90_A0A843H313	Terminase family protein	NA
UHGV-0020069_87	eggNOG-mapper	1547445.LO80_03300	Terminase-like family	NA
UHGV-0020069_87	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0020069_87	COG	COG1783	Phage terminase large subunit	NA
UHGV-0020069_87	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG5323	NA	NA
UHGV-0020069_88	PHROG	phrog_145	portal protein	head and packaging
UHGV-0020069_88	UniRef90	UniRef90_A0A843H903	NA	NA
UHGV-0020069_88	eggNOG-mapper	1335760.ASTG01000033_gene41	NA	NA
UHGV-0020069_88	Pfam	PF13264	NA	DUF4055
UHGV-0020069_88	Structural annotation	PF05133, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0020069_89	PHROG	phrog_241	head morphogenesis	head and packaging
UHGV-0020069_89	eggNOG-mapper	452662.SJA_C1-08500	Phage Mu protein F like protein	NA
UHGV-0020069_89	COG	COG2369	NA	NA
UHGV-0020069_90	PHROG	phrog_206	head scaffolding protein	head and packaging
UHGV-0020069_91	PHROG	phrog_283	major head protein	head and packaging
UHGV-0020069_91	UniRef90	UniRef90_UPI000DAE23E0	P22 coat - protein 5 family protein	NA
UHGV-0020069_91	eggNOG-mapper	1000565.METUNv1_01689	P22 coat protein - gene protein 5	NA
UHGV-0020069_91	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0020069_91	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0020069_93	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0020069_93	UniRef90	UniRef90_A0A482MIF3	Structural protein	NA
UHGV-0020069_93	eggNOG-mapper	1468411.X2KSU3_9CAUD	NA	NA
UHGV-0020069_93	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0020069_93	Structural annotation	PF20557	NA	NA
UHGV-0020069_94	PHROG	phrog_161	head closure Hc1	connector
UHGV-0020069_96	Structural annotation	PF13554	NA	NA
UHGV-0020069_97	PHROG	phrog_290	minor tail protein	tail
UHGV-0020069_97	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0020069_100	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0020069_100	UniRef90	UniRef90_A0A843H854	Tape measure protein	NA
UHGV-0020069_100	eggNOG-mapper	1122971.BAME01000006_gene892	NA	NA
UHGV-0020069_100	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0020069_100	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0020069_100	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0020069_103	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0020069_103	PHROG	phrog_329	minor tail protein	tail
UHGV-0020069_103	UniRef90	UniRef90_A0A843H9Z1	C40 family peptidase	NA
UHGV-0020069_103	eggNOG-mapper	910314.HMPREF9220_0609	NlpC/P60 family	NA
UHGV-0020069_103	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0020069_103	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0020069_103	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0020069_104	PHROG	phrog_26466	NA	unknown function
UHGV-0020069_104	UniRef90	UniRef90_A0A843H6T2	Glycine zipper family protein	NA
UHGV-0020069_104	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0020069_109	KOfam	K14059	int; integrase	NA
UHGV-0020069_109	PHROG	phrog_1	integrase	integration and excision
UHGV-0020069_109	UniRef90	UniRef90_A0A5C1QFC7	Site-specific integrase	NA
UHGV-0020069_109	eggNOG-mapper	545694.TREPR_2080	Belongs to the 'phage' integrase family	NA
UHGV-0020069_109	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0020069_109	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0020069_109	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0020069_109	Structural annotation	PF00589, PF13102, MF_01808, NF007246, COG4974	NA	NA
UHGV-0020069_110	eggNOG-mapper	1410609.JHVB01000001_gene1699	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	NA
UHGV-0020069_110	COG	COG0841	Multidrug efflux pump subunit AcrB	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0020069	Yes	76,526 bps	36.55%	73.46%	0.9276
UHGV-0025281	No	76,237 bps	36.52%	100.00%	0.9326
UHGV-0035189	No	77,765 bps	36.36%	74.65%	0.9266
UHGV-0000638	No	76,753 bps	36.22%	73.68%	0.9254
UHGV-0002301	No	76,653 bps	36.21%	73.58%	0.9238
UHGV-0023681	No	75,972 bps	36.22%	72.93%	0.9221
UHGV-0027196	No	75,972 bps	36.22%	72.93%	0.9221
UHGV-0025952	No	74,129 bps	36.64%	71.16%	0.9332
UHGV-0583335	No	50,939 bps	36.91%	48.90%	0.9306
UHGV-0344413	No	50,204 bps	36.97%	48.19%	0.9406
UHGV-0627774	No	22,594 bps	34.77%	15.82%	0.9169