vOTU-017367

Overview

vOTU representative UHGV-0192138

No. of genomes 6

Genome length 47,835 bps

Completeness 81.22% (medium-quality)

Host Agathobacter rectalis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-017367
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 › vSUBFAM-00048 › vGENUS-00024 › vOTU-017367
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Agathobacter › Agathobacter rectalis
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0192138
BioSample	SAMN05414974
Genome length	47,835 bps
CheckV completeness	81.22% (medium-quality)
CheckV contamination	0.00%
CDS count	77
CDS density	87.89%
tRNA count	3
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0192138_1	KOfam	K14059	int; integrase	NA
UHGV-0192138_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0192138_1	UniRef90	UniRef90_R6CA87	Site-specific recombinase phage integrase family	NA
UHGV-0192138_1	eggNOG-mapper	411489.CLOL250_01458	Belongs to the 'phage' integrase family	NA
UHGV-0192138_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0192138_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0192138_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0192138_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0192138_2	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0192138_2	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0192138_2	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-0192138_2	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0192138_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0192138_2	Structural annotation	PF09035, TIGR01764, COG2771, COG3311	NA	NA
UHGV-0192138_3	PHROG	phrog_8684	NA	unknown function
UHGV-0192138_3	UniRef90	UniRef90_A0A173RDP8	YopX protein	NA
UHGV-0192138_3	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0192138_3	Pfam	PF09643	YopX protein	YopX
UHGV-0192138_3	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0192138_3	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0192138_5	PHROG	phrog_38832	NA	unknown function
UHGV-0192138_5	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0192138_5	eggNOG-mapper	397291.C804_00903	NA	NA
UHGV-0192138_6	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0192138_6	UniRef90	UniRef90_A0A413YTK1	NA	NA
UHGV-0192138_6	eggNOG-mapper	1211817.CCAT010000053_gene2117	NA	NA
UHGV-0192138_6	Pfam	PF12961	NA	DUF3850
UHGV-0192138_6	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0192138_7	PHROG	phrog_20593	NA	unknown function
UHGV-0192138_8	PHROG	phrog_22292	NA	unknown function
UHGV-0192138_13	PHROG	phrog_9804	NA	unknown function
UHGV-0192138_13	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0192138_13	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0192138_13	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0192138_13	Structural annotation	PF11417	NA	NA
UHGV-0192138_14	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0192138_14	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0192138_14	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-0192138_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0192138_15	Structural annotation	PF17388	NA	NA
UHGV-0192138_19	PHROG	phrog_19106	NA	unknown function
UHGV-0192138_19	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0192138_19	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0192138_19	Structural annotation	TIGR01453	NA	NA
UHGV-0192138_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0192138_20	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0192138_20	UniRef90	UniRef90_A0A1G5ET13	Methyltransferase	NA
UHGV-0192138_20	eggNOG-mapper	1122243.KB903771_gene1539	DNA methylase	NA
UHGV-0192138_20	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0192138_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0192138_20	COG	COG0863	DNA modification methylase	NA
UHGV-0192138_20	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0192138_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0192138_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0192138_21	UniRef90	UniRef90_A0A1I6JG45	Single-stranded DNA-binding protein	NA
UHGV-0192138_21	eggNOG-mapper	1235793.C809_02091	Single-strand binding protein family	NA
UHGV-0192138_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0192138_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0192138_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0192138_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0192138_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0192138_23	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0192138_23	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0192138_23	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0192138_23	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0192138_23	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0192138_24	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0192138_24	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0192138_24	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0192138_24	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0192138_24	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0192138_26	PHROG	phrog_25456	NA	unknown function
UHGV-0192138_27	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0192138_27	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0192138_27	UniRef90	UniRef90_A0A1C5WMV6	p33	NA
UHGV-0192138_27	eggNOG-mapper	431943.CKL_0416	RecT family	NA
UHGV-0192138_27	Pfam	PF03837	RecT family	RecT
UHGV-0192138_27	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0192138_27	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0192138_27	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0192138_30	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0192138_30	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0192138_30	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0192138_30	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0192138_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0192138_30	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0192138_33	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0192138_33	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0192138_34	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0192138_34	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0192138_34	eggNOG-mapper	1449343.JQLQ01000002_gene1556	BRO family, N-terminal domain	NA
UHGV-0192138_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0192138_34	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0192138_34	COG	COG3617	Prophage antirepressor	NA
UHGV-0192138_34	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0192138_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0192138_37	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0192138_37	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0192138_37	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0192138_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0192138_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0192138_38	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0192138_39	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0192138_40	PHROG	phrog_3845	NA	unknown function
UHGV-0192138_42	PHROG	phrog_24159	tail fiber protein	tail
UHGV-0192138_42	eggNOG-mapper	552398.HMPREF0866_01593	tail collar domain protein	NA
UHGV-0192138_42	COG	COG4675	Phage tail collar domain	NA
UHGV-0192138_43	PHROG	phrog_6616	tail protein	tail
UHGV-0192138_43	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0192138_43	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0192138_43	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0192138_43	Structural annotation	PF05113, PF20010, NF033848, COG3500	NA	NA
UHGV-0192138_44	PHROG	phrog_1194	NA	unknown function
UHGV-0192138_44	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-0192138_44	Pfam	PF20458	NA	DUF6711
UHGV-0192138_44	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0192138_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0192138_45	UniRef90	UniRef90_A0A1I0JNI7	Phage-related protein	NA
UHGV-0192138_45	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0192138_45	COG	COG1511	NA	NA
UHGV-0192138_46	KOfam	K07273	acm; lysozyme	NA
UHGV-0192138_46	PHROG	phrog_291	endolysin	lysis
UHGV-0192138_46	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0192138_46	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0192138_46	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0192138_46	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0192138_46	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0192138_49	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0192138_49	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0192138_50	Structural annotation	PF05657	NA	NA
UHGV-0192138_51	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0192138_51	AcrCatalog	cluster_24841	NA	NA
UHGV-0192138_52	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0192138_52	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0192138_53	PHROG	phrog_1129	holin	lysis
UHGV-0192138_53	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0192138_53	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0192138_53	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0192138_53	Structural annotation	PF06946	NA	NA
UHGV-0192138_54	PHROG	phrog_4105	NA	unknown function
UHGV-0192138_54	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0192138_55	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0192138_56	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0192138_56	Structural annotation	PF21169	NA	NA
UHGV-0192138_57	PHROG	phrog_29	major head protein	head and packaging
UHGV-0192138_57	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0192138_57	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0192138_57	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0192138_57	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0192138_58	PHROG	phrog_909	major head protein	head and packaging
UHGV-0192138_58	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0192138_59	UniRef90	UniRef90_UPI00189AAC90	NA	NA
UHGV-0192138_59	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0192138_60	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0192138_60	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0192138_60	eggNOG-mapper	1207076.ALAT01000105_gene1902	head morphogenesis protein, SPP1	NA
UHGV-0192138_60	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0192138_60	COG	COG2369	NA	NA
UHGV-0192138_60	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0192138_61	PHROG	phrog_64	portal protein	head and packaging
UHGV-0192138_61	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0192138_61	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0192138_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0192138_61	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0192138_62	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0192138_62	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0192138_62	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-0192138_62	Pfam	PF07374	NA	DUF1492
UHGV-0192138_62	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0192138_62	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0192138_63	PHROG	phrog_9529	NA	unknown function
UHGV-0192138_63	UniRef90	UniRef90_UPI000836A084	NA	NA
UHGV-0192138_63	eggNOG-mapper	202752.JL53_03720	NA	NA
UHGV-0192138_63	Pfam	PF04480	NA	DUF559
UHGV-0192138_63	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-0192138_63	Structural annotation	PF04480, NF007294, COG2852	NA	NA
UHGV-0192138_64	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0192138_64	UniRef90	UniRef90_A0A352SH30	Terminase_6C domain-containing protein	NA
UHGV-0192138_64	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0192138_64	COG	COG5410	NA	NA
UHGV-0192138_64	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0192138_65	UniRef90	UniRef90_UPI0019572D92	NA	NA
UHGV-0192138_65	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0192138_65	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0192138_66	PHROG	phrog_1233	NA	unknown function
UHGV-0192138_66	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0192138_66	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0192138_66	Structural annotation	PF13058	NA	NA
UHGV-0192138_69	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0192138_70	Structural annotation	PF04466	NA	NA
UHGV-0192138_72	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0192138_72	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0192138_73	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0192138_73	UniRef90	UniRef90_UPI00148DB0F2	DnaD domain protein	NA
UHGV-0192138_73	eggNOG-mapper	1029718.SFBM_0770	DnaD domain protein	NA
UHGV-0192138_73	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0192138_73	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-0192138_76	PHROG	phrog_236	nucleotide kinase	other
UHGV-0192138_76	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0192138_76	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-0192138_76	Pfam	PF11753	NA	DUF3310
UHGV-0192138_76	Structural annotation	PF11753	NA	NA
UHGV-0192138_77	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0192138_77	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0192138_77	Structural annotation	PF16677	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0192138	Yes	47,835 bps	38.71%	81.22%	0.9787
UHGV-0148366	No	39,830 bps	41.14%	67.63%	0.9786
UHGV-1681780	No	27,336 bps	39.64%	46.45%	0.9804
UHGV-1679956	No	26,822 bps	39.43%	45.56%	0.9793
UHGV-1840466	No	20,346 bps	37.64%	34.50%	0.9809
UHGV-1838504	No	19,913 bps	37.77%	33.77%	0.9789